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(-) Description

Title :  CRYSTAL STRUCTURE OF TTHA1623 FROM THERMUS THERMOPHILUS HB8
 
Authors :  A. Yamamura, A. Okada, Y. Kameda, J. Ohtsuka, N. Nakagawa, A. Ebihara, S. Yokoyama, S. Kuramitsu, K. Nagata, M. Tanokura
Date :  17 Dec 08  (Deposition) - 06 Oct 09  (Release) - 06 Oct 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Metallo-Beta-Lactamase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Yamamura, A. Okada, Y. Kameda, J. Ohtsuka, N. Nakagawa, A. Ebihara, K. Nagata, M. Tanokura
Structure Of Ttha1623, A Novel Metallo-Beta-Lactamase Superfamily Protein From Thermus Thermophilus Hb8
Acta Crystallogr. , Sect. F V. 65 455 2009
PubMed-ID: 19407375  |  Reference-DOI: 10.1107/S174430910901361X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - METALLO-BETA-LACTAMASE SUPERFAMILY PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TTHA1623
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 14)

Asymmetric Unit (1, 14)
No.NameCountTypeFull Name
1ZN14Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:58 , HIS A:59 , ASP A:144 , HIS A:184 , ZN A:209 , HOH A:216BINDING SITE FOR RESIDUE ZN A 208
02AC2SOFTWAREHIS A:54 , HIS A:56 , HIS A:125 , ASP A:144 , ZN A:208 , HOH A:216BINDING SITE FOR RESIDUE ZN A 209
03AC3SOFTWAREASP A:71 , MET B:1BINDING SITE FOR RESIDUE ZN A 210
04AC4SOFTWAREHIS A:121 , GLU B:109BINDING SITE FOR RESIDUE ZN A 211
05AC5SOFTWAREASP A:31 , HOH A:244BINDING SITE FOR RESIDUE ZN A 212
06AC6SOFTWAREGLU A:22 , HOH A:243 , GLU B:68BINDING SITE FOR RESIDUE ZN A 213
07AC7SOFTWAREMET A:1BINDING SITE FOR RESIDUE ZN A 214
08AC8SOFTWAREASP A:160 , ALA B:207BINDING SITE FOR RESIDUE ZN A 215
09AC9SOFTWAREASP B:58 , HIS B:59 , ASP B:144 , HIS B:184 , ZN B:209 , HOH B:214BINDING SITE FOR RESIDUE ZN B 208
10BC1SOFTWAREHIS B:54 , HIS B:56 , HIS B:125 , ASP B:144 , ZN B:208 , HOH B:214BINDING SITE FOR RESIDUE ZN B 209
11BC2SOFTWAREGLU A:109 , HIS B:121BINDING SITE FOR RESIDUE ZN B 210
12BC3SOFTWAREGLU B:85 , GLU B:204BINDING SITE FOR RESIDUE ZN B 211
13BC4SOFTWAREHIS B:181BINDING SITE FOR RESIDUE ZN B 212
14BC5SOFTWAREGLU B:206BINDING SITE FOR RESIDUE ZN B 213

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZWR)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:103 -Pro A:104
2Leu B:103 -Pro B:104

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZWR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ZWR)

(-) Exons   (0, 0)

(no "Exon" information available for 2ZWR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:200
 aligned with Q5SHV7_THET8 | Q5SHV7 from UniProtKB/TrEMBL  Length:207

    Alignment length:200
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200
         Q5SHV7_THET8     1 MRVFPVTLGPLQENAYLVETGEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEALDLPVYLHPLDLPLYEGADLAARAWGLAIPKPPLPVRPLEEGMRLFGFQVLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYDLPGADPKALFASLKRLLSLPPETRVHPGHGPGTTLGLEARTNPFL 200
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....eeeeeeee..eeeee....hhhhhhhhhhhhh.....ee....hhhhh.hhhhhhhhhh..eeehhhhhhhhhhhhhhhhhh...........ee.....ee..eeeee........eeeee....eeeee..ee..ee........hhhhhhhhhhhhh......eeee.....eehhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zwr A   1 MRVFPVTLGPLQENAYLVETGEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEALDLPVYLHPLDLPLYEGADLAARAWGLAIPKPPLPVRPLEEGMRLFGFQVLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYDLPGADPKALFASLKRLLSLPPETRVHPGHGPGTTLGLEARTNPFL 200
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200


Chain B from PDB  Type:PROTEIN  Length:207
 aligned with Q5SHV7_THET8 | Q5SHV7 from UniProtKB/TrEMBL  Length:207

    Alignment length:207
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       
         Q5SHV7_THET8     1 MRVFPVTLGPLQENAYLVETGEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEALDLPVYLHPLDLPLYEGADLAARAWGLAIPKPPLPVRPLEEGMRLFGFQVLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYDLPGADPKALFASLKRLLSLPPETRVHPGHGPGTTLGLEARTNPFLTGLEWEA 207
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------Lactamase_B-2zwrB01 B:8-184                                                                                                                                                      ----------------------- Pfam domains (1)
           Pfam domains (2) -------Lactamase_B-2zwrB02 B:8-184                                                                                                                                                      ----------------------- Pfam domains (2)
         Sec.struct. author ..eeeeee....eeeeee......eee....hhhhhhhhhhhhh.....ee....hhhhhhhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhh...........ee.....ee..eeeee........eeeee....eeeee..ee..ee........hhhhhhhhhhhhh......eeee.....eehhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zwr B   1 MRVFPVTLGPLQENAYLVETGEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEALDLPVYLHPLDLPLYEGADLAARAWGLAIPKPPLPVRPLEEGMRLFGFQVLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYDLPGADPKALFASLKRLLSLPPETRVHPGHGPGTTLGLEARTNPFLTGLEWEA 207
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ZWR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ZWR)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: Metallo-HOrase (67)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q5SHV7_THET8 | Q5SHV7)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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