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(-) Description

Title :  MUTANT A. FULGIDUS LIPASE S136A COMPLEXED WITH FATTY ACID FRAGMENT
 
Authors :  C. K. Chen, T. P. Ko, R. T. Guo, A. H. Wang
Date :  22 Jan 09  (Deposition) - 16 Jun 09  (Release) - 29 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.83
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Lipase, Archaeoglobus Fulgidus, Fatty Acid, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. K. Chen, G. C. Lee, T. P. Ko, R. T. Guo, L. M. Huang, H. J. Liu, Y. F. Ho, J. F. Shaw, A. H. Wang
Structure Of The Alkalohyperthermophilic Archaeoglobus Fulgidus Lipase Contains A Unique C-Terminal Domain Essential For Long-Chain Substrate Binding.
J. Mol. Biol. V. 390 672 2009
PubMed-ID: 19447113  |  Reference-DOI: 10.1016/J.JMB.2009.05.017

(-) Compounds

Molecule 1 - LIPASE, PUTATIVE
    Chains: A, B
    EC Number: 3.1.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-23A(+)
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AF_1763
    Mutation: YES
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2R162Ligand/IonHEXADECANE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2R161Ligand/IonHEXADECANE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2R161Ligand/IonHEXADECANE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:330 , GLU A:339 , LEU A:358 , ASN A:399 , HOH A:511BINDING SITE FOR RESIDUE R16 A 500
2AC2SOFTWAREASP A:405 , ARG A:406 , ASP A:409 , LYS A:411 , ASP A:431 , HOH A:476BINDING SITE FOR RESIDUE CA A 700
3AC3SOFTWAREGLN B:37 , VAL B:211 , LEU B:330 , LEU B:358 , HOH B:906BINDING SITE FOR RESIDUE R16 B 500
4AC4SOFTWAREASP B:405 , ARG B:406 , ASP B:409 , LYS B:411 , ASP B:431 , HOH B:907BINDING SITE FOR RESIDUE CA B 700

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZYH)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Pro A:334 -Pro A:335
2Pro B:334 -Pro B:335

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZYH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ZYH)

(-) Exons   (0, 0)

(no "Exon" information available for 2ZYH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:456
 aligned with O28511_ARCFU | O28511 from UniProtKB/TrEMBL  Length:474

    Alignment length:456
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                474 
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469    | 
         O28511_ARCFU    20 EDFRPVVFVHGLAGSAGQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEFGLNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWGVDAPEGIPTLAVFGNPKALPALGLPEEKVVYNATNVYFNNMTHVQLCTSPETFAVMFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSGWLSIYPIDENGKRLTRLPVKFMRVKGDFEVRLRKGQLYEFQFRKDFSPIIYHYYRAPFVRDDLWARFLVSKPPLDVELLILPERLSPAAKETSGLLLIRYKEMIGEYDEEIGGVDEVYVNGVNVCTERICPIERAVNGLWVFDRGADGKSDLDREVVRYSIMPFMSAADLVVPAEGTISIAVKSRTGGEESFTIPAWSADRHSIIVQFSDYI-   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeee.....hhhhhhhhhhhhhhh..hhh.eeee..hhhhhhhhhhhhhhh......hhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhhh.eeeeeee.............eeeeee.hhhh..............eeeee...hhhhhhhhhhhhhhhhhhhhh..............eeeeeeeeee.......eeeeeeee.............eeeeee.eeeeeee....eeeeeee.....eeeee.......eeeeeeee.....hhhhhhhhhhhhhhhhh...eeee.................eeee..ee.......hhhhh..eeeeehhhhh........hhhhh....eeeee.......eeeeeee.....eeeeeee......eeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2zyh A  20 EDFRPVVFVHGLAGSAGQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEFGLNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHAMGTFFLVRYVNSSPERAAKVAHLILLDGVWGVDAPEGIPTLAVFGNPKALPALGLPEEKVVYNATNVYFNNMTHVQLCTSPETFAVMFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSGWLSIYPIDENGKRLTRLPVKFMRVKGDFEVRLRKGQLYEFQFRKDFSPIIYHYYRAPFVRDDLWARFLVSKPPLDVELLILPERLSPAAKETSGLLLIRYKEMIGEYDEEIGGVDEVYVNGVNVCTERICPIERAVNGLWVFDRGADGKSDLDREVVRYSIMPFMSAADLVVPAEGTISIAVKSRTGGEESFTIPAWSADRHSIIVQFSDYIV 475
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469      


Chain B from PDB  Type:PROTEIN  Length:456
 aligned with O28511_ARCFU | O28511 from UniProtKB/TrEMBL  Length:474

    Alignment length:456
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                474 
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469    | 
         O28511_ARCFU    20 EDFRPVVFVHGLAGSAGQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEFGLNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWGVDAPEGIPTLAVFGNPKALPALGLPEEKVVYNATNVYFNNMTHVQLCTSPETFAVMFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSGWLSIYPIDENGKRLTRLPVKFMRVKGDFEVRLRKGQLYEFQFRKDFSPIIYHYYRAPFVRDDLWARFLVSKPPLDVELLILPERLSPAAKETSGLLLIRYKEMIGEYDEEIGGVDEVYVNGVNVCTERICPIERAVNGLWVFDRGADGKSDLDREVVRYSIMPFMSAADLVVPAEGTISIAVKSRTGGEESFTIPAWSADRHSIIVQFSDYI-   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -----Abhydrolase_6-2zyhB01 B:25-237                                                                                                                                                                                       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -----Abhydrolase_6-2zyhB02 B:25-237                                                                                                                                                                                       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author .....eeee.....hhhhhhhhhhhhhhh..hhh.eeee..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhhh.eeeeeee.............eeeee....................eeee....hhhhhhhhhhhhhhhhhhhhh..............eeeeeeeeee.......eeeeeeee.............eeeeee.eeeeeee....eeeeeee.....eeeeee......eeeeeeee.....hhhhhhhhhhhhhhhhh...eeee.................eeee..ee.......hhhhh..eeeeehhhhh........hhhhh....eeeee.......eeeeeee.....eeeeeee......eeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2zyh B  20 EDFRPVVFVHGLAGSAGQFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEFGLNISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHAMGTFFLVRYVNSSPERAAKVAHLILLDGVWGVDAPEGIPTLAVFGNPKALPALGLPEEKVVYNATNVYFNNMTHVQLCTSPETFAVMFEFINGYKPATTDIVPQDGDYVKVKGKFLAFATNGDVSGWLSIYPIDENGKRLTRLPVKFMRVKGDFEVRLRKGQLYEFQFRKDFSPIIYHYYRAPFVRDDLWARFLVSKPPLDVELLILPERLSPAAKETSGLLLIRYKEMIGEYDEEIGGVDEVYVNGVNVCTERICPIERAVNGLWVFDRGADGKSDLDREVVRYSIMPFMSAADLVVPAEGTISIAVKSRTGGEESFTIPAWSADRHSIIVQFSDYIV 475
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ZYH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ZYH)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: AB_hydrolase (347)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (O28511_ARCFU | O28511)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  2zyh
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  3.1.1.3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O28511_ARCFU | O28511: 2zyi 2zyr 2zys

(-) Related Entries Specified in the PDB File

2zyi 2zyr 2zys