2ZNZ - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF FFRP

Authors :   M. Yamada, M. Suzuki

Date :   02 May 08 (Deposition) - 17 Mar 09 (Release) - 17 Mar 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.39

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D  (2x)
Biol. Unit 2: E,F,G,H  (2x)
Biol. Unit 3: A,B  (1x)
Biol. Unit 4: C,D  (1x)
Biol. Unit 5: E,F  (1x)
Biol. Unit 6: G,H  (1x)

Keywords :   Transcription, Dna-Binding, Transcription Regulation, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Yamada, S. A. Ishijima, M. Suzuki
Interactions Between The Archaeal Transcription Repressor Fl11 And Its Coregulators Lysine And Arginine.
Proteins V. 74 520 2009
PubMed-ID: 19004003 | Reference-DOI: 10.1002/PROT.22269
(for further references see the PDB file header)

Molecule 1 - UNCHARACTERIZED HTH-TYPE TRANSCRIPTIONAL REGULATOR PH1519
	Chains	:	A, B, C, D, E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	FL11, PH1519
	Organism Scientific	:	PYROCOCCUS HORIKOSHII
	Organism Taxid	:	53953
	Strain	:	OT3
	Synonym	:	FL11, ARCHAEAL TRANSCRICTION REPRESSOR

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (2x)	:	A	B	C	D
Biological Unit 2 (2x)	:					E	F	G	H
Biological Unit 3 (1x)	:	A	B
Biological Unit 4 (1x)	:			C	D
Biological Unit 5 (1x)	:					E	F
Biological Unit 6 (1x)	:							G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 8)

No.	Name	Count	Type	Full Name
1	LYS	8	Mod. Amino Acid	LYSINE

Biological Unit 1 (1, 8)

No.	Name	Count	Type	Full Name
1	LYS	8	Mod. Amino Acid	LYSINE

Biological Unit 2 (1, 8)

No.	Name	Count	Type	Full Name
1	LYS	8	Mod. Amino Acid	LYSINE

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	LYS	2	Mod. Amino Acid	LYSINE

Biological Unit 4 (1, 2)

No.	Name	Count	Type	Full Name
1	LYS	2	Mod. Amino Acid	LYSINE

Biological Unit 5 (1, 2)

No.	Name	Count	Type	Full Name
1	LYS	2	Mod. Amino Acid	LYSINE

Biological Unit 6 (1, 2)

No.	Name	Count	Type	Full Name
1	LYS	2	Mod. Amino Acid	LYSINE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:138 , ASP A:142 , THR A:153 , HIS A:154 , THR A:155	BINDING SITE FOR RESIDUE LYS A 172
2	AC2	SOFTWARE	ASN B:138 , ASP B:142 , THR B:153 , HIS B:154 , THR B:155	BINDING SITE FOR RESIDUE LYS B 172
3	AC3	SOFTWARE	ASN C:138 , ASP C:142 , THR C:153 , HIS C:154 , THR C:155	BINDING SITE FOR RESIDUE LYS C 172
4	AC4	SOFTWARE	ASN D:138 , LEU D:141 , ASP D:142 , THR D:153 , THR D:155	BINDING SITE FOR RESIDUE LYS D 172
5	AC5	SOFTWARE	ASN E:138 , LEU E:141 , ASP E:142 , THR E:153 , HIS E:154 , THR E:155	BINDING SITE FOR RESIDUE LYS E 172
6	AC6	SOFTWARE	ASN F:138 , LEU F:141 , ASP F:142 , THR F:153 , HIS F:154 , THR F:155	BINDING SITE FOR RESIDUE LYS F 172
7	AC7	SOFTWARE	ASN G:138 , ASP G:142 , THR G:153 , THR G:155	BINDING SITE FOR RESIDUE LYS G 172
8	AC8	SOFTWARE	ASN H:138 , ASP H:142 , THR H:153 , HIS H:154 , THR H:155	BINDING SITE FOR RESIDUE LYS H 172

(no "SS Bond" information available for 2ZNZ)

(no "Cis Peptide Bond" information available for 2ZNZ)

(no "SAP(SNP)/Variant" information available for 2ZNZ)

Asymmetric Unit (1, 7)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_ASNC_2	PS50956	AsnC-type HTH domain profile.	REG6_PYRHO	5-66	7	A:25-86 B:25-86 D:25-86 E:25-86 F:25-86 G:25-86 H:25-86

Biological Unit 1 (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_ASNC_2	PS50956	AsnC-type HTH domain profile.	REG6_PYRHO	5-66	6	A:25-86 B:25-86 D:25-86 - - - -

Biological Unit 2 (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_ASNC_2	PS50956	AsnC-type HTH domain profile.	REG6_PYRHO	5-66	8	- - - E:25-86 F:25-86 G:25-86 H:25-86

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_ASNC_2	PS50956	AsnC-type HTH domain profile.	REG6_PYRHO	5-66	2	A:25-86 B:25-86 - - - - -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_ASNC_2	PS50956	AsnC-type HTH domain profile.	REG6_PYRHO	5-66	1	- - D:25-86 - - - -

Biological Unit 5 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_ASNC_2	PS50956	AsnC-type HTH domain profile.	REG6_PYRHO	5-66	2	- - - E:25-86 F:25-86 - -

Biological Unit 6 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_ASNC_2	PS50956	AsnC-type HTH domain profile.	REG6_PYRHO	5-66	2	- - - - - G:25-86 H:25-86

(no "Exon" information available for 2ZNZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:147
 aligned with REG6_PYRHO | O59188 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:147
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       
           REG6_PYRHO     5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKTHKETTELPIK 151
               SCOP domains d2znza1 A:25-84 Putative transcriptional regulator PH1519   d2znza2 A:85-170 Putative transcriptional regulator PH1519                            - SCOP domains
               CATH domains 2znzA01 A:25-76                                     2znzA02 A:77-170  [code=3.30.70.920, no name defined]                                         - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee...hhhhhhhhhhh...eeeeeee.....eeeeeee.hhhhhhhhhhhhhhh..eeeeeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE HTH_ASNC_2  PDB: A:25-86 UniProt: 5-66                        ------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2znz A  25 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKTHKETTELPIK 172
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164     ||
                                                                                                                                                                           170|
                                                                                                                                                                            172

Chain B from PDB  Type:PROTEIN  Length:147
 aligned with REG6_PYRHO | O59188 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:147
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       
           REG6_PYRHO     5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKTHKETTELPIK 151
               SCOP domains d2znzb1 B:25-84 Putative transcriptional regulator PH1519   d2znzb2 B:85-170 Putative transcriptional regulator PH1519                            - SCOP domains
               CATH domains 2znzB01 B:25-76                                     2znzB02 B:77-170  [code=3.30.70.920, no name defined]                                         - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee...hhhhhhhhhh....eeeeeee.....eeeeeee.hhhhhhhhhhhhhhh..eeeeeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE HTH_ASNC_2  PDB: B:25-86 UniProt: 5-66                        ------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2znz B  25 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKTHKETTELPIK 172
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164     ||
                                                                                                                                                                           170|
                                                                                                                                                                            172

Chain C from PDB  Type:PROTEIN  Length:145
 aligned with REG6_PYRHO | O59188 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:145
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146     
           REG6_PYRHO     7 EIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKTHKETTELPIK 151
               SCOP domains d2znzc1 C:27-84 Putative transcriptional regulator PH1519 d2znzc2 C:85-170 Putative transcriptional regulator PH1519                            - SCOP domains
               CATH domains 2znzC01 C:27-76                                   2znzC02 C:77-170  [code=3.30.70.920, no name defined]                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhh.eeeeeeee........eeeeeeeee...hhhhhhhhhhh...eeeeeee.....eeeeeee.hhhhhhhhhhhhhhh..eeeeeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE HTH_ASNC_2  PDB: - UniProt: 5-66                            ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2znz C  27 EIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKTHKETTELPIK 172
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166   ||
                                                                                                                                                                         170|
                                                                                                                                                                          172

Chain D from PDB  Type:PROTEIN  Length:147
 aligned with REG6_PYRHO | O59188 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:147
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       
           REG6_PYRHO     5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKTHKETTELPIK 151
               SCOP domains d2znzd1 D:25-84 Putative transcriptional regulator PH1519   d2znzd2 D:85-170 Putative transcriptional regulator PH1519                            - SCOP domains
               CATH domains 2znzD01 D:25-76                                     2znzD02 D:77-170  [code=3.30.70.920, no name defined]                                         - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee...hhhhhhhhhh....eeeeeee.....eeeeeee.hhhhhhhhhhhhhh...eeeeeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE HTH_ASNC_2  PDB: D:25-86 UniProt: 5-66                        ------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2znz D  25 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKTHKETTELPIK 172
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164     ||
                                                                                                                                                                           170|
                                                                                                                                                                            172

Chain E from PDB  Type:PROTEIN  Length:147
 aligned with REG6_PYRHO | O59188 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:147
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       
           REG6_PYRHO     5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKTHKETTELPIK 151
               SCOP domains d2znze1 E:25-84 Putative transcriptional regulator PH1519   d2znze2 E:85-170 Putative transcriptional regulator PH1519                            - SCOP domains
               CATH domains 2znzE01 E:25-76                                     2znzE02 E:77-170  [code=3.30.70.920, no name defined]                                         - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee...hhhhhhhhhhh...eeeeeee.....eeeeeee.hhhhhhhhhhhhhhh..eeeeeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE HTH_ASNC_2  PDB: E:25-86 UniProt: 5-66                        ------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2znz E  25 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKTHKETTELPIK 172
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164     ||
                                                                                                                                                                           170|
                                                                                                                                                                            172

Chain F from PDB  Type:PROTEIN  Length:147
 aligned with REG6_PYRHO | O59188 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:147
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       
           REG6_PYRHO     5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKTHKETTELPIK 151
               SCOP domains d2znzf1 F:25-84 Putative transcriptional regulator PH1519   d2znzf2 F:85-170 Putative transcriptional regulator PH1519                            - SCOP domains
               CATH domains 2znzF01 F:25-76                                     2znzF02 F:77-170  [code=3.30.70.920, no name defined]                                         - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee...hhhhhhhhhh....eeeeeee.....eeeeeee.hhhhhhhhhhhhhh...eeeeeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE HTH_ASNC_2  PDB: F:25-86 UniProt: 5-66                        ------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2znz F  25 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKTHKETTELPIK 172
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164     ||
                                                                                                                                                                           170|
                                                                                                                                                                            172

Chain G from PDB  Type:PROTEIN  Length:147
 aligned with REG6_PYRHO | O59188 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:147
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       
           REG6_PYRHO     5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKTHKETTELPIK 151
               SCOP domains d2znzg1 G:25-84 Putative transcriptional regulator PH1519   d2znzg2 G:85-170 Putative transcriptional regulator PH1519                            - SCOP domains
               CATH domains 2znzG01 G:25-76                                     2znzG02 G:77-170  [code=3.30.70.920, no name defined]                                         - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee...hhhhhhhhhhh...eeeeeee.....eeeeeee.hhhhhhhhhhhhhhh..eeeeeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE HTH_ASNC_2  PDB: G:25-86 UniProt: 5-66                        ------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2znz G  25 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKTHKETTELPIK 172
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164     ||
                                                                                                                                                                           170|
                                                                                                                                                                            172

Chain H from PDB  Type:PROTEIN  Length:147
 aligned with REG6_PYRHO | O59188 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:147
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       
           REG6_PYRHO     5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKTHKETTELPIK 151
               SCOP domains d2znzh1 H:25-84 Putative transcriptional regulator PH1519   d2znzh2 H:85-170 Putative transcriptional regulator PH1519                            - SCOP domains
               CATH domains 2znzH01 H:25-76                                     2znzH02 H:77-170  [code=3.30.70.920, no name defined]                                         - CATH domains
           Pfam domains (1) HTH_AsnC-type-2znzH09 H:25-66             ------------------------AsnC_trans_reg-2znzH01 H:91-161                                        ---------- Pfam domains (1)
           Pfam domains (2) HTH_AsnC-type-2znzH10 H:25-66             ------------------------AsnC_trans_reg-2znzH02 H:91-161                                        ---------- Pfam domains (2)
           Pfam domains (3) HTH_AsnC-type-2znzH11 H:25-66             ------------------------AsnC_trans_reg-2znzH03 H:91-161                                        ---------- Pfam domains (3)
           Pfam domains (4) HTH_AsnC-type-2znzH12 H:25-66             ------------------------AsnC_trans_reg-2znzH04 H:91-161                                        ---------- Pfam domains (4)
           Pfam domains (5) HTH_AsnC-type-2znzH13 H:25-66             ------------------------AsnC_trans_reg-2znzH05 H:91-161                                        ---------- Pfam domains (5)
           Pfam domains (6) HTH_AsnC-type-2znzH14 H:25-66             ------------------------AsnC_trans_reg-2znzH06 H:91-161                                        ---------- Pfam domains (6)
           Pfam domains (7) HTH_AsnC-type-2znzH15 H:25-66             ------------------------AsnC_trans_reg-2znzH07 H:91-161                                        ---------- Pfam domains (7)
           Pfam domains (8) HTH_AsnC-type-2znzH16 H:25-66             ------------------------AsnC_trans_reg-2znzH08 H:91-161                                        ---------- Pfam domains (8)
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee...hhhhhhhhhh....eeeeeee.....eeeeeee.hhhhhhhhhhhhhh...eeeeeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE HTH_ASNC_2  PDB: H:25-86 UniProt: 5-66                        ------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2znz H  25 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIGSIPGVEGTHTMIVLKTHKETTELPIK 172
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164     ||
                                                                                                                                                                           170|
                                                                                                                                                                            172

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: DNA/RNA-binding 3-helical bundle (1299)

Superfamily: Winged helix DNA-binding domain (576)

Family: Lrp/AsnC-like transcriptional regulator N-terminal domain (7)

Protein domain: Putative transcriptional regulator PH1519 (4)

Pyrococcus horikoshii [TaxId: 53953] (4)

1a	d2znza1	A:25-84
1b	d2znzb1	B:25-84
1c	d2znzc1	C:27-84
1d	d2znzd1	D:25-84
1e	d2znze1	E:25-84
1f	d2znzf1	F:25-84
1g	d2znzg1	G:25-84
1h	d2znzh1	H:25-84

Class: Alpha and beta proteins (a+b) (23004)

Fold: Ferredoxin-like (1795)

Superfamily: Dimeric alpha+beta barrel (122)

Family: Lrp/AsnC-like transcriptional regulator C-terminal domain (8)

Protein domain: Putative transcriptional regulator PH1519 (4)

Pyrococcus horikoshii [TaxId: 53953] (4)

2a	d2znza2	A:85-170
2b	d2znzb2	B:85-170
2c	d2znzc2	C:85-170
2d	d2znzd2	D:85-170
2e	d2znze2	E:85-170
2f	d2znzf2	F:85-170
2g	d2znzg2	G:85-170
2h	d2znzh2	H:85-170

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Alpha-Beta Plaits (1688)

Homologous Superfamily: [code=3.30.70.920, no name defined] (27)

Pyrococcus horikoshii. Organism_taxid: 53953. Strain: ot3. (2)

1a	2znzA02	A:77-170
1b	2znzB02	B:77-170
1c	2znzC02	C:77-170
1d	2znzD02	D:77-170
1e	2znzE02	E:77-170
1f	2znzF02	F:77-170
1g	2znzG02	G:77-170
1h	2znzH02	H:77-170

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Arc Repressor Mutant, subunit A (1030)

Homologous Superfamily: 'winged helix' repressor DNA binding domain (507)

Pyrococcus horikoshii. Organism_taxid: 53953. Strain: ot3. (2)

2a	2znzA01	A:25-76
2b	2znzB01	B:25-76
2c	2znzD01	D:25-76
2d	2znzE01	E:25-76
2e	2znzF01	F:25-76
2f	2znzG01	G:25-76
2g	2znzH01	H:25-76
2h	2znzC01	C:27-76

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (REG6_PYRHO | O59188)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0043565	sequence-specific DNA binding	Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Asymmetric Unit
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	2znz
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	REG6_PYRHO \| O59188
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	REG6_PYRHO \| O59188
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UniProtKB/Swiss-Prot
	REG6_PYRHO \| O59188	:	1ri7 2cyy 2e1c 2zny

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 7)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (2, 16)

CATH Domains (2, 16)

Pfam Domains (2, 16)

Gene Ontology (6, 6)

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