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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PROBABLE THIOSULFATE SULFURTRANSFERASE CYSA3 (RV3117) FROM MYCOBACTERIUM TUBERCULOSIS: MONOCLINIC FORM

Authors :   R. Sankaranarayanan, S. J. Witholt, M. M. Cherney, C. R. Garen, L. T. Cherney, M. N. G. James, Tb Structural Genomics Consortium (Tbsgc)

Date :   28 Nov 09 (Deposition) - 08 Dec 09 (Release) - 08 Dec 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   X-Ray Crystallography, M. Tuberculosis, Sulfurtransferase, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium (Tbsgc), Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Sankaranarayanan, S. J. Witholt, M. M. Cherney, C. R. Garen, L. T. Cherney, M. N. G. James
The Crystal Structure Of Probable Thiosulfate Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium Tuberculosis
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - PUTATIVE THIOSULFATE SULFURTRANSFERASE
	Chains	:	A, B
	EC Number	:	2.8.1.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PDEST-17
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	CYSA3
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	1773
	Strain	:	H37RV
	Synonym	:	RHODANESE-LIKE PROTEIN

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3AAX)

(no "Site" information available for 3AAX)

(no "SS Bond" information available for 3AAX)

(no "Cis Peptide Bond" information available for 3AAX)

(no "SAP(SNP)/Variant" information available for 3AAX)

Asymmetric Unit (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RHODANESE_3	PS50206	Rhodanese domain profile.	THTR_MYCTO	18-125 154-274	4	A:18-125 B:18-125 A:154-274 B:154-274
1	RHODANESE_3	PS50206	Rhodanese domain profile.	THTR_MYCTU	18-125 154-274	4	A:18-125 B:18-125 A:154-274 B:154-274
2	RHODANESE_2	PS00683	Rhodanese C-terminal signature.	THTR_MYCTO	255-265	2	A:255-265 B:255-265
2	RHODANESE_2	PS00683	Rhodanese C-terminal signature.	THTR_MYCTU	255-265	2	A:255-265 B:255-265

Biological Unit 1 (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RHODANESE_3	PS50206	Rhodanese domain profile.	THTR_MYCTO	18-125 154-274	2	A:18-125 - A:154-274 -
1	RHODANESE_3	PS50206	Rhodanese domain profile.	THTR_MYCTU	18-125 154-274	2	A:18-125 - A:154-274 -
2	RHODANESE_2	PS00683	Rhodanese C-terminal signature.	THTR_MYCTO	255-265	1	A:255-265 -
2	RHODANESE_2	PS00683	Rhodanese C-terminal signature.	THTR_MYCTU	255-265	1	A:255-265 -

Biological Unit 2 (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RHODANESE_3	PS50206	Rhodanese domain profile.	THTR_MYCTO	18-125 154-274	2	- B:18-125 - B:154-274
1	RHODANESE_3	PS50206	Rhodanese domain profile.	THTR_MYCTU	18-125 154-274	2	- B:18-125 - B:154-274
2	RHODANESE_2	PS00683	Rhodanese C-terminal signature.	THTR_MYCTO	255-265	1	- B:255-265
2	RHODANESE_2	PS00683	Rhodanese C-terminal signature.	THTR_MYCTU	255-265	1	- B:255-265

(no "Exon" information available for 3AAX)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:272
 aligned with THTR_MYCTO | P9WHF8 from UniProtKB/Swiss-Prot  Length:277

    Alignment length:274
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273    
           THTR_MYCTO     4 CDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS 277
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3aaxA01 A:4-141 Oxidized Rhodanese, domain 1                                                                                              3aaxA02 A:142-277 Oxidized Rhodanese,   domain 1                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eehhhhhhh......eeeeeee..............eeee..............hhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhh....eeee.hhhhhhhhh.....................hhhhh.hhhhhhhh....eeee..hhhhhh.........--............ee.hhhhhh.......hhhhhhhhhhhhh......eeee...hhhhhhhhhhhhhh.....eeee.hhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------RHODANESE_3  PDB: A:18-125 UniProt: 18-125                                                                  ----------------------------RHODANESE_3  PDB: A:154-274 UniProt: 154-274                                                                             --- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RHODANESE_2------------ PROSITE (4)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3aax A   4 CDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAPAHL--EQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS 277
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173     | 183       193       203       213       223       233       243       253       263       273    
                                                                                                                                                                                                         179  |                                                                                               
                                                                                                                                                                                                            182

Chain A from PDB  Type:PROTEIN  Length:272
 aligned with THTR_MYCTU | P9WHF9 from UniProtKB/Swiss-Prot  Length:277

    Alignment length:274
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273    
           THTR_MYCTU     4 CDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS 277
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3aaxA01 A:4-141 Oxidized Rhodanese, domain 1                                                                                              3aaxA02 A:142-277 Oxidized Rhodanese,   domain 1                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eehhhhhhh......eeeeeee..............eeee..............hhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhh....eeee.hhhhhhhhh.....................hhhhh.hhhhhhhh....eeee..hhhhhh.........--............ee.hhhhhh.......hhhhhhhhhhhhh......eeee...hhhhhhhhhhhhhh.....eeee.hhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------RHODANESE_3  PDB: A:18-125 UniProt: 18-125                                                                  ----------------------------RHODANESE_3  PDB: A:154-274 UniProt: 154-274                                                                             --- PROSITE (2)
                PROSITE (3) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RHODANESE_2------------ PROSITE (3)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3aax A   4 CDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAPAHL--EQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS 277
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173     | 183       193       203       213       223       233       243       253       263       273    
                                                                                                                                                                                                         179  |                                                                                               
                                                                                                                                                                                                            182

Chain B from PDB  Type:PROTEIN  Length:276
 aligned with THTR_MYCTO | P9WHF8 from UniProtKB/Swiss-Prot  Length:277

    Alignment length:277
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       
           THTR_MYCTO     1 MARCDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS 277
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3aaxB01 B:1-141 Oxidized Rhodanese, domain 1                                                                                                 3aaxB02 B:142-277 Oxidized Rhodanes e, domain 1                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eehhhhhhhh.....eeeeeee..hhhhhhh.....eeee..............hhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhh....................hhhhh.hhhhhhh.....eeee..hhhhhhh.....-................ee.hhhhhh.......hhhhhhhhhhhh.......eeee...hhhhhhhhhhhhhh.....eee..hhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------RHODANESE_3  PDB: B:18-125 UniProt: 18-125                                                                  ----------------------------RHODANESE_3  PDB: B:154-274 UniProt: 154-274                                                                             --- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RHODANESE_2------------ PROSITE (4)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3aax B   1 MARCDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAP-HLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS 277
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     | 180       190       200       210       220       230       240       250       260       270       
                                                                                                                                                                                                         176 |                                                                                                   
                                                                                                                                                                                                           178

Chain B from PDB  Type:PROTEIN  Length:276
 aligned with THTR_MYCTU | P9WHF9 from UniProtKB/Swiss-Prot  Length:277

    Alignment length:277
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       
           THTR_MYCTU     1 MARCDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS 277
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3aaxB01 B:1-141 Oxidized Rhodanese, domain 1                                                                                                 3aaxB02 B:142-277 Oxidized Rhodanes e, domain 1                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eehhhhhhhh.....eeeeeee..hhhhhhh.....eeee..............hhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhh....................hhhhh.hhhhhhh.....eeee..hhhhhhh.....-................ee.hhhhhh.......hhhhhhhhhhhh.......eeee...hhhhhhhhhhhhhh.....eee..hhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----------------RHODANESE_3  PDB: B:18-125 UniProt: 18-125                                                                  ----------------------------RHODANESE_3  PDB: B:154-274 UniProt: 154-274                                                                             --- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RHODANESE_2------------ PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3aax B   1 MARCDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAP-HLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS 277
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     | 180       190       200       210       220       230       240       250       260       270       
                                                                                                                                                                                                         176 |                                                                                                   
                                                                                                                                                                                                           178

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3AAX)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Oxidized Rhodanese; domain 1 (42)

Homologous Superfamily: Oxidized Rhodanese, domain 1 (42)

Mycobacterium tuberculosis. Organism_taxid: 1773. Strain: h37rv. (3)

1a	3aaxB01	B:1-141
1b	3aaxB02	B:142-277
1c	3aaxA02	A:142-277
1d	3aaxA01	A:4-141

(no "Pfam Domain" information available for 3AAX)

Asymmetric Unit(hide GO term definitions)

Chain A,B (THTR_MYCTU | P9WHF9)

molecular function
	GO:0004792	thiosulfate sulfurtransferase activity	Catalysis of the reaction: hydrogen cyanide + thiosulfate = H(+) + sulfite + thiocyanate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
cellular component
	GO:0005618	cell wall	The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,B (THTR_MYCTO | P9WHF8)

molecular function
	GO:0004792		thiosulfate sulfurtransferase activity		Catalysis of the reaction: hydrogen cyanide + thiosulfate = H(+) + sulfite + thiocyanate.
	GO:0016740		transferase activity		Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

Asymmetric Unit
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	2.8.1.1
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	THTR_MYCTO \| P9WHF8	:	3aay 3hwi
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3aay	RELATED ID: RV3117 RELATED DB: TARGETDB

Description

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