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(-) Description

Title :  HETEROTETRAMERIC SARCOSINE OXIDASE FROM CORYNEBACTERIUM SP. U-96 IN COMPLEX WITH METHYLTHIO ACETATE
 
Authors :  H. Suzuki, T. Moriguchi, K. Ida
Date :  15 Jan 10  (Deposition) - 25 Aug 10  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Sarcosine Oxidase, Ligand Complex, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Moriguchi, K. Ida, T. Hikima, G. Ueno, M. Yamamoto, H. Suzuki
Channeling And Conformational Changes In The Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96.
J. Biochem. V. 148 491 2010
PubMed-ID: 20675294  |  Reference-DOI: 10.1093/JB/MVQ083

(-) Compounds

Molecule 1 - SUBUNIT ALPHA OF SARCOSINE OXIDASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET31B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SOXA
    Organism Scientific: CORYNEBACTERIUM SP. U-96
    Organism Taxid: 31944
 
Molecule 2 - SUBUNIT BETA OF SARCOSINE OXIDASE
    Chains: B
    EC Number: 1.5.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET31B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SOXB
    Organism Scientific: CORYNEBACTERIUM SP. U-96
    Organism Taxid: 31944
 
Molecule 3 - SUBUNIT GAMMA OF SARCOSINE OXIDASE
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET31B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 11-205
    Gene: SOXG
    Organism Scientific: CORYNEBACTERIUM SP. U-96
    Organism Taxid: 31944
 
Molecule 4 - SUBUNIT DELTA OF SARCOSINE OXIDASE
    Chains: D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET31B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SOXD
    Organism Scientific: CORYNEBACTERIUM SP. U-96
    Organism Taxid: 31944

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 14)

Asymmetric/Biological Unit (6, 14)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
3MTG1Ligand/Ion[METHYLTHIO]ACETATE
4NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
5SO49Ligand/IonSULFATE ION
6ZN1Ligand/IonZINC ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:134 , GLY A:136 , PRO A:137 , ALA A:138 , ASP A:157 , GLU A:158 , ARG A:159 , GLY A:164 , THR A:165 , THR A:202 , THR A:203 , VAL A:204 , ALA A:247 , THR A:248 , ALA A:249 , SER A:294 , PHE A:380 , LEU A:386 , GLY A:416 , ALA A:417 , LEU A:422 , ASP A:423 , THR A:424 , TYR A:553 , HOH A:971 , HOH A:979 , HOH A:982 , HOH A:997 , HOH A:1059 , HOH A:1209 , HOH A:1255BINDING SITE FOR RESIDUE NAD A 965
02AC2SOFTWAREARG A:597 , LEU A:631 , THR A:692 , THR A:693 , HOH A:1467BINDING SITE FOR RESIDUE SO4 A 2559
03AC3SOFTWAREASN A:651 , GLY A:652 , SER A:847 , LEU A:849 , HOH A:1473BINDING SITE FOR RESIDUE SO4 A 2560
04AC4SOFTWARESER A:7 , ALA A:8 , ARG A:18 , HOH A:1465BINDING SITE FOR RESIDUE SO4 A 2563
05AC5SOFTWAREGLN A:217 , ARG A:219 , HOH A:1144 , HOH A:1304BINDING SITE FOR RESIDUE SO4 A 2567
06AC6SOFTWAREHIS A:870 , ARG A:929 , ASN A:930BINDING SITE FOR RESIDUE SO4 A 2571
07AC7SOFTWAREGLY B:27 , GLY B:29 , GLY B:30 , HIS B:31 , LEU B:51 , GLU B:52 , LYS B:53 , GLY B:59 , ASN B:60 , MET B:61 , ARG B:63 , ASN B:64 , THR B:65 , THR B:66 , ILE B:67 , CYS B:194 , GLU B:195 , VAL B:196 , ALA B:224 , GLY B:225 , ALA B:226 , HIS B:228 , LEU B:232 , LEU B:247 , ALA B:249 , GLY B:326 , GLY B:353 , THR B:354 , GLY B:355 , GLY B:356 , PHE B:357 , LYS B:358 , HOH B:408 , HOH B:417 , HOH B:432 , HOH B:525 , HOH B:657 , HOH B:681 , HOH B:765 , MTG B:801BINDING SITE FOR RESIDUE FAD B 405
08AC8SOFTWARELYS A:509 , ARG A:510 , THR A:516 , GLN A:520 , THR A:548 , ARG A:550 , HOH A:978 , ALA B:62 , ARG B:63 , ASN B:64 , THR B:66 , HIS B:172 , VAL B:251 , LYS B:277 , GLU B:279 , ARG B:322 , TRP B:324 , HOH B:433 , HOH B:449 , HOH B:457 , HOH B:463 , HOH B:541BINDING SITE FOR RESIDUE FMN B 406
09AC9SOFTWAREILE B:67 , ARG B:69 , MET B:264 , TYR B:271 , THR B:354 , LYS B:358 , VAL B:402 , FAD B:405 , HOH B:468BINDING SITE FOR RESIDUE MTG B 801
10BC1SOFTWAREHIS B:7 , LYS B:171 , HIS B:174 , HOH B:452 , HOH B:462 , HOH B:788BINDING SITE FOR RESIDUE SO4 B 2568
11BC2SOFTWAREASN B:13 , ASN B:14 , HOH B:469BINDING SITE FOR RESIDUE SO4 B 2569
12BC3SOFTWAREGLN A:30 , ALA C:25 , GLY C:26 , GLU C:27 , ARG C:28BINDING SITE FOR RESIDUE SO4 C 2564
13BC4SOFTWARECYS D:6 , CYS D:9 , HIS D:59 , CYS D:63BINDING SITE FOR RESIDUE ZN D 100
14BC5SOFTWAREARG D:83BINDING SITE FOR RESIDUE SO4 D 2566

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3AD7)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:551 -Pro A:552

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3AD7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3AD7)

(-) Exons   (0, 0)

(no "Exon" information available for 3AD7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:963
 aligned with Q50LF0_9CORY | Q50LF0 from UniProtKB/TrEMBL  Length:965

    Alignment length:963
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961   
         Q50LF0_9CORY     2 SKPQRLSAAQTAGARINRDEALTLTVDGQQLSAFRGDTVASAMLANGLRSCGNSMYLDRPRGIFSAGVEEPNALITVGARHQADINESMLPATTVSVTDGLNATLLSGLGVLDPSEDPAYYDHVHVHTDVLVVGAGPAGLAAAREASRSGARVMLLDERPEAGGTLREASGEQIDGIDAAQWIDAVTEELAAAEETTHLQRTTVFGSYDANYILAAQRRTVHLDGPSGQGVSRERIWHIRAKQVVLATAAHERPIVFENNDRPGIMLAGSVRSYLNRFGVRAGSKIAVATTNDSVYPLVSELAASGGVVAVIDARQNISAAAAQAVTDGVTVLTGSVVANTEADASGELSAVLVATLDEQRNLGEAQRFEADVLAVSGGFNPVVHLHSQRQGKLNWDTSIHAFVPADAVANQHLAGALTGLLDTASALSTGAATGAAAASAAGFEKIAEVPQALAVPAGETRPVWLVPSLSGDDAVHYKFHFVDLQRDQTVADVLRATGAGMQSVEHIKRYTSISTANDQGKTSGVAAIGVIAAVLGIENPAQIGTTTFRAPYTPVSFAALAGRTRGELLDPARLTAMHPWHLAHGAKFEDVGQWKRPWYYPQDGESMDEAVYRECKAVRDSVGMLDASTLGKIEIRGKDAAEFLNRMYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLRLAEDRFLMHTTTGGAADVLDWLEEWLQTEWPELDVTCTSVTEQLATVAVVGPRSRDVIAKLASSLDVSNDAFKFMAFQDVTLDSGIEARISRISFSGELAFEIAIPAWHGLQVWEDVYAAGQEFNITPYGTETMHVLRAEKGFIIVGQDTDGTVTPQDAGMEWVVSKLKDFVGKRSFSREDNVREDRKHLVSVLPVDSSLRLAEGAALVAADAVASEGVTPMEGWVTHAYNSPALGRTFGLALIKNGRNRIGEVLKTPVDGQLVDVQVSDLVLFDPEGSRRD 964
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee..hhhhh....eeeeeeeeee..eeeeeee..hhhhhhhhh...........................eeee.........eeeee.........eeeee...............eeeeeeeeeeeee..hhhhhhhhhhhhhh...eeee......hhhhhhh...ee..eehhhhhhhhhhhhhhh..eeee..eeeeeee...eeeeeee...............eeeeeeeeeeeee...eee............eeehhhhhhhhhhhhee....eeeee.hhhhhhhhhhhhhhh....eee.....hhhhhhhhhh...ee..eeeeeeee.....eeeeeeee..........eeee..eeeee..eee.hhhhhhh...eeee....eeee......eee.hhhhh..hhhhhhhhhhhhhhhhhhhh...............................hhhhh...eee....eehhhhhhhhhh...hhhhhhhhhh..........hhhhhhhhhhhhhh..hhhhhh..........eehhhhhh..hhhhhh......hhhhhhhh..eeeee..eeeeee......hhhhhhhhhhhhhhhh.eeee....eeeeee..hhhhhhhhhh...........eeeeeee.....eeeeeeeeeee..eeeeee...hhhhhhhhhhhhhhhh......eeee....eeeeeee..hhhhhhhhhh..............eeeee.....eeeee........eeeeeee..hhhhhhhhhhhhhhhhh.ee.hhhhhhhhhhhh...................hhhhh.......hhhhhhhhhhhh...eeeeeeee...........eeee.............eeeeeeeee....eeeeeeeee.hhhh...eeeeee..eeeeeeee............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ad7 A   1 SKPQRLSAAQTAGARINRDEALTLTVDGQQLSAFRGDTVASAMLANGLRSCGNSMYLDRPRGIFSAGVEEPNALITVGARHQADINESMLPATTVSVTDGLNATLLSGLGVLDPSEDPAYYDHVHVHTDVLVVGAGPAGLAAAREASRSGARVMLLDERPEAGGTLREASGEQIDGIDAAQWIDAVTEELAAAEETTHLQRTTVFGSYDANYILAAQRRTVHLDGPSGQGVSRERIWHIRAKQVVLATAAHERPIVFENNDRPGIMLAGSVRSYLNRFGVRAGSKIAVATTNDSVYPLVSELAASGGVVAVIDARQNISAAAAQAVTDGVTVLTGSVVANTEADASGELSAVLVATLDEQRNLGEAQRFEADVLAVSGGFNPVVHLHSQRQGKLNWDTSIHAFVPADAVANQHLAGALTGLLDTASALSTGAATGAAAASAAGFEKIAEVPQALAVPAGETRPVWLVPSLSGDDAVHYKFHFVDLQRDQTVADVLRATGAGMQSVEHIKRYTSISTANDQGKTSGVAAIGVIAAVLGIENPAQIGTTTFRAPYTPVSFAALAGRTRGELLDPARLTAMHPWHLAHGAKFEDVGQWKRPWYYPQDGESMDEAVYRECKAVRDSVGMLDASTLGKIEIRGKDAAEFLNRMYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLRLAEDRFLMHTTTGGAADVLDWLEEWLQTEWPELDVTCTSVTEQLATVAVVGPRSRDVIAKLASSLDVSNDAFKFMAFQDVTLDSGIEARISRISFSGELAFEIAIPAWHGLQVWEDVYAAGQEFNITPYGTETMHVLRAEKGFIIVGQDTDGTVTPQDAGMEWVVSKLKDFVGKRSFSREDNVREDRKHLVSVLPVDSSLRLAEGAALVAADAVASEGVTPMEGWVTHAYNSPALGRTFGLALIKNGRNRIGEVLKTPVDGQLVDVQVSDLVLFDPEGSRRD 963
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960   


Chain B from PDB  Type:PROTEIN  Length:404
 aligned with Q50LF2_9CORY | Q50LF2 from UniProtKB/TrEMBL  Length:405

    Alignment length:404
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401    
         Q50LF2_9CORY     2 ADLLPEHPEFLWNNPEPKKSYDVVIVGGGGHGLATAYYLAKNHGITNVAVLEKGWLAGGNMARNTTIIRSNYLWDESAGIYEKSLKLWEELPEELEYDFLFSQRGVLNLAHTLGDVRESIRRVEANKFNGVDAEWLTPEQVKEVCPIINTGDNIRYPVMGATYQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFLKDGEKVTGVKTTRGTILAGKVALAGAGHSSVLAELAGFELPIQSHPLQALVSELFEPVHPTVVMSNHIHVYVSQAHKGELVMGAGIDSYNGYGQRGAFHVIEEQMAAAVELFPIFARAHVLRTWGGIVDTTMDASPIISKTPIQNLYVNCGWGTGGFKGTPGAGYTLAHTIAHDEPHKLNAPFALERFETGHLIDEHGAAAVAH 405
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeeeeee..hhhhhhhhhhhhhhhh...eeee.......hhhhh...ee.....hhhhhhhhhhhhhhhhhhhhhhh.........eeeee.hhhhhhhhhhhhhhhhhh....eeehhhhhhhhh..............eeeee...ee.hhhhhhhhhhhhhhhh..eee....eeeeee....eeeeee....eeeeeeee.hhhhhhhhhhhhh....eeeeeeeeeeeee.......eeee....eeeee....eeeeeeee...........hhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeee.....eeee.....eeeee........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhh....hhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ad7 B   1 ADLLPEHPEFLWNNPEPKKSYDVVIVGGGGHGLATAYYLAKNHGITNVAVLEKGWLAGGNMARNTTIIRSNYLWDESAGIYEKSLKLWEELPEELEYDFLFSQRGVLNLAHTLGDVRESIRRVEANKFNGVDAEWLTPEQVKEVCPIINTGDNIRYPVMGATYQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFLKDGEKVTGVKTTRGTILAGKVALAGAGHSSVLAELAGFELPIQSHPLQALVSELFEPVHPTVVMSNHIHVYVSQAHKGELVMGAGIDSYNGYGQRGAFHVIEEQMAAAVELFPIFARAHVLRTWGGIVDTTMDASPIISKTPIQNLYVNCGWGTGGFKGTPGAGYTLAHTIAHDEPHKLNAPFALERFETGHLIDEHGAAAVAH 404
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400    


Chain C from PDB  Type:PROTEIN  Length:195
 aligned with Q50LE9_9CORY | Q50LE9 from UniProtKB/TrEMBL  Length:205

    Alignment length:195
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200     
         Q50LE9_9CORY    11 QLRRSPAAHLAAAMEAAEVAGERAVTLREVAFTTQLGLRAVPGSTGHAALAAATGVGLPAAVGEVAGDVSGTAVLWLGPDEFLLAAEENPALLDTLQGALGQEPGQVLDLSANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSLANIPVLLWRTGEQSWRILPRASFTEHTVHWLIDAMSEFSAAEVA 205
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh........eeee....eeeeee....hhhhhhhhhhh..........eee.....eeeeee..eeeeee...hhhhhhhhhhhh....eeee.......eeee..hhhhhhh...............eeeeeee..eeeeeeeee..eeeee.hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ad7 C   6 QLRRSPAAHLAAAMEAAEVAGERAVTLREVAFTTQLGLRAVPGSTGHAALAAATGVGLPAAVGEVAGDVSGTAVLWLGPDEFLLAAEENPALLDTLQGALGQEPGQVLDLSANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSLANIPVLLWRTGEQSWRILPRASFTEHTVHWLIDAMSEFSAAEVA 200
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195     


Chain D from PDB  Type:PROTEIN  Length:91
 aligned with Q50LF1_9CORY | Q50LF1 from UniProtKB/TrEMBL  Length:99

    Alignment length:91
                                    10        20        30        40        50        60        70        80        90 
         Q50LF1_9CORY     1 MMLIECPNCGPRNENEFKYGGEAHVAYPEDPNALSDKEWSRYLFYRGNKKGIFAERWVHSGGCRKWFNALRDTVSYEFKAVYRAGEARPQL  91
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eeee.hhheeeee.......hhhhhhhhhhhhhhhh......eeeeeee.......eeeeeee.....eeeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 3ad7 D   1 MMLIECPNCGPRNENEFKYGGEAHVAYPEDPNALSDKEWSRYLFYRGNKKGIFAERWVHSGGCRKWFNALRDTVSYEFKAVYRAGEARPQL  91
                                    10        20        30        40        50        60        70        80        90
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3AD7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3AD7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3AD7)

(-) Gene Ontology  (6, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q50LF0_9CORY | Q50LF0)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0008115    sarcosine oxidase activity    Catalysis of the reaction: H(2)O + O(2) + sarcosine = formaldehyde + glycine + H(2)O(2).
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0046653    tetrahydrofolate metabolic process    The chemical reactions and pathways involving tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group.

Chain B   (Q50LF2_9CORY | Q50LF2)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0008115    sarcosine oxidase activity    Catalysis of the reaction: H(2)O + O(2) + sarcosine = formaldehyde + glycine + H(2)O(2).
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0046653    tetrahydrofolate metabolic process    The chemical reactions and pathways involving tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group.

Chain C   (Q50LE9_9CORY | Q50LE9)

Chain D   (Q50LF1_9CORY | Q50LF1)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008115    sarcosine oxidase activity    Catalysis of the reaction: H(2)O + O(2) + sarcosine = formaldehyde + glycine + H(2)O(2).
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0046653    tetrahydrofolate metabolic process    The chemical reactions and pathways involving tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Q50LE9_9CORY | Q50LE9: 1vrq 1x31 3ad8 3ad9 3ada
        Q50LF0_9CORY | Q50LF0: 1vrq 1x31 3ad8 3ad9 3ada
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(-) Related Entries Specified in the PDB File

1vrq THE SAME PROTEIN COMPLEXED WITH FOLINIC ACID
1x31 THE SAME PROTEIN COMPLEXED WITH DIMETHYLGLYCINE
3ad8
3ad9
3ada