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(-) Description

Title :  CRYSTAL STRUCTURE OF GMP SYNTHETASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH XMP
 
Authors :  S. Baba, M. Kanagawa, S. Kuramitsu, S. Yokoyama, G. Sampei, G. Kawai, Ri Structural Genomics/Proteomics Initiative (Rsgi)
Date :  20 Apr 07  (Deposition) - 23 Oct 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A,B,C,D  (1x)
Keywords :  Gmp Synthetase, Xmp Binding, Atp Binding, Purine Nucleotide Biosynthetic Pathway, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Baba, M. Kanagawa, H. Yanai, T. Ishii, S. Kuramitsu, S. Yokoyama, G. Sampei, G. Kawai
Crystal Structure Of Gmp Synthetase From Thermus Thermophilus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GMP SYNTHASE [GLUTAMINE-HYDROLYZING]
    Chains: A, B, C, D
    EC Number: 6.3.5.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-11A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GUAA
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8
    Synonym: GLUTAMINE AMIDOTRANSFERASE, GMP SYNTHETASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD
Biological Unit 3 (1x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 24)

Asymmetric Unit (2, 24)
No.NameCountTypeFull Name
1MSE20Mod. Amino AcidSELENOMETHIONINE
2XMP4Ligand/IonXANTHOSINE-5'-MONOPHOSPHATE
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2XMP2Ligand/IonXANTHOSINE-5'-MONOPHOSPHATE
Biological Unit 2 (2, 12)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2XMP2Ligand/IonXANTHOSINE-5'-MONOPHOSPHATE
Biological Unit 3 (2, 24)
No.NameCountTypeFull Name
1MSE20Mod. Amino AcidSELENOMETHIONINE
2XMP4Ligand/IonXANTHOSINE-5'-MONOPHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:288 , PRO A:382 , GLY A:383 , PRO A:384 , GLN A:424 , LYS A:495 , THR A:499 , ILE A:500 , GLU A:501 , HOH A:773 , HOH A:784 , HOH A:807BINDING SITE FOR RESIDUE XMP A 701
2AC2SOFTWAREARG B:288 , PRO B:382 , GLY B:383 , PRO B:384 , GLN B:424 , PHE B:458 , LYS B:495 , THR B:499 , ILE B:500 , GLU B:501 , HOH B:748BINDING SITE FOR RESIDUE XMP B 702
3AC3SOFTWAREARG C:288 , PRO C:382 , GLY C:383 , PRO C:384 , GLN C:424 , PHE C:458 , LYS C:495 , THR C:499 , ILE C:500 , GLU C:501BINDING SITE FOR RESIDUE XMP C 703
4AC4SOFTWAREARG D:288 , PRO D:382 , GLY D:383 , PRO D:384 , GLN D:424 , PHE D:458 , LYS D:495 , THR D:499 , ILE D:500 , GLU D:501BINDING SITE FOR RESIDUE XMP D 704

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YWC)

(-) Cis Peptide Bonds  (11, 11)

Asymmetric Unit
No.Residues
1Gly A:307 -Pro A:308
2Lys A:495 -Pro A:496
3Pro A:496 -Pro A:497
4Gly B:307 -Pro B:308
5Lys B:495 -Pro B:496
6Pro B:496 -Pro B:497
7Gly C:307 -Pro C:308
8Lys C:495 -Pro C:496
9Pro C:496 -Pro C:497
10Lys D:495 -Pro D:496
11Pro D:496 -Pro D:497

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YWC)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GMPS_ATP_PPASEPS51553 GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile.GUAA_THET8190-378
 
 
 		  4A:190-378
B:190-378
C:190-378
D:190-378
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GMPS_ATP_PPASEPS51553 GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile.GUAA_THET8190-378
 
 
 		  2A:190-378
B:190-378
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GMPS_ATP_PPASEPS51553 GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile.GUAA_THET8190-378
 
 
 		  2-
-
C:190-378
D:190-378
Biological Unit 3 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GMPS_ATP_PPASEPS51553 GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile.GUAA_THET8190-378
 
 
 		  4A:190-378
B:190-378
C:190-378
D:190-378

(-) Exons   (0, 0)

(no "Exon" information available for 2YWC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:475
 aligned with GUAA_THET8 | Q5SI28 from UniProtKB/Swiss-Prot  Length:503

    Alignment length:503
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500   
           GUAA_THET8     1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERAGRAEYGKALLTRHEGPLFRGLEGEVQVWMSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLELAGVKRDWTPEHVLEELLREVRERAGKDRVLLAVSGGVDSSTLALLLAKAGVDHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVIESAGGHGAAKIKSHHNVGGLPEDLEFELLEPFRLLFKDEVRELALLLGLPDTLRLRHPFPGPGLAVRVLGEVTEERLEILRRADDIFTSLLREWGLYEKVAQALAVLTPVRSVGVAGDERKYGYVLALRAVTTEDFMTADWARLPLEFLDEAARRITRRVPEIGRVVYDLTSKPPATIEWE 503
               SCOP domains d2ywca1 A:1-189 GMP synthetase                                                                                                                                                               d2ywca2 A:190-382 GMP synthetase, central domain                                                                                                                                                 d2ywca3 A:383-503 GMP synthetase C-terminal dimeri            sation domain                                               SCOP domains
               CATH domains -2ywcA01 A:2-188  [code=3.40.50.880, no name defined]                                                                                                                                       2ywcA02 A:189-378 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                                                                                       ----------------2ywcA03 A:395-502  [code=3.30.300.10,             no name defined]                                          - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhh....eeeee...hhhhhhh....eeee...............hhhhhhh...eeeehhhhhhhhhh...eee......eeeee..ee.hhhhh......eeeee...eeee.....eeeee.......eee.....eeee..........hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh.eeeeeeee......hhhhhhhhhhhhhh..eeeeehhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh...eee...hhhhhh.----------------.........eee......hhhhhhhhhhhh..hhhhhh......hhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeeeee..------------.eeeeeeeee.......ee...hhhhhhhhhhhhhhhh..eeeeeee............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GMPS_ATP_PPASE  PDB: A:190-378 UniProt: 190-378                                                                                                                                              ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ywc A   1 mVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGmQLLAQELGGRVERAGRAEYGKALLTRHEGPLFRGLEGEVQVWmSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGmQILENFLELAGVKRDWTPEHVLEELLREVRERAGKDRVLLAVSGGVDSSTLALLLAKAGVDHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVIE----------------GGLPEDLEFELLEPFRLLFKDEVRELALLLGLPDTLRLRHPFPGPGLAVRVLGEVTEERLEILRRADDIFTSLLREWGLYEKVAQALAVLTPV------------GYVLALRAVTTEDFmTADWARLPLEFLDEAARRITRRVPEIGRVVYDLTSKPPATIEWE 503
                            |       10        20        30        40        50        60        70        80|       90       100       110       120   |   130       140       150       160       170   |   180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  |      -       340       350       360       370       380       390       400       410       420       430 |       -    |  450       460       470       480       490       500   
                            |                                                                              81-MSE                                    124-MSE                                           174-MSE                                                                                                                                              323              340                                                                                         432          445           459-MSE                                        
                            1-MSE                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:467
 aligned with GUAA_THET8 | Q5SI28 from UniProtKB/Swiss-Prot  Length:503

    Alignment length:503
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500   
           GUAA_THET8     1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERAGRAEYGKALLTRHEGPLFRGLEGEVQVWMSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLELAGVKRDWTPEHVLEELLREVRERAGKDRVLLAVSGGVDSSTLALLLAKAGVDHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVIESAGGHGAAKIKSHHNVGGLPEDLEFELLEPFRLLFKDEVRELALLLGLPDTLRLRHPFPGPGLAVRVLGEVTEERLEILRRADDIFTSLLREWGLYEKVAQALAVLTPVRSVGVAGDERKYGYVLALRAVTTEDFMTADWARLPLEFLDEAARRITRRVPEIGRVVYDLTSKPPATIEWE 503
               SCOP domains d2ywcb1 B:1-189 GMP synthetase                                                                                                                                                               d2ywcb2 B:190-382 GMP synthetase, central domain                                                                                                                                                 d2ywcb3 B:383-503 GMP synthetase C-terminal dimeri            sation domain                                               SCOP domains
               CATH domains -2ywcB01 B:2-188  [code=3.40.50.880, no name defined]                                                                                                                                       2ywcB02 B:189-378 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                                                                                       ----------------2ywcB03 B:395-502  [code=3.30.300.10,             no name defined]                                          - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhh...eeeee...hhhhhhh....eeee...............hhhhhhh...eeeehhhhhhhhhh...eee......eeeeeeeee.hhhhh......eeeee...eeee.....eeeeee......eee.....eeee..........hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhhhh..eeeeehhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh....eee...hhhhhh------------------------..eee......hhhhhhhhhhhh..hhhhhh......hhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeeeee..------------.eeeeeeeee.......ee...hhhhhhhhhhhhhhhh..eeeeeee............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GMPS_ATP_PPASE  PDB: B:190-378 UniProt: 190-378                                                                                                                                              ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ywc B   1 mVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGmQLLAQELGGRVERAGRAEYGKALLTRHEGPLFRGLEGEVQVWmSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGmQILENFLELAGVKRDWTPEHVLEELLREVRERAGKDRVLLAVSGGVDSSTLALLLAKAGVDHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVI------------------------EFELLEPFRLLFKDEVRELALLLGLPDTLRLRHPFPGPGLAVRVLGEVTEERLEILRRADDIFTSLLREWGLYEKVAQALAVLTPV------------GYVLALRAVTTEDFmTADWARLPLEFLDEAARRITRRVPEIGRVVYDLTSKPPATIEWE 503
                            |       10        20        30        40        50        60        70        80|       90       100       110       120   |   130       140       150       160       170   |   180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 |       -         -      |350       360       370       380       390       400       410       420       430 |       -    |  450       460       470       480       490       500   
                            1-MSE                                                                          81-MSE                                    124-MSE                                           174-MSE                                                                                                                                             322                      347                                                                                  432          445           459-MSE                                        


Chain C from PDB  Type:PROTEIN  Length:467
 aligned with GUAA_THET8 | Q5SI28 from UniProtKB/Swiss-Prot  Length:503

    Alignment length:503
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500   
           GUAA_THET8     1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERAGRAEYGKALLTRHEGPLFRGLEGEVQVWMSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLELAGVKRDWTPEHVLEELLREVRERAGKDRVLLAVSGGVDSSTLALLLAKAGVDHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVIESAGGHGAAKIKSHHNVGGLPEDLEFELLEPFRLLFKDEVRELALLLGLPDTLRLRHPFPGPGLAVRVLGEVTEERLEILRRADDIFTSLLREWGLYEKVAQALAVLTPVRSVGVAGDERKYGYVLALRAVTTEDFMTADWARLPLEFLDEAARRITRRVPEIGRVVYDLTSKPPATIEWE 503
               SCOP domains d2ywcc1 C:1-189 GMP synthetase                                                                                                                                                               d2ywcc2 C:190-382 GMP synthetase, central domain                                                                                                                                                 d2ywcc3 C:383-503 GMP synthetase C-terminal dimeri            sation domain                                               SCOP domains
               CATH domains -2ywcC01 C:2-188  [code=3.40.50.880, no name defined]                                                                                                                                       2ywcC02 C:189-378 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                                                                                       ----------------2ywcC03 C:395-502  [code=3.30.300.10,             no name defined]                                          - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhh...eeeee...hhhhhhh....eeee.................hhhhh...eeeehhhhhhhhhhhh.eee......eeeeeeeee.hhhhh......eeeee...eeee.....eeeeee..eeeeeee.....eeee..........hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhhh...eeeeehhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....eee...hhhhhh------------------------..eee......hhhhhhhhhhhh..hhhhhh......hhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeeeee..------------.eeeeeeeee.......ee...hhhhhhhhhhhhhhhh..eeeeeee............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GMPS_ATP_PPASE  PDB: C:190-378 UniProt: 190-378                                                                                                                                              ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ywc C   1 mVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGmQLLAQELGGRVERAGRAEYGKALLTRHEGPLFRGLEGEVQVWmSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGmQILENFLELAGVKRDWTPEHVLEELLREVRERAGKDRVLLAVSGGVDSSTLALLLAKAGVDHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVI------------------------EFELLEPFRLLFKDEVRELALLLGLPDTLRLRHPFPGPGLAVRVLGEVTEERLEILRRADDIFTSLLREWGLYEKVAQALAVLTPV------------GYVLALRAVTTEDFmTADWARLPLEFLDEAARRITRRVPEIGRVVYDLTSKPPATIEWE 503
                            |       10        20        30        40        50        60        70        80|       90       100       110       120   |   130       140       150       160       170   |   180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 |       -         -      |350       360       370       380       390       400       410       420       430 |       -    |  450       460       470       480       490       500   
                            1-MSE                                                                          81-MSE                                    124-MSE                                           174-MSE                                                                                                                                             322                      347                                                                                  432          445           459-MSE                                        


Chain D from PDB  Type:PROTEIN  Length:467
 aligned with GUAA_THET8 | Q5SI28 from UniProtKB/Swiss-Prot  Length:503

    Alignment length:503
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500   
           GUAA_THET8     1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERAGRAEYGKALLTRHEGPLFRGLEGEVQVWMSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLELAGVKRDWTPEHVLEELLREVRERAGKDRVLLAVSGGVDSSTLALLLAKAGVDHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVIESAGGHGAAKIKSHHNVGGLPEDLEFELLEPFRLLFKDEVRELALLLGLPDTLRLRHPFPGPGLAVRVLGEVTEERLEILRRADDIFTSLLREWGLYEKVAQALAVLTPVRSVGVAGDERKYGYVLALRAVTTEDFMTADWARLPLEFLDEAARRITRRVPEIGRVVYDLTSKPPATIEWE 503
               SCOP domains d2ywcd1 D:1-189 GMP synthetase                                                                                                                                                               d2ywcd2 D:190-382 GMP synthetase, central domain                                                                                                                                                 d2ywcd3 D:383-503 GMP synthetase C-terminal dimeris           ation domain                                                SCOP domains
               CATH domains -2ywcD01 D:2-188  [code=3.40.50.880, no name defined]                                                                                                                                       2ywcD02 D:189-378 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                                                                                       ----------------2ywcD03 D:395-502  [code=3.30.300.10, n           o name defined]                                           - CATH domains
           Pfam domains (1) --GATase-2ywcD01 D:3-184                                                                                                                                                                ------------------------------------------------------------------------------------------------------------------------------------------                         --------------------------------------------------------------GMP_synt_C-2ywcD05 D:410           -502                                                      - Pfam domains (1)
           Pfam domains (2) --GATase-2ywcD02 D:3-184                                                                                                                                                                ------------------------------------------------------------------------------------------------------------------------------------------                         --------------------------------------------------------------GMP_synt_C-2ywcD06 D:410           -502                                                      - Pfam domains (2)
           Pfam domains (3) --GATase-2ywcD03 D:3-184                                                                                                                                                                ------------------------------------------------------------------------------------------------------------------------------------------                         --------------------------------------------------------------GMP_synt_C-2ywcD07 D:410           -502                                                      - Pfam domains (3)
           Pfam domains (4) --GATase-2ywcD04 D:3-184                                                                                                                                                                ------------------------------------------------------------------------------------------------------------------------------------------                         --------------------------------------------------------------GMP_synt_C-2ywcD08 D:410           -502                                                      - Pfam domains (4)
         Sec.struct. author .eeeee....hhhhhhhhhhh....eeeee...hhhhhhh.....eee...............hhhhh.....eeee..hhhhhhhh...eee......eeeee..ee.hhhhh......eeeee...eeee.....eeeee.......eee.....eeee..........hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhh..eeeeeee......hhhhhhhhhhhhh...eeeeehhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....eee.........-------------------------.eee......hhhhhhhhhhhh..hhhhhh......hhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeeeeee..-----------.eeeeeeeeee.....eee...hhhhhhhhhhhhhhhh....eeeee............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GMPS_ATP_PPASE  PDB: D:190-378 UniProt: 190-378                                                                                                                                              ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ywc D   1 mVLVLDFGSQYTRLIARRLRELRAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGmQLLAQELGGRVERAGRAEYGKALLTRHEGPLFRGLEGEVQVWmSHQDAVTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFHPEVAHTPKGmQILENFLELAGVKRDWTPEHVLEELLREVRERAGKDRVLLAVSGGVDSSTLALLLAKAGVDHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVI-------------------------FELLEPFRLLFKDEVRELALLLGLPDTLRLRHPFPGPGLAVRVLGEVTEERLEILRRADDIFTSLLREWGLYEKVAQALAVLTPVR-----------GYVLALRAVTTEDFmTADWARLPLEFLDEAARRITRRVPEIGRVVYDLTSKPPATIEWE 503
                            |       10        20        30        40        50        60        70        80|       90       100       110       120   |   130       140       150       160       170   |   180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 |       -         -       350       360       370       380       390       400       410       420       430  |      -    |  450       460       470       480       490       500   
                            1-MSE                                                                          81-MSE                                    124-MSE                                           174-MSE                                                                                                                                             322                       348                                                                                  433         445           459-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: Glutaminase_I (73)
(-)
Clan: no clan defined [family: GMP_synt_C] (3)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (GUAA_THET8 | Q5SI28)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003922    GMP synthase (glutamine-hydrolyzing) activity    Catalysis of the reaction: ATP + xanthosine 5'-phosphate + L-glutamine + H2O = AMP + diphosphate + GMP + L-glutamate.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016462    pyrophosphatase activity    Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments.
biological process
    GO:0006177    GMP biosynthetic process    The chemical reactions and pathways resulting in the formation of GMP, guanosine monophosphate.
    GO:0006541    glutamine metabolic process    The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid.
    GO:0006164    purine nucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.

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  2ywc
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GUAA_THET8 | Q5SI28: 2ywb

(-) Related Entries Specified in the PDB File

2ywb GMP SYNTHETASE FROM THERMUS THERMOPHILUS RELATED ID: TTK003000113.2 RELATED DB: TARGETDB