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(-) Description

Title :  CRYSTAL STRUCTURE OF TTHA1623 IN A DI-IRON-BOUND FORM
 
Authors :  A. Yamamura, A. Okada, Y. Kameda, J. Ohtsuka, N. Nakagawa, A. Ebihara, S. Yokoyama, S. Kuramitsu, K. Nagata, M. Tanokura
Date :  16 Feb 09  (Deposition) - 05 Jan 10  (Release) - 05 Jan 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Metallo-Beta-Lactamase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Yamamura, A. Okada, Y. Kameda, J. Ohtsuka, N. Nakagawa, A. Ebihara, K. Nagata, M. Tanokura
Structure Of Ttha1623, A Novel Metallo-Beta-Lactamase Superfamily Protein From Thermus Thermophilus Hb8
Acta Crystallogr. , Sect. F V. 65 455 2009
PubMed-ID: 19407375  |  Reference-DOI: 10.1107/S174430910901361X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - METALLO-BETA-LACTAMASE SUPERFAMILY PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TTHA1623
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2FE4Ligand/IonFE (III) ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2FE-1Ligand/IonFE (III) ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2FE-1Ligand/IonFE (III) ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:54 , HIS A:56 , HIS A:125 , ASP A:144 , FE A:209 , ACT A:210 , HOH A:211BINDING SITE FOR RESIDUE FE A 208
2AC2SOFTWAREASP A:58 , HIS A:59 , ASP A:144 , HIS A:184 , FE A:208 , ACT A:210 , HOH A:211BINDING SITE FOR RESIDUE FE A 209
3AC3SOFTWAREGLU A:85 , TRP A:94 , ASP A:144 , HIS A:184 , FE A:208 , FE A:209 , HOH A:211BINDING SITE FOR RESIDUE ACT A 210
4AC4SOFTWAREHIS B:54 , HIS B:56 , HIS B:125 , ASP B:144 , FE B:209 , ACT B:210 , HOH B:211BINDING SITE FOR RESIDUE FE B 208
5AC5SOFTWAREASP B:58 , HIS B:59 , ASP B:144 , HIS B:184 , FE B:208 , ACT B:210 , HOH B:211BINDING SITE FOR RESIDUE FE B 209
6AC6SOFTWAREGLU B:85 , TRP B:94 , ASP B:144 , HIS B:184 , FE B:208 , FE B:209 , HOH B:211BINDING SITE FOR RESIDUE ACT B 210

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZZI)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:103 -Pro A:104
2Leu B:103 -Pro B:104

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZZI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ZZI)

(-) Exons   (0, 0)

(no "Exon" information available for 2ZZI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:198
 aligned with Q5SHV7_THET8 | Q5SHV7 from UniProtKB/TrEMBL  Length:207

    Alignment length:198
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192        
         Q5SHV7_THET8     3 VFPVTLGPLQENAYLVETGEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEALDLPVYLHPLDLPLYEGADLAARAWGLAIPKPPLPVRPLEEGMRLFGFQVLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYDLPGADPKALFASLKRLLSLPPETRVHPGHGPGTTLGLEARTNPFL 200
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee....eeeeeeee..eeeee....hhhhhhhhhhhhh.....ee....hhhhhhhhhhhhhhhh..eeehhhhhhhhhhhhhhhhh............ee.....ee..eeeee........eeeee....eeeee..ee..ee........hhhhhhhhhhhhh......eeee.....eehhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2zzi A   3 VFPVTLGPLQENAYLVETGEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEALDLPVYLHPLDLPLYEGADLAARAWGLAIPKPPLPVRPLEEGMRLFGFQVLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYDLPGADPKALFASLKRLLSLPPETRVHPGHGPGTTLGLEARTNPFL 200
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192        


Chain B from PDB  Type:PROTEIN  Length:199
 aligned with Q5SHV7_THET8 | Q5SHV7 from UniProtKB/TrEMBL  Length:207

    Alignment length:199
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192         
         Q5SHV7_THET8     3 VFPVTLGPLQENAYLVETGEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEALDLPVYLHPLDLPLYEGADLAARAWGLAIPKPPLPVRPLEEGMRLFGFQVLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYDLPGADPKALFASLKRLLSLPPETRVHPGHGPGTTLGLEARTNPFLT 201
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----Lactamase_B-2zziB01 B:8-184                                                                                                                                                      ----------------- Pfam domains (1)
           Pfam domains (2) -----Lactamase_B-2zziB02 B:8-184                                                                                                                                                      ----------------- Pfam domains (2)
         Sec.struct. author ...eee....eeeeeeee..eeeee....hhhhhhhhhhhhh.....ee....hhhhhhhhhhhhhhhh..eeehhhhhhhhhhhhhhhhh............ee.....ee..eeeee........eeeee....eeeee..ee..ee........hhhhhhhhhhhhh......eeee.....eehhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zzi B   3 VFPVTLGPLQENAYLVETGEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEALDLPVYLHPLDLPLYEGADLAARAWGLAIPKPPLPVRPLEEGMRLFGFQVLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYDLPGADPKALFASLKRLLSLPPETRVHPGHGPGTTLGLEARTNPFLT 201
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ZZI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ZZI)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: Metallo-HOrase (67)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q5SHV7_THET8 | Q5SHV7)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5SHV7_THET8 | Q5SHV7: 2zwr

(-) Related Entries Specified in the PDB File

2zwr ZINC-BOUND TTHA1623