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(-) Description

Title :  CRYSTAL STRUCTURE OF PROBABLE THIOSULFATE SULFURTRANSFERASE CYSA2 (RHODANESE-LIKE PROTEIN) FROM MYCOBACTERIUM TUBERCULOSIS
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  17 Jun 09  (Deposition) - 30 Jun 09  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.29
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Niaid, Ssgcid, Seattle Structural Center For Infectious Disease, Decode, Uw, Sbri, Tuberculosis, Transferase, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
PubMed-ID: 25613812  |  Reference-DOI: 10.1016/J.TUBE.2014.12.003

(-) Compounds

Molecule 1 - THIOSULFATE SULFURTRANSFERASE
    ChainsA, B
    EC Number2.8.1.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneCYSA1, CYSA, RV3117, MT3199, MTCY164.27, CYSA2, RV0815C, MT0837, MTV043.07C
    Organism ScientificMYCOBACTERIUM TUBERCULOSIS
    Organism Taxid1773
    StrainH37RV
    SynonymRHODANESE-LIKE PROTEIN, THIOSULFATE SULFURTRANSFERASE CYSA2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3HWI)

(-) Sites  (0, 0)

(no "Site" information available for 3HWI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HWI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3HWI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HWI)

(-) PROSITE Motifs  (2, 6)

Asymmetric Unit (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RHODANESE_3PS50206 Rhodanese domain profile.THTR_MYCTO18-125
 
154-274
 
  4A:18-125
B:18-125
A:154-274
B:154-274
THTR_MYCTU18-125
 
154-274
 
  4A:18-125
B:18-125
A:154-274
B:154-274
2RHODANESE_2PS00683 Rhodanese C-terminal signature.THTR_MYCTO255-265
 
  2A:255-265
B:255-265
THTR_MYCTU255-265
 
  2A:255-265
B:255-265
Biological Unit 1 (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RHODANESE_3PS50206 Rhodanese domain profile.THTR_MYCTO18-125
 
154-274
 
  2A:18-125
-
A:154-274
-
THTR_MYCTU18-125
 
154-274
 
  2A:18-125
-
A:154-274
-
2RHODANESE_2PS00683 Rhodanese C-terminal signature.THTR_MYCTO255-265
 
  1A:255-265
-
THTR_MYCTU255-265
 
  1A:255-265
-
Biological Unit 2 (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RHODANESE_3PS50206 Rhodanese domain profile.THTR_MYCTO18-125
 
154-274
 
  2-
B:18-125
-
B:154-274
THTR_MYCTU18-125
 
154-274
 
  2-
B:18-125
-
B:154-274
2RHODANESE_2PS00683 Rhodanese C-terminal signature.THTR_MYCTO255-265
 
  1-
B:255-265
THTR_MYCTU255-265
 
  1-
B:255-265

(-) Exons   (0, 0)

(no "Exon" information available for 3HWI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:267
 aligned with THTR_MYCTO | P9WHF8 from UniProtKB/Swiss-Prot  Length:277

    Alignment length:275
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272     
           THTR_MYCTO     3 RCDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS 277
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3hwiA01 A:3-141 Oxidized Rhodanese, domain 1                                                                                               3hwiA02 A:142-277 Oxidized Rhodanes        e, domain 1                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eehhhhhhhh.....eeeeeee..hhhhhhh.....eeee..............hhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhh....eeee.hhhhhhhhh.....................hhh.eehhhhhhhh....eeee..hhhhhhh.....--------.........ee.hhhhhh.......hhhhhhhhhhhhh......eeee...hhhhhhhhhhhhh......eeee.hhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------RHODANESE_3  PDB: A:18-125 UniProt: 18-125                                                                  ----------------------------RHODANESE_3  PDB: A:154-274 UniProt: 154-274                                                                             --- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RHODANESE_2------------ PROSITE (4)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hwi A   3 RCDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAP--------QRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS 277
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172   |     -  |    192       202       212       222       232       242       252       262       272     
                                                                                                                                                                                                       176      185                                                                                            

Chain A from PDB  Type:PROTEIN  Length:267
 aligned with THTR_MYCTU | P9WHF9 from UniProtKB/Swiss-Prot  Length:277

    Alignment length:275
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272     
           THTR_MYCTU     3 RCDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS 277
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3hwiA01 A:3-141 Oxidized Rhodanese, domain 1                                                                                               3hwiA02 A:142-277 Oxidized Rhodanes        e, domain 1                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eehhhhhhhh.....eeeeeee..hhhhhhh.....eeee..............hhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhh....eeee.hhhhhhhhh.....................hhh.eehhhhhhhh....eeee..hhhhhhh.....--------.........ee.hhhhhh.......hhhhhhhhhhhhh......eeee...hhhhhhhhhhhhh......eeee.hhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------RHODANESE_3  PDB: A:18-125 UniProt: 18-125                                                                  ----------------------------RHODANESE_3  PDB: A:154-274 UniProt: 154-274                                                                             --- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RHODANESE_2------------ PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hwi A   3 RCDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAP--------QRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS 277
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172   |     -  |    192       202       212       222       232       242       252       262       272     
                                                                                                                                                                                                       176      185                                                                                            

Chain B from PDB  Type:PROTEIN  Length:271
 aligned with THTR_MYCTO | P9WHF8 from UniProtKB/Swiss-Prot  Length:277

    Alignment length:275
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272     
           THTR_MYCTO     3 RCDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS 277
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3hwiB01 B:3-141 Oxidized Rhodanese, domain 1                                                                                               3hwiB02 B:142-277 Oxidized Rhodanese, d    omain 1                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eehhhhhhhh.....eeeee.....hhhhhh.....ee................hhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhh....eeee.hhhhhhhhh.....................hhh.eehhhhhhhh....eeee..hhhhhhh.........----.........ee.hhhhhh.......hhhhhhhhhhhhh......eeee..hhhhhhhhhhhhhh......eeee.hhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------RHODANESE_3  PDB: B:18-125 UniProt: 18-125                                                                  ----------------------------RHODANESE_3  PDB: B:154-274 UniProt: 154-274                                                                             --- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RHODANESE_2------------ PROSITE (4)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hwi B   3 RCDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAPAHLP----QRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS 277
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       | -  |    192       202       212       222       232       242       252       262       272     
                                                                                                                                                                                                           180  185                                                                                            

Chain B from PDB  Type:PROTEIN  Length:271
 aligned with THTR_MYCTU | P9WHF9 from UniProtKB/Swiss-Prot  Length:277

    Alignment length:275
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272     
           THTR_MYCTU     3 RCDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS 277
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3hwiB01 B:3-141 Oxidized Rhodanese, domain 1                                                                                               3hwiB02 B:142-277 Oxidized Rhodanese, d    omain 1                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eehhhhhhhh.....eeeee.....hhhhhh.....ee................hhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhh....eeee.hhhhhhhhh.....................hhh.eehhhhhhhh....eeee..hhhhhhh.........----.........ee.hhhhhh.......hhhhhhhhhhhhh......eeee..hhhhhhhhhhhhhh......eeee.hhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------RHODANESE_3  PDB: B:18-125 UniProt: 18-125                                                                  ----------------------------RHODANESE_3  PDB: B:154-274 UniProt: 154-274                                                                             --- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RHODANESE_2------------ PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hwi B   3 RCDVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKNLIDVRSPDEFSGKILAPAHLP----QRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS 277
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       | -  |    192       202       212       222       232       242       252       262       272     
                                                                                                                                                                                                           180  185                                                                                            

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3HWI)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HWI)

(-) Gene Ontology  (5, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (THTR_MYCTO | P9WHF8)
molecular function
    GO:0004792    thiosulfate sulfurtransferase activity    Catalysis of the reaction: hydrogen cyanide + thiosulfate = H(+) + sulfite + thiocyanate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

Chain A,B   (THTR_MYCTU | P9WHF9)
molecular function
    GO:0004792    thiosulfate sulfurtransferase activity    Catalysis of the reaction: hydrogen cyanide + thiosulfate = H(+) + sulfite + thiocyanate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
cellular component
    GO:0005618    cell wall    The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        THTR_MYCTO | P9WHF83aax 3aay
        THTR_MYCTU | P9WHF93aax 3aay

(-) Related Entries Specified in the PDB File

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