Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  RECOMBINANT THIOCYANATE HYDROLASE, AIR-OXIDIZED FORM OF HOLO-ENZYME
 
Authors :  T. Arakawa, Y. Kawano, Y. Katayama, M. Yohda, M. Odaka
Date :  09 Feb 09  (Deposition) - 13 Oct 09  (Release) - 20 Oct 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.78
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Scnase, Hydrolase, Cobalt, Metalloprotein, Sulfenic Acid, Sulfinic Acid, Nitrile Hydratase, Thiocyanate, Carbonyl Sulfide, Claw Setting, Protein, Enzyme, Complex, Model Complex, Non-Corrin, Post-Translational Modification, Sulfenate, Sulfinate, Cysteine, Oxidation, Autocatalytic Activation, Air Inactivation, Metal-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Arakawa, Y. Kawano, Y. Katayama, H. Nakayama, N. Dohmae, M. Yohda, M. Odaka
Structural Basis For Catalytic Activation Of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification
J. Am. Chem. Soc. V. 131 14838 2009
PubMed-ID: 19785438  |  Reference-DOI: 10.1021/JA903979S
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - THIOCYANATE HYDROLASE SUBUNIT ALPHA
    Chains: A, D, G, J
    EC Number: 3.5.5.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30A
    Expression System Strain: BL21AI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SCNA
    Organism Scientific: THIOBACILLUS THIOPARUS
    Organism Taxid: 931
    Strain: THI115
 
Molecule 2 - THIOCYANATE HYDROLASE SUBUNIT BETA
    Chains: B, E, H, K
    EC Number: 3.5.5.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30A
    Expression System Strain: BL21AI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SCNB
    Organism Scientific: THIOBACILLUS THIOPARUS
    Organism Taxid: 931
    Strain: THI115
 
Molecule 3 - THIOCYANATE HYDROLASE SUBUNIT GAMMA
    Chains: C, F, I, L
    EC Number: 3.5.5.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30A
    Expression System Strain: BL21AI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SCNC
    Organism Scientific: THIOBACILLUS THIOPARUS
    Organism Taxid: 931
    Strain: THI115

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 20)

Asymmetric/Biological Unit (5, 20)
No.NameCountTypeFull Name
13CO4Ligand/IonCOBALT (III) ION
2BGC1Ligand/IonBETA-D-GLUCOSE
3CSD8Mod. Amino Acid3-SULFINOALANINE
4FRU3Ligand/IonFRUCTOSE
5TLA4Ligand/IonL(+)-TARTARIC ACID

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS B:10 , LEU B:13 , HOH B:825 , HOH B:1553 , HOH B:2421 , HOH D:215 , ARG F:157BINDING SITE FOR RESIDUE FRU B 6002
02AC2SOFTWARECYS C:128 , CSD C:131 , SER C:132 , CSD C:133 , HOH C:244BINDING SITE FOR RESIDUE 3CO C 301
03AC3SOFTWAREVAL A:68 , ARG C:177 , HOH C:625 , HOH C:628 , HOH C:762 , HOH C:904 , HOH C:1029 , HOH C:1122 , HOH C:1318BINDING SITE FOR RESIDUE TLA C 4001
04AC4SOFTWARECYS F:128 , CSD F:131 , SER F:132 , CSD F:133 , HOH F:244BINDING SITE FOR RESIDUE 3CO F 301
05AC5SOFTWAREVAL D:68 , ARG F:177 , HOH F:463 , HOH F:761 , HOH F:779 , HOH F:802 , HOH F:920 , HOH F:1042 , HOH F:1179BINDING SITE FOR RESIDUE TLA F 4002
06AC6SOFTWAREHOH B:2586 , GLU C:36 , ILE C:39 , ALA C:46 , HOH C:970 , HOH C:1669 , THR F:98 , HOH F:816 , HOH F:1217 , HOH F:1604 , HOH F:1740 , HOH F:3178BINDING SITE FOR RESIDUE BGC F 5001
07AC7SOFTWARECYS I:128 , CSD I:131 , SER I:132 , CSD I:133 , HOH I:244BINDING SITE FOR RESIDUE 3CO I 301
08AC8SOFTWAREVAL G:68 , ARG I:177 , HOH I:480 , HOH I:774 , HOH I:855 , HOH I:863 , HOH I:961 , HOH I:985 , HOH I:1044BINDING SITE FOR RESIDUE TLA I 4003
09AC9SOFTWARECYS L:128 , CSD L:131 , SER L:132 , CSD L:133 , HOH L:244BINDING SITE FOR RESIDUE 3CO L 301
10BC1SOFTWAREVAL J:68 , ARG L:177 , HOH L:482 , HOH L:520 , HOH L:565 , HOH L:675 , HOH L:737 , HOH L:922 , HOH L:1049 , HOH L:2156 , HOH L:2429 , HOH L:2763BINDING SITE FOR RESIDUE TLA L 4004
11BC2SOFTWAREHOH J:785 , GLU L:83 , ASP L:84 , HOH L:1383 , HOH L:1475BINDING SITE FOR RESIDUE FRU L 6001
12BC3SOFTWAREHIS H:10 , LEU H:13 , GLY H:14 , HOH H:3316 , ARG L:157 , HOH L:466 , HOH L:1549 , HOH L:1618 , HOH L:1791 , HOH L:2365 , HOH L:2670BINDING SITE FOR RESIDUE FRU L 6003

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZZD)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Asp A:24 -Pro A:25
2Asp D:24 -Pro D:25
3Asp G:24 -Pro G:25
4Asp J:24 -Pro J:25

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZZD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ZZD)

(-) Exons   (0, 0)

(no "Exon" information available for 2ZZD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:119
 aligned with SCNA_THITI | O66187 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:119
                                    17        27        37        47        57        67        77        87        97       107       117         
           SCNA_THITI     8 PVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEYSDTFANDTLETEIPERYLEKA 126
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhh....hhhhh............eeee...........hhhhh..eeeeeeeeeee.hhhhhh.......eeeeeeeeehhhhh...hhhhh..eeeeeee...eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 2zzd A   8 PVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEYSDTFANDTLETEIPERYLEKA 126
                                    17        27        37        47        57        67        77        87        97       107       117         


Chain B from PDB  Type:PROTEIN  Length:153
 aligned with SCNB_THITI | O66186 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:153
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152   
           SCNB_THITI     3 SSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPPK 155
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhh.................ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zzd B   3 SSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPPK 155
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152   


Chain C from PDB  Type:PROTEIN  Length:217
 aligned with SCNC_THITI | O66188 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:217
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       
           SCNC_THITI    23 EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLCSCYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV 239
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2zzdC00 C:23-239 Nitrile Hydratase; Chain A                                                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................eeeeee....eeeeee.......hhhhhh...hhhhhhhhhhhh..hhhhhhhhh........eeeeee....eeeeee..........hhhhhhhh.hhhhhhh...............ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zzd C  23 EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLcScYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV 239
                                    32        42        52        62        72        82        92       102       112       122       132|      142       152       162       172       182       192       202       212       222       232       
                                                                                                                                      131-CSD                                                                                                        
                                                                                                                                        133-CSD                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:120
 aligned with SCNA_THITI | O66187 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:120
                                    16        26        36        46        56        66        76        86        96       106       116       126
           SCNA_THITI     7 KPVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEYSDTFANDTLETEIPERYLEKA 126
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhh....hhhhh............eeee...........hhhhh..eeeeeeeeeee.hhhhhh.......eeeeeeeee.hhh....hhhhh..eeeeeee...eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 2zzd D   7 KPVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEYSDTFANDTLETEIPERYLEKA 126
                                    16        26        36        46        56        66        76        86        96       106       116       126


Chain E from PDB  Type:PROTEIN  Length:151
 aligned with SCNB_THITI | O66186 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:151
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153 
           SCNB_THITI     4 SIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPP 154
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhh................ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zzd E   4 SIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPP 154
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153 


Chain F from PDB  Type:PROTEIN  Length:218
 aligned with SCNC_THITI | O66188 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:218
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232        
           SCNC_THITI    23 EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLCSCYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPVH 240
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2zzdF00 F:23-240 Nitrile Hydratase; Chain A                                                                                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................eeeeee....eeeeee.......hhhhhh...hhhhhhhhhhhh..hhhhhhhhh........eeeeee....eeeeee..........hhhhhhhh.hhhhhhh...............ee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zzd F  23 EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLcScYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPVH 240
                                    32        42        52        62        72        82        92       102       112       122       132|      142       152       162       172       182       192       202       212       222       232        
                                                                                                                                      131-CSD                                                                                                         
                                                                                                                                        133-CSD                                                                                                       


Chain G from PDB  Type:PROTEIN  Length:120
 aligned with SCNA_THITI | O66187 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:120
                                    16        26        36        46        56        66        76        86        96       106       116       126
           SCNA_THITI     7 KPVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEYSDTFANDTLETEIPERYLEKA 126
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhh....hhhhh............eeee...........hhhhh..eeeeeeeeeee.hhhhhh.......eeeeeeeee.hhh....hhhhh..eeeeeee...eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 2zzd G   7 KPVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEYSDTFANDTLETEIPERYLEKA 126
                                    16        26        36        46        56        66        76        86        96       106       116       126


Chain H from PDB  Type:PROTEIN  Length:156
 aligned with SCNB_THITI | O66186 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:156
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151      
           SCNB_THITI     2 SSSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPPKAK 157
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhh.................ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2zzd H   2 SSSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPPKAK 157
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151      


Chain I from PDB  Type:PROTEIN  Length:217
 aligned with SCNC_THITI | O66188 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:217
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       
           SCNC_THITI    23 EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLCSCYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV 239
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2zzdI00 I:23-239 Nitrile Hydratase; Chain A                                                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................eeeeee....eeeeee.......hhhhhh...hhhhhhhhhhhh..hhhhhhhhh........eeeeee....eeeeee..........hhhhhhhh.hhhhhhh...............ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zzd I  23 EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLcScYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV 239
                                    32        42        52        62        72        82        92       102       112       122       132|      142       152       162       172       182       192       202       212       222       232       
                                                                                                                                      131-CSD                                                                                                        
                                                                                                                                        133-CSD                                                                                                      


Chain J from PDB  Type:PROTEIN  Length:120
 aligned with SCNA_THITI | O66187 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:120
                                    16        26        36        46        56        66        76        86        96       106       116       126
           SCNA_THITI     7 KPVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEYSDTFANDTLETEIPERYLEKA 126
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) NHase_beta-2zzdJ01 J:7-126                                                                                               Pfam domains (1)
           Pfam domains (2) NHase_beta-2zzdJ02 J:7-126                                                                                               Pfam domains (2)
           Pfam domains (3) NHase_beta-2zzdJ03 J:7-126                                                                                               Pfam domains (3)
           Pfam domains (4) NHase_beta-2zzdJ04 J:7-126                                                                                               Pfam domains (4)
         Sec.struct. author ......hhhhhhhh....hhhhh............eeee...........hhhhh..eeeeeeeeeee.hhhhhh.......eeeeeeeee.hhh....hhhhh..eeeeeee...eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 2zzd J   7 KPVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEYSDTFANDTLETEIPERYLEKA 126
                                    16        26        36        46        56        66        76        86        96       106       116       126


Chain K from PDB  Type:PROTEIN  Length:152
 aligned with SCNB_THITI | O66186 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:152
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152  
           SCNB_THITI     3 SSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPP 154
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------------------------NHase_beta-2zzdK01 K:44-148                                                                              ------ Pfam domains (1)
           Pfam domains (2) -----------------------------------------NHase_beta-2zzdK02 K:44-148                                                                              ------ Pfam domains (2)
           Pfam domains (3) -----------------------------------------NHase_beta-2zzdK03 K:44-148                                                                              ------ Pfam domains (3)
           Pfam domains (4) -----------------------------------------NHase_beta-2zzdK04 K:44-148                                                                              ------ Pfam domains (4)
         Sec.struct. author hhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhh.................ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zzd K   3 SSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPP 154
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152  


Chain L from PDB  Type:PROTEIN  Length:216
 aligned with SCNC_THITI | O66188 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:216
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233      
           SCNC_THITI    24 VSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLCSCYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV 239
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2zzdL00 L:24-239 Nitrile Hydratase; Chain A                                                                                                                                                                              CATH domains
           Pfam domains (1) NHase_alpha-2zzdL01 L:24-220                                                                                                                                                                         ------------------- Pfam domains (1)
           Pfam domains (2) NHase_alpha-2zzdL02 L:24-220                                                                                                                                                                         ------------------- Pfam domains (2)
           Pfam domains (3) NHase_alpha-2zzdL03 L:24-220                                                                                                                                                                         ------------------- Pfam domains (3)
           Pfam domains (4) NHase_alpha-2zzdL04 L:24-220                                                                                                                                                                         ------------------- Pfam domains (4)
         Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................eeeeee....eeeeee.......hhhhhh...hhhhhhhhhhhh..hhhhhhhhh........eeeeee....eeeeee..........hhhhhhhh.hhhhhhh...............ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2zzd L  24 VSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLcScYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV 239
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233      
                                                                                                                                     131-CSD                                                                                                        
                                                                                                                                       133-CSD
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ZZD)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: NHase_alpha] (12)
(-)
Clan: no clan defined [family: NHase_beta] (11)

(-) Gene Ontology  (8, 15)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,D,G,J   (SCNA_THITI | O66187)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0018822    nitrile hydratase activity    Catalysis of the reaction: an aliphatic amide = a nitrile + H2O.
    GO:0018760    thiocyanate hydrolase activity    Catalysis of the reaction: H(2)O + 2 H(+) + thiocyanate = carbonyl sulfide + NH(4)(+).
biological process
    GO:0046265    thiocyanate catabolic process    The chemical reactions and pathways resulting in the breakdown of thiocyanate, any anion of thiocyanic acid.

Chain B,E,H,K   (SCNB_THITI | O66186)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0018822    nitrile hydratase activity    Catalysis of the reaction: an aliphatic amide = a nitrile + H2O.
    GO:0018760    thiocyanate hydrolase activity    Catalysis of the reaction: H(2)O + 2 H(+) + thiocyanate = carbonyl sulfide + NH(4)(+).
biological process
    GO:0046265    thiocyanate catabolic process    The chemical reactions and pathways resulting in the breakdown of thiocyanate, any anion of thiocyanic acid.

Chain C,F,I,L   (SCNC_THITI | O66188)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0018760    thiocyanate hydrolase activity    Catalysis of the reaction: H(2)O + 2 H(+) + thiocyanate = carbonyl sulfide + NH(4)(+).
    GO:0046914    transition metal ion binding    Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver.
biological process
    GO:0006807    nitrogen compound metabolic process    The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
    GO:0046265    thiocyanate catabolic process    The chemical reactions and pathways resulting in the breakdown of thiocyanate, any anion of thiocyanic acid.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    3CO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    BGC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CSD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FRU  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    TLA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Asp A:24 - Pro A:25   [ RasMol ]  
    Asp D:24 - Pro D:25   [ RasMol ]  
    Asp G:24 - Pro G:25   [ RasMol ]  
    Asp J:24 - Pro J:25   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2zzd
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  SCNA_THITI | O66187
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  SCNB_THITI | O66186
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  SCNC_THITI | O66188
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.5.5.8
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  SCNA_THITI | O66187
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  SCNB_THITI | O66186
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  SCNC_THITI | O66188
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SCNA_THITI | O66187: 2dd4 2dd5 2dxb 2dxc 3vyg
        SCNB_THITI | O66186: 2dd4 2dd5 2dxb 2dxc 3vyg
        SCNC_THITI | O66188: 2dd4 2dd5 2dxb 2dxc 3vyg

(-) Related Entries Specified in the PDB File

2dd4 RECOMBINANT APO-ENZYME OF THIOCYANATE HYDROLASE
2dd5 NATIVE HOLO-ENZYME OF THIOCYANATE HYDROLASE
2dxb RECOMBINANT PROTEIN COMPRISING PARTIALLY-MODIFIED COBALT CENTERS
2dxc RECOMBINANT HOLO-ENZYME OF THIOCYANATE HYDROLASE