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(-) Description

Title :  A. FULGIDUS LIPASE WITH FATTY ACID FRAGMENT AND CHLORIDE
 
Authors :  C. K. Chen, T. P. Ko, R. T. Guo, A. H. Wang
Date :  29 Jan 09  (Deposition) - 16 Jun 09  (Release) - 05 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Lipase, Archaeoglobus Fulgidus, Fatty Acid, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. K. Chen, G. C. Lee, T. P. Ko, R. T. Guo, L. M. Huang, H. J. Liu, Y. F. Ho, J. F. Shaw, A. H. Wang
Structure Of The Alkalohyperthermophilic Archaeoglobus Fulgidus Lipase Contains A Unique C-Terminal Domain Essential For Long-Chain Substrate Binding.
J. Mol. Biol. V. 390 672 2009
PubMed-ID: 19447113  |  Reference-DOI: 10.1016/J.JMB.2009.05.017

(-) Compounds

Molecule 1 - LIPASE, PUTATIVE
    Chains: A
    EC Number: 3.1.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-23A(+)
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AF_1763
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2PG41Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:31 , ALA A:32 , VAL A:211 , PHE A:254 , LEU A:358 , ASN A:399 , GLY A:400BINDING SITE FOR RESIDUE PG4 A 500
2AC2SOFTWAREVAL A:419 , ARG A:420BINDING SITE FOR RESIDUE CL A 800

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZYS)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro A:334 -Pro A:335

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZYS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ZYS)

(-) Exons   (0, 0)

(no "Exon" information available for 2ZYS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:460
 aligned with O28511_ARCFU | O28511 from UniProtKB/TrEMBL  Length:474

    Alignment length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                474     
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469    |    -
         O28511_ARCFU    20 EDFRPVVFVHGLAGSAGQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEFGLNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWGVDAPEGIPTLAVFGNPKALPALGLPEEKVVYNATNVYFNNMTHVQLCTSPETFAVMFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSGWLSIYPIDENGKRLTRLPVKFMRVKGDFEVRLRKGQLYEFQFRKDFSPIIYHYYRAPFVRDDLWARFLVSKPPLDVELLILPERLSPAAKETSGLLLIRYKEMIGEYDEEIGGVDEVYVNGVNVCTERICPIERAVNGLWVFDRGADGKSDLDREVVRYSIMPFMSAADLVVPAEGTISIAVKSRTGGEESFTIPAWSADRHSIIVQFSDYI-----   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -----Abhydrolase_6-2zysA01 A:25-237                                                                                                                                                                                       -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.....hhhhhhhhhhhhhh...hhh.eeee..hhhhhhhhh..........hhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhh.hhhhhhheeeeeee.............eeeeee.hhhhhhhh..........eeeee.....hhhhhhhhhhhhhhhhhhh..............eeeeeeeeee.......eeeeeeee.............eeeeee.eeeeeee....eeeeeee.....eeeeee..........eeee.....hhhhhhhhhhhhhhhhhh..eeee.................eeee..ee..............eeeee.............hhhhh......eee.......eeeeeee.....eeeeeee......eeeeee.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zys A  20 EDFRPVVFVHGLAGSAGQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEFGLNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWGVDAPEGIPTLAVFGNPKALPALGLPEEKVVYNATNVYFNNMTHVQLCTSPETFAVMFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSGWLSIYPIDENGKRLTRLPVKFMRVKGDFEVRLRKGQLYEFQFRKDFSPIIYHYYRAPFVRDDLWARFLVSKPPLDVELLILPERLSPAAKETSGLLLIRYKEMIGEYDEEIGGVDEVYVNGVNVCTERICPIERAVNGLWVFDRGADGKSDLDREVVRYSIMPFMSAADLVVPAEGTISIAVKSRTGGEESFTIPAWSADRHSIIVQFSDYIVDKLA 479
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ZYS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ZYS)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: AB_hydrolase (347)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (O28511_ARCFU | O28511)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O28511_ARCFU | O28511: 2zyh 2zyi 2zyr

(-) Related Entries Specified in the PDB File

2zyh 2zyi 2zyr