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(-) Description

Title :  THIOCYANATE HYDROLASE (SCNASE) FROM THIOBACILLUS THIOPARUS NATIVE HOLO-ENZYME
 
Authors :  T. Arakawa, Y. Kawano, S. Kataoka, Y. Katayama, N. Kamiya, M. Yohda, M. Odaka
Date :  19 Jan 06  (Deposition) - 30 Jan 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Hydrolase, Cobalt, Metalloprotein, Sulfenic Acid, Sulfinic Acid, Nitrile Hydratase, Thiocyanate, Carbonyl Sulfide, Claw Setting, Protein, Enzyme, Complex, Model Complex, Non- Corrin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Arakawa, Y. Kawano, S. Kataoka, Y. Katayama, N. Kamiya, M. Yohda, M. Odaka
Structure Of Thiocyanate Hydrolase: A New Nitrile Hydratase Family Protein With A Novel Five-Coordinate Cobalt(Iii) Center.
J. Mol. Biol. V. 366 1497 2007
PubMed-ID: 17222425  |  Reference-DOI: 10.1016/J.JMB.2006.12.011
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - THIOCYANATE HYDROLASE ALPHA SUBUNIT
    Chains: A, D, G, J
    EC Number: 3.5.5.8
    Organism Scientific: THIOBACILLUS THIOPARUS
    Organism Taxid: 931
    Strain: THI 115
    Synonym: SCNASE ALPHA SUBUNIT
 
Molecule 2 - THIOCYANATE HYDROLASE BETA SUBUNIT
    Chains: B, E, H, K
    EC Number: 3.5.5.8
    Organism Scientific: THIOBACILLUS THIOPARUS
    Organism Taxid: 931
    Strain: THI 115
    Synonym: SCNASE BETA SUBUNIT
 
Molecule 3 - THIOCYANATE HYDROLASE GAMMA SUBUNIT
    Chains: C, F, I, L
    EC Number: 3.5.5.8
    Organism Scientific: THIOBACILLUS THIOPARUS
    Organism Taxid: 931
    Strain: THI 115
    Synonym: SCNASE GAMMA SUBUNIT CONTAINING COBALT CENTERS

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 24)

Asymmetric/Biological Unit (4, 24)
No.NameCountTypeFull Name
13CO4Ligand/IonCOBALT (III) ION
2CSD4Mod. Amino Acid3-SULFINOALANINE
3CSO4Mod. Amino AcidS-HYDROXYCYSTEINE
4SO412Ligand/IonSULFATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG B:90 , ARG B:91 , TRP B:112 , SER C:108 , CSD C:131 , SER C:132 , CSO C:133 , ARG C:136 , HOH C:3002 , HOH C:3015BINDING SITE FOR RESIDUE SO4 C 3001
02AC2SOFTWAREARG E:90 , ARG E:91 , TRP E:112 , SER F:108 , SER F:132 , CSO F:133 , ARG F:136 , HOH F:3006 , HOH F:3016BINDING SITE FOR RESIDUE SO4 F 3002
03AC3SOFTWAREARG H:90 , ARG H:91 , TRP H:112 , SER I:108 , SER I:132 , CSO I:133 , ARG I:136 , HOH I:3013 , HOH I:3043BINDING SITE FOR RESIDUE SO4 I 3003
04AC4SOFTWAREARG K:90 , ARG K:91 , TRP K:112 , SER L:108 , SER L:132 , CSO L:133 , ARG L:136 , HOH L:3016 , HOH L:3057BINDING SITE FOR RESIDUE SO4 L 3004
05AC5SOFTWAREPRO A:49 , ASP A:50 , HOH A:3023 , HOH A:3041 , HOH A:3078 , HOH A:3098 , HOH A:3107 , ARG B:41 , HOH B:227 , ARG K:139BINDING SITE FOR RESIDUE SO4 A 3005
06AC6SOFTWAREPRO D:49 , ASP D:50 , HOH D:488 , HOH D:745 , HOH D:854 , HOH D:1029 , HOH D:1127 , HOH D:1881 , ARG E:41 , HOH E:184 , ARG H:139BINDING SITE FOR RESIDUE SO4 D 3006
07AC7SOFTWAREARG E:139 , PRO G:49 , ASP G:50 , HOH G:3040 , HOH G:3053 , HOH G:3059 , HOH G:3068 , HOH G:3078 , ARG H:41 , HOH H:200BINDING SITE FOR RESIDUE SO4 G 3007
08AC8SOFTWAREARG B:139 , PRO J:49 , ASP J:50 , HOH J:3057 , HOH J:3071 , HOH J:3085 , ARG K:41 , HOH K:219BINDING SITE FOR RESIDUE SO4 J 3008
09AC9SOFTWARELYS A:17 , LEU L:73 , ARG L:193 , ASP L:198 , GLY L:199 , HOH L:3173 , HOH L:3283BINDING SITE FOR RESIDUE SO4 L 3009
10BC1SOFTWAREGLU K:65 , HOH K:227 , HIS L:57 , GLN L:141 , HOH L:3143 , HOH L:3169BINDING SITE FOR RESIDUE SO4 L 3010
11BC2SOFTWAREGLU H:65 , HOH H:255 , HIS I:57 , GLN I:141 , HOH I:3119 , HOH I:3144BINDING SITE FOR RESIDUE SO4 I 3011
12BC3SOFTWAREPRO I:171 , HOH I:3107 , HOH I:3132 , HOH I:3146 , PRO L:171BINDING SITE FOR RESIDUE SO4 I 3012

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2DD5)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Asp A:24 -Pro A:25
2Asp D:24 -Pro D:25
3Asp G:24 -Pro G:25
4Asp J:24 -Pro J:25

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2DD5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2DD5)

(-) Exons   (0, 0)

(no "Exon" information available for 2DD5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:119
 aligned with SCNA_THITI | O66187 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:119
                                    17        27        37        47        57        67        77        87        97       107       117         
           SCNA_THITI     8 PVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEYSDTFANDTLETEIPERYLEKA 126
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhh....hhhhh............eeee...........hhhhh..eeeeeeeeeee.hhhhhh.......eeeeeeeeehhhhh...hhhhh..eeeeeee...eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 2dd5 A   8 PVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEYSDTFANDTLETEIPERYLEKA 126
                                    17        27        37        47        57        67        77        87        97       107       117         


Chain B from PDB  Type:PROTEIN  Length:152
 aligned with SCNB_THITI | O66186 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:152
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152  
           SCNB_THITI     3 SSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPP 154
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhh.................ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh...hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dd5 B   3 SSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPP 154
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152  


Chain C from PDB  Type:PROTEIN  Length:217
 aligned with SCNC_THITI | O66188 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:217
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       
           SCNC_THITI    23 EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLCSCYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV 239
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2dd5C00 C:23-239 Nitrile Hydratase; Chain A                                                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................eeeeee....eeeeee.......hhhhhh...hhhhhhhhhhhh..hhhhhhhhh........eeeeee....eeeeee..........hhhhhhhh.hhhhhhh...............ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dd5 C  23 EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLcScYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV 239
                                    32        42        52        62        72        82        92       102       112       122       132|      142       152       162       172       182       192       202       212       222       232       
                                                                                                                                      131-CSD                                                                                                        
                                                                                                                                        133-CSO                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:119
 aligned with SCNA_THITI | O66187 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:119
                                    17        27        37        47        57        67        77        87        97       107       117         
           SCNA_THITI     8 PVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEYSDTFANDTLETEIPERYLEKA 126
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhh....hhhhh............eeee...........hhhhh..eeeeeeeeeee.hhhhhh.......eeeeeeeeehhhhh...hhhhh..eeeeeee...eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 2dd5 D   8 PVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEYSDTFANDTLETEIPERYLEKA 126
                                    17        27        37        47        57        67        77        87        97       107       117         


Chain E from PDB  Type:PROTEIN  Length:151
 aligned with SCNB_THITI | O66186 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:151
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153 
           SCNB_THITI     4 SIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPP 154
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhh.................ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh...hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dd5 E   4 SIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPP 154
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153 


Chain F from PDB  Type:PROTEIN  Length:216
 aligned with SCNC_THITI | O66188 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:216
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233      
           SCNC_THITI    24 VSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLCSCYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV 239
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2dd5F00 F:24-239 Nitrile Hydratase; Chain A                                                                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....................eeeee....eeeeee.......hhhhhh..hhhhhhhhhhhhh..hhhhhhhhh........eeeeee.....eeeee..........hhhhhhhh.hhhhhhh...............ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2dd5 F  24 VSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLcScYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV 239
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233      
                                                                                                                                     131-CSD                                                                                                        
                                                                                                                                       133-CSO                                                                                                      


Chain G from PDB  Type:PROTEIN  Length:120
 aligned with SCNA_THITI | O66187 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:120
                                    16        26        36        46        56        66        76        86        96       106       116       126
           SCNA_THITI     7 KPVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEYSDTFANDTLETEIPERYLEKA 126
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhh....hhhhh............eeee...........hhhhh..eeeeeeeeeee.hhhhhh.......eeeeeeeeehhhhh...hhhhh..eeeeeee...eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 2dd5 G   7 KPVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEYSDTFANDTLETEIPERYLEKA 126
                                    16        26        36        46        56        66        76        86        96       106       116       126


Chain H from PDB  Type:PROTEIN  Length:156
 aligned with SCNB_THITI | O66186 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:156
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151      
           SCNB_THITI     2 SSSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPPKAK 157
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhh.................ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2dd5 H   2 SSSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPPKAK 157
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151      


Chain I from PDB  Type:PROTEIN  Length:217
 aligned with SCNC_THITI | O66188 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:217
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       
           SCNC_THITI    23 EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLCSCYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV 239
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2dd5I00 I:23-239 Nitrile Hydratase; Chain A                                                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................eeeeee....eeeeee.......hhhhhh...hhhhhhhhhhhh..hhhhhhhhh........eeeeee....eeeeee..........hhhhhhhh.hhhhhhh...............ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dd5 I  23 EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLcScYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV 239
                                    32        42        52        62        72        82        92       102       112       122       132|      142       152       162       172       182       192       202       212       222       232       
                                                                                                                                      131-CSD                                                                                                        
                                                                                                                                        133-CSO                                                                                                      


Chain J from PDB  Type:PROTEIN  Length:120
 aligned with SCNA_THITI | O66187 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:120
                                    16        26        36        46        56        66        76        86        96       106       116       126
           SCNA_THITI     7 KPVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEYSDTFANDTLETEIPERYLEKA 126
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhh....hhhhh............eeee...........hhhhh..eeeeeeeeeee.hhhhhh.......eeeeeeeeehhhhh...hhhhh..eeeeeee...eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 2dd5 J   7 KPVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAEDEAFGNEENVEWFYSIVFAQKDLWPEYSDTFANDTLETEIPERYLEKA 126
                                    16        26        36        46        56        66        76        86        96       106       116       126


Chain K from PDB  Type:PROTEIN  Length:152
 aligned with SCNB_THITI | O66186 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:152
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152  
           SCNB_THITI     3 SSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPP 154
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhh.................ee..hhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dd5 K   3 SSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPP 154
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152  


Chain L from PDB  Type:PROTEIN  Length:216
 aligned with SCNC_THITI | O66188 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:216
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233      
           SCNC_THITI    24 VSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLCSCYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV 239
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2dd5L00 L:24-239 Nitrile Hydratase; Chain A                                                                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................eeeeee....eeeeee.......hhhhhh...hhhhhhhhhhhh..hhhhhhhhh........eeeeee....eeeeee..........hhhhhhhh.hhhhhhh...............ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2dd5 L  24 VSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLcScYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV 239
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233      
                                                                                                                                     131-CSD                                                                                                        
                                                                                                                                       133-CSO
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2DD5)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2DD5)

(-) Gene Ontology  (8, 15)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,D,G,J   (SCNA_THITI | O66187)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0018822    nitrile hydratase activity    Catalysis of the reaction: an aliphatic amide = a nitrile + H2O.
    GO:0018760    thiocyanate hydrolase activity    Catalysis of the reaction: H(2)O + 2 H(+) + thiocyanate = carbonyl sulfide + NH(4)(+).
biological process
    GO:0046265    thiocyanate catabolic process    The chemical reactions and pathways resulting in the breakdown of thiocyanate, any anion of thiocyanic acid.

Chain B,E,H,K   (SCNB_THITI | O66186)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0018822    nitrile hydratase activity    Catalysis of the reaction: an aliphatic amide = a nitrile + H2O.
    GO:0018760    thiocyanate hydrolase activity    Catalysis of the reaction: H(2)O + 2 H(+) + thiocyanate = carbonyl sulfide + NH(4)(+).
biological process
    GO:0046265    thiocyanate catabolic process    The chemical reactions and pathways resulting in the breakdown of thiocyanate, any anion of thiocyanic acid.

Chain C,F,I,L   (SCNC_THITI | O66188)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0018760    thiocyanate hydrolase activity    Catalysis of the reaction: H(2)O + 2 H(+) + thiocyanate = carbonyl sulfide + NH(4)(+).
    GO:0046914    transition metal ion binding    Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver.
biological process
    GO:0006807    nitrogen compound metabolic process    The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
    GO:0046265    thiocyanate catabolic process    The chemical reactions and pathways resulting in the breakdown of thiocyanate, any anion of thiocyanic acid.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SCNA_THITI | O66187: 2dd4 2dxb 2dxc 2zzd 3vyg
        SCNB_THITI | O66186: 2dd4 2dxb 2dxc 2zzd 3vyg
        SCNC_THITI | O66188: 2dd4 2dxb 2dxc 2zzd 3vyg

(-) Related Entries Specified in the PDB File

2dd4 APOENZYME OF THE SAME PROTEIN (DIFFERENT CRYSTAL FORM)