1VRQ - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Biol.Unit 2 - manually (Jmol Viewer)

Biol.Unit 3 - manually (Jmol Viewer)

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HETEROTETRAMERIC SARCOSINE OXIDASE FROM CORYNEBACTERIUM SP. U-96 IN COMPLEX WITH FOLINIC ACID

Authors :   K. Ida, T. Moriguchi, H. Suzuki

Date :   27 Apr 05 (Deposition) - 05 Jul 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: A,B,C,D  (2x)
Biol. Unit 3: A,B,C,D  (2x)

Keywords :   Heterotetrameric Sarcosine Oxidase, Flavoenzyme, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Ida, T. Moriguchi, H. Suzuki
Crystal Structure Of Heterotetrameric Sarcosine Oxidase Fro Corynebacterium Sp. U-96
Biochem. Biophys. Res. Commun. V. 333 359 2005
PubMed-ID: 15946648 | Reference-DOI: 10.1016/J.BBRC.2005.05.116

Molecule 1 - SARCOSINE OXIDASE ALPHA SUBUNIT
	Chains	:	A
	EC Number	:	1.5.3.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET31B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	CORYNEBACTERIUM SP.
	Organism Taxid	:	31944
	Strain	:	U-96

Molecule 2 - SARCOSINE OXIDASE BETA SUBUNIT
	Chains	:	B
	EC Number	:	1.5.3.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET31B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	CORYNEBACTERIUM SP.
	Organism Taxid	:	31944
	Strain	:	U-96

Molecule 3 - SARCOSINE OXIDASE GAMMA SUBUNIT
	Chains	:	C
	EC Number	:	1.5.3.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET31B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 1-200
	Organism Scientific	:	CORYNEBACTERIUM SP.
	Organism Taxid	:	31944
	Strain	:	U-96

Molecule 4 - SARCOSINE OXIDASE DELTA SUBUNIT
	Chains	:	D
	EC Number	:	1.5.3.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET31B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	CORYNEBACTERIUM SP.
	Organism Taxid	:	31944
	Strain	:	U-96

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (2x)	:	A	B	C	D
Biological Unit 3 (2x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (7, 19)

No.	Name	Count	Type	Full Name
1	DMG	1	Ligand/Ion	N,N-DIMETHYLGLYCINE
2	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	FMN	1	Ligand/Ion	FLAVIN MONONUCLEOTIDE
4	FON	1	Ligand/Ion	FOLINIC ACID
5	NAD	1	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
6	SO4	13	Ligand/Ion	SULFATE ION
7	ZN	1	Ligand/Ion	ZINC ION

Biological Unit 1 (6, 18)

No.	Name	Count	Type	Full Name
1	DMG	1	Ligand/Ion	N,N-DIMETHYLGLYCINE
2	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	FMN	1	Ligand/Ion	FLAVIN MONONUCLEOTIDE
4	FON	1	Ligand/Ion	FOLINIC ACID
5	NAD	1	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
6	SO4	13	Ligand/Ion	SULFATE ION
7	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (6, 36)

No.	Name	Count	Type	Full Name
1	DMG	2	Ligand/Ion	N,N-DIMETHYLGLYCINE
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE
4	FON	2	Ligand/Ion	FOLINIC ACID
5	NAD	2	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
6	SO4	26	Ligand/Ion	SULFATE ION
7	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (6, 36)

No.	Name	Count	Type	Full Name
1	DMG	2	Ligand/Ion	N,N-DIMETHYLGLYCINE
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE
4	FON	2	Ligand/Ion	FOLINIC ACID
5	NAD	2	Ligand/Ion	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
6	SO4	26	Ligand/Ion	SULFATE ION
7	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS D:6 , CYS D:9 , HIS D:59 , CYS D:63	BINDING SITE FOR RESIDUE ZN D 1006
02	AC2	SOFTWARE	GLN A:30 , ALA C:25 , GLY C:26 , GLU C:27 , ARG C:28	BINDING SITE FOR RESIDUE SO4 C 2001
03	AC3	SOFTWARE	ARG A:574 , ALA A:696 , ALA A:697 , THR A:722 , HOH A:3682 , HOH A:4041 , HOH A:4141 , ARG C:176	BINDING SITE FOR RESIDUE SO4 A 2002
04	AC4	SOFTWARE	LYS A:446 , ILE A:447 , HOH A:3533	BINDING SITE FOR RESIDUE SO4 A 2003
05	AC5	SOFTWARE	ASN B:13 , ASN B:14 , HOH B:3320	BINDING SITE FOR RESIDUE SO4 B 2004
06	AC6	SOFTWARE	THR A:709 , HIS D:24 , ASN D:68 , ALA D:84 , GLY D:85 , HOH D:3297 , HOH D:3794 , HOH D:4008	BINDING SITE FOR RESIDUE SO4 D 2005
07	AC7	SOFTWARE	HIS B:7 , LYS B:171 , HIS B:174 , LYS B:277 , HOH B:3358 , HOH B:3710 , HOH B:3942 , HOH B:4011	BINDING SITE FOR RESIDUE SO4 B 2006
08	AC8	SOFTWARE	ASN A:651 , GLY A:652 , SER A:847 , LEU A:849 , HOH A:3539 , HOH A:3781 , HOH A:3807	BINDING SITE FOR RESIDUE SO4 A 2007
09	AC9	SOFTWARE	ARG A:929 , ASN A:930	BINDING SITE FOR RESIDUE SO4 A 2008
10	BC1	SOFTWARE	GLN A:217 , ARG A:219 , HOH A:3107 , VAL C:199	BINDING SITE FOR RESIDUE SO4 A 2009
11	BC2	SOFTWARE	SER A:1 , LYS A:285 , LEU A:349 , SER A:350 , ALA A:371 , ASP A:372 , HOH A:4103	BINDING SITE FOR RESIDUE SO4 A 2010
12	BC3	SOFTWARE	GLN A:489 , ASP A:493 , TYR A:511 , THR A:512 , HIS B:7	BINDING SITE FOR RESIDUE SO4 A 2011
13	BC4	SOFTWARE	ARG C:119 , THR C:153 , SER D:60 , GLY D:62 , HOH D:3782	BINDING SITE FOR RESIDUE SO4 D 2012
14	BC5	SOFTWARE	SER A:7 , ALA A:8	BINDING SITE FOR RESIDUE SO4 A 2013
15	BC6	SOFTWARE	VAL B:26 , GLY B:27 , GLY B:29 , GLY B:30 , HIS B:31 , LEU B:51 , GLU B:52 , LYS B:53 , GLY B:59 , ASN B:60 , MET B:61 , ARG B:63 , ASN B:64 , THR B:65 , THR B:66 , ILE B:67 , CYS B:194 , VAL B:196 , ALA B:224 , GLY B:225 , ALA B:226 , HIS B:228 , LEU B:232 , LEU B:247 , ALA B:249 , GLY B:353 , THR B:354 , GLY B:355 , GLY B:356 , PHE B:357 , LYS B:358 , DMG B:1005 , HOH B:3007 , HOH B:3159 , HOH B:3577 , HOH B:3698	BINDING SITE FOR RESIDUE FAD B 1001
16	BC7	SOFTWARE	GLY A:134 , GLY A:136 , PRO A:137 , ALA A:138 , ASP A:157 , GLU A:158 , ARG A:159 , GLY A:164 , THR A:165 , THR A:202 , VAL A:204 , ALA A:247 , THR A:248 , ALA A:249 , SER A:294 , PHE A:380 , GLY A:416 , ALA A:417 , LEU A:422 , ASP A:423 , THR A:424 , TYR A:553 , HOH A:3003 , HOH A:3005 , HOH A:3019 , HOH A:3039 , HOH A:3191 , HOH A:3212 , HOH A:3540	BINDING SITE FOR RESIDUE NAD A 1002
17	BC8	SOFTWARE	LEU A:631 , TYR A:663 , ASP A:676 , GLY A:677 , HIS A:690 , THR A:691 , ILE A:774 , SER A:775 , PHE A:776 , GLU A:783 , LYS A:822 , PHE A:824 , TRP A:844	BINDING SITE FOR RESIDUE FON A 1003
18	BC9	SOFTWARE	LYS A:509 , ARG A:510 , THR A:516 , GLN A:520 , THR A:548 , ARG A:550 , ALA B:62 , ARG B:63 , ASN B:64 , THR B:66 , HIS B:172 , VAL B:251 , LYS B:277 , GLU B:279 , ARG B:322 , TRP B:324 , HOH B:3042 , HOH B:3059 , HOH B:3084 , HOH B:3295 , HOH B:3449 , HOH B:3520	BINDING SITE FOR RESIDUE FMN B 1004
19	CC1	SOFTWARE	THR B:65 , ILE B:67 , ARG B:69 , MET B:264 , THR B:354 , LYS B:358 , ALA B:401 , FAD B:1001 , HOH B:3224	BINDING SITE FOR RESIDUE DMG B 1005

(no "SS Bond" information available for 1VRQ)

Asymmetric Unit

No.	Residues
1	Ala A:551	-	Pro A:552

(no "SAP(SNP)/Variant" information available for 1VRQ)

(no "PROSITE Motif" information available for 1VRQ)

(no "Exon" information available for 1VRQ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:963
 aligned with Q50LF0_9CORY | Q50LF0 from UniProtKB/TrEMBL  Length:965

    Alignment length:963
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961   
         Q50LF0_9CORY     2 SKPQRLSAAQTAGARINRDEALTLTVDGQQLSAFRGDTVASAMLANGLRSCGNSMYLDRPRGIFSAGVEEPNALITVGARHQADINESMLPATTVSVTDGLNATLLSGLGVLDPSEDPAYYDHVHVHTDVLVVGAGPAGLAAAREASRSGARVMLLDERPEAGGTLREASGEQIDGIDAAQWIDAVTEELAAAEETTHLQRTTVFGSYDANYILAAQRRTVHLDGPSGQGVSRERIWHIRAKQVVLATAAHERPIVFENNDRPGIMLAGSVRSYLNRFGVRAGSKIAVATTNDSVYPLVSELAASGGVVAVIDARQNISAAAAQAVTDGVTVLTGSVVANTEADASGELSAVLVATLDEQRNLGEAQRFEADVLAVSGGFNPVVHLHSQRQGKLNWDTSIHAFVPADAVANQHLAGALTGLLDTASALSTGAATGAAAASAAGFEKIAEVPQALAVPAGETRPVWLVPSLSGDDAVHYKFHFVDLQRDQTVADVLRATGAGMQSVEHIKRYTSISTANDQGKTSGVAAIGVIAAVLGIENPAQIGTTTFRAPYTPVSFAALAGRTRGELLDPARLTAMHPWHLAHGAKFEDVGQWKRPWYYPQDGESMDEAVYRECKAVRDSVGMLDASTLGKIEIRGKDAAEFLNRMYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLRLAEDRFLMHTTTGGAADVLDWLEEWLQTEWPELDVTCTSVTEQLATVAVVGPRSRDVIAKLASSLDVSNDAFKFMAFQDVTLDSGIEARISRISFSGELAFEIAIPAWHGLQVWEDVYAAGQEFNITPYGTETMHVLRAEKGFIIVGQDTDGTVTPQDAGMEWVVSKLKDFVGKRSFSREDNVREDRKHLVSVLPVDSSLRLAEGAALVAADAVASEGVTPMEGWVTHAYNSPALGRTFGLALIKNGRNRIGEVLKTPVDGQLVDVQVSDLVLFDPEGSRRD 964
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------Fer2_4-1vrqA02 A:19-107                                                                  ---------------------FAD_oxidored-1vrqA03 A:129-222                                                                ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCV_T-1vrqA01 A:625-845                                                                                                                                                                                                      ----GCV_T_C-1vrqA04 A:850-952                                                                              ----------- Pfam domains
         Sec.struct. author ...ee...........eeeeeeeeee..eeeeeee..hhhhhhhhh...........................eeee.........eeeee.........eeeee...............eeeeeeeeeeeee..hhhhhhhhhhhhhh...eeee......hhhhhhh...ee..eehhhhhhhhhhhhhhh..eeee..eeeeeee...eeeeeee...............eeeeeeeeeeeee...eee............eeehhhhhhhhhh..ee....eeeee.hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhh...ee..eeeeeeee.....eeeeeeee..........eeee..eeeee..eee.hhhhhhh...eeee....eeee......eee.hhhhh..hhhhhhhhhhhhhhhhhhhh...............................hhhhhh..eee....eehhhhhhhhhh...hhhhhhhhhh..........hhhhhhhhhhhhh...hhhhhh..........eehhhhhh..hhhhhh......hhhhhhhh..eeeee..eeeeee......hhhhhhhhhhhhhhhh.eeee....eeeeee..hhhhhhhhhh...........eeeeeee.....eeeeeeeeeee..eeeeee...hhhhhhhhhhhhhhhh......eeee....eeeeeee..hhhhhhhhhh..............eeeee.....eeeee........eeeeeee..hhhhhhhhhhhhhhhhh.ee.hhhhhhhhhhh....................hhhhh.......hhhhhhhhhhhh....eeeeeee...........eeee.............eeeeeeeee....eeeeeeee.hhhhh...eeeeee..eeeeeeee............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vrq A   1 SKPQRLSAAQTAGARINRDEALTLTVDGQQLSAFRGDTVASAMLANGLRSCGNSMYLDRPRGIFSAGVEEPNALITVGARHQADINESMLPATTVSVTDGLNATLLSGLGVLDPSEDPAYYDHVHVHTDVLVVGAGPAGLAAAREASRSGARVMLLDERPEAGGTLREASGEQIDGIDAAQWIDAVTEELAAAEETTHLQRTTVFGSYDANYILAAQRRTVHLDGPSGQGVSRERIWHIRAKQVVLATAAHERPIVFENNDRPGIMLAGSVRSYLNRFGVRAGSKIAVATTNDSVYPLVSELAASGGVVAVIDARQNISAAAAQAVTDGVTVLTGSVVANTEADASGELSAVLVATLDEQRNLGEAQRFEADVLAVSGGFNPVVHLHSQRQGKLNWDTSIHAFVPADAVANQHLAGALTGLLDTASALSTGAATGAAAASAAGFEKIAEVPQALAVPAGETRPVWLVPSLSGDDAVHYKFHFVDLQRDQTVADVLRATGAGMQSVEHIKRYTSISTANDQGKTSGVAAIGVIAAVLGIENPAQIGTTTFRAPYTPVSFAALAGRTRGELLDPARLTAMHPWHLAHGAKFEDVGQWKRPWYYPQDGESMDEAVYRECKAVRDSVGMLDASTLGKIEIRGKDAAEFLNRMYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLRLAEDRFLMHTTTGGAADVLDWLEEWLQTEWPELDVTCTSVTEQLATVAVVGPRSRDVIAKLASSLDVSNDAFKFMAFQDVTLDSGIEARISRISFSGELAFEIAIPAWHGLQVWEDVYAAGQEFNITPYGTETMHVLRAEKGFIIVGQDTDGTVTPQDAGMEWVVSKLKDFVGKRSFSREDNVREDRKHLVSVLPVDSSLRLAEGAALVAADAVASEGVTPMEGWVTHAYNSPALGRTFGLALIKNGRNRIGEVLKTPVDGQLVDVQVSDLVLFDPEGSRRD 963
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960

Chain B from PDB  Type:PROTEIN  Length:402
 aligned with Q50LF2_9CORY | Q50LF2 from UniProtKB/TrEMBL  Length:405

    Alignment length:402
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401  
         Q50LF2_9CORY     2 ADLLPEHPEFLWNNPEPKKSYDVVIVGGGGHGLATAYYLAKNHGITNVAVLEKGWLAGGNMARNTTIIRSNYLWDESAGIYEKSLKLWEELPEELEYDFLFSQRGVLNLAHTLGDVRESIRRVEANKFNGVDAEWLTPEQVKEVCPIINTGDNIRYPVMGATYQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFLKDGEKVTGVKTTRGTILAGKVALAGAGHSSVLAELAGFELPIQSHPLQALVSELFEPVHPTVVMSNHIHVYVSQAHKGELVMGAGIDSYNGYGQRGAFHVIEEQMAAAVELFPIFARAHVLRTWGGIVDTTMDASPIISKTPIQNLYVNCGWGTGGFKGTPGAGYTLAHTIAHDEPHKLNAPFALERFETGHLIDEHGAAAV 403
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ---------------------DAO-1vrqB01 B:22-370                                                                                                                                                                                                                                                                                                                                         -------------------------------- Pfam domains
         Sec.struct. author ...................eeeeeee..hhhhhhhhhhhhhh.....eeee.......hhhhh..........hhhhhhhhhhhhhhhhhhhhhh..........eeeee.hhhhhhhhhhhhhhhhh.....eeehhhhhhhhh..............eeeee......hhhhhhhhhhhhhhhh..eee....eeeeee....eeeeee..eeeeeeeeee.hhhhhhhhhhhhh....eeeeeeeeeeeee.......eeee....eeeee....eeeeeeee...........hhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeee.....eeee.....eeeee........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1vrq B   1 ADLLPEHPEFLWNNPEPKKSYDVVIVGGGGHGLATAYYLAKNHGITNVAVLEKGWLAGGNMARNTTIIRSNYLWDESAGIYEKSLKLWEELPEELEYDFLFSQRGVLNLAHTLGDVRESIRRVEANKFNGVDAEWLTPEQVKEVCPIINTGDNIRYPVMGATYQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFLKDGEKVTGVKTTRGTILAGKVALAGAGHSSVLAELAGFELPIQSHPLQALVSELFEPVHPTVVMSNHIHVYVSQAHKGELVMGAGIDSYNGYGQRGAFHVIEEQMAAAVELFPIFARAHVLRTWGGIVDTTMDASPIISKTPIQNLYVNCGWGTGGFKGTPGAGYTLAHTIAHDEPHKLNAPFALERFETGHLIDEHGAAAV 402
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400

Chain C from PDB  Type:PROTEIN  Length:195
 aligned with Q50LE9_9CORY | Q50LE9 from UniProtKB/TrEMBL  Length:205

    Alignment length:195
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200     
         Q50LE9_9CORY    11 QLRRSPAAHLAAAMEAAEVAGERAVTLREVAFTTQLGLRAVPGSTGHAALAAATGVGLPAAVGEVAGDVSGTAVLWLGPDEFLLAAEENPALLDTLQGALGQEPGQVLDLSANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSLANIPVLLWRTGEQSWRILPRASFTEHTVHWLIDAMSEFSAAEVA 205
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------SoxG-1vrqC01 C:44-193                                                                                                                                 ------- Pfam domains
         Sec.struct. author ......hhhhhhhhhh.........eeee....eeeeee....hhhhhhhhhhh..........eee.....eeeeee..eeeeee...hhhhhhhhhhhh....eeee.......eeee..hhhhhhh...............eeeeeee..eeeeeeeee..eeeee.hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vrq C   6 QLRRSPAAHLAAAMEAAEVAGERAVTLREVAFTTQLGLRAVPGSTGHAALAAATGVGLPAAVGEVAGDVSGTAVLWLGPDEFLLAAEENPALLDTLQGALGQEPGQVLDLSANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSLANIPVLLWRTGEQSWRILPRASFTEHTVHWLIDAMSEFSAAEVA 200
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195

Chain D from PDB  Type:PROTEIN  Length:91
 aligned with Q50LF1_9CORY | Q50LF1 from UniProtKB/TrEMBL  Length:99

    Alignment length:91
                                    10        20        30        40        50        60        70        80        90 
         Q50LF1_9CORY     1 MMLIECPNCGPRNENEFKYGGEAHVAYPEDPNALSDKEWSRYLFYRGNKKGIFAERWVHSGGCRKWFNALRDTVSYEFKAVYRAGEARPQL  91
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --SoxD-1vrqD01 D:3-86                                                                 ----- Pfam domains
         Sec.struct. author ..eeee...eeee.hhheeeee.......hhhhhhhhhhhhhhhh......eeeeeee.......eeeeeee.....eeeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 1vrq D   1 MMLIECPNCGPRNENEFKYGGEAHVAYPEDPNALSDKEWSRYLFYRGNKKGIFAERWVHSGGCRKWFNALRDTVSYEFKAVYRAGEARPQL  91
                                    10        20        30        40        50        60        70        80        90

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 1VRQ)

(no "CATH Domain" information available for 1VRQ)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: FBD (14)

Family: GCV_T (12)

Corynebacterium sp. U-96 (2)

GCV_T-1vrqA01

A:625-845

Family: SoxG (2)

Corynebacterium sp. U-96 (2)

SoxG-1vrqC01

C:44-193

Clan: Fer2 (69)

Family: Fer2_4 (3)

Corynebacterium sp. U-96 (2)

Fer2_4-1vrqA02

A:19-107

Clan: NADP_Rossmann (1239)

Family: DAO (25)

Corynebacterium sp. U-96 (2)

DAO-1vrqB01

B:22-370

Family: FAD_oxidored (2)

Corynebacterium sp. U-96 (2)

FAD_oxidored-1vrqA03

A:129-222

Clan: no clan defined [family: GCV_T_C] (10)

Family: GCV_T_C (10)

Corynebacterium sp. U-96 (2)

GCV_T_C-1vrqA04

A:850-952

Clan: no clan defined [family: SoxD] (2)

Family: SoxD (2)

Corynebacterium sp. U-96 (2)

SoxD-1vrqD01

D:3-86

Asymmetric Unit(hide GO term definitions)

Chain A (Q50LF0_9CORY | Q50LF0)

molecular function
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0008115	sarcosine oxidase activity	Catalysis of the reaction: H(2)O + O(2) + sarcosine = formaldehyde + glycine + H(2)O(2).
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0046653	tetrahydrofolate metabolic process	The chemical reactions and pathways involving tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group.

Chain B (Q50LF2_9CORY | Q50LF2)

molecular function
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0008115	sarcosine oxidase activity	Catalysis of the reaction: H(2)O + O(2) + sarcosine = formaldehyde + glycine + H(2)O(2).
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0046653	tetrahydrofolate metabolic process	The chemical reactions and pathways involving tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group.

Chain C (Q50LE9_9CORY | Q50LE9)

Chain D (Q50LF1_9CORY | Q50LF1)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008115	sarcosine oxidase activity	Catalysis of the reaction: H(2)O + O(2) + sarcosine = formaldehyde + glycine + H(2)O(2).
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0046653	tetrahydrofolate metabolic process	The chemical reactions and pathways involving tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Ala A:551 - Pro A:552	[ RasMol ]

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	1vrq
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Access by UniProt ID/Accession number
	Q50LE9_9CORY \| Q50LE9
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	Q50LF0_9CORY \| Q50LF0
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	Q50LF1_9CORY \| Q50LF1
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	Q50LF2_9CORY \| Q50LF2
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	1.5.3.1
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		Domain Information	:	XDom
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	Q50LE9_9CORY \| Q50LE9
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	Q50LF0_9CORY \| Q50LF0
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	Q50LF1_9CORY \| Q50LF1
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	Q50LF2_9CORY \| Q50LF2
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UniProtKB/TrEMBL
	Q50LE9_9CORY \| Q50LE9	:	1x31 3ad7 3ad8 3ad9 3ada
	Q50LF0_9CORY \| Q50LF0	:	1x31 3ad7 3ad8 3ad9 3ada
	Q50LF1_9CORY \| Q50LF1	:	1x31 3ad7 3ad8 3ad9 3ada
	Q50LF2_9CORY \| Q50LF2	:	1x31 3ad7 3ad8 3ad9 3ada

1el5
1l9f
1pj5
1pj6
1pj7
1woo
1x31	THE SAME PROTEIN

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 19)

Sites (19, 19)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (7, 7)

Gene Ontology (6, 14)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File