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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF GMP SYNTHETASE FROM THERMUS THERMOPHILU COMPLEX WITH XMP
Keywords GMP SYNTHETASE, XMP BINDING, ATP BINDING, PURINE NUCLEOTIDE BIOSYNTHETIC PATHWAY, STRUCTURAL GENOMICS, NPPSFA, NATIONAL ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCT GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2YWC     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GMP SYNTHASE [GLUTAMINE-HYDROLYZING]  A 475 3702 40
2  Protein   GMP SYNTHASE [GLUTAMINE-HYDROLYZING]  B 467 3645 40
3  Protein   GMP SYNTHASE [GLUTAMINE-HYDROLYZING]  C 467 3645 40
4  Protein   GMP SYNTHASE [GLUTAMINE-HYDROLYZING]  D 467 3647 40
5  Ligand   GMP SYNTHASE [GLUTAMINE-HYDROLYZING]  A 1 0 24
6  Ligand   GMP SYNTHASE [GLUTAMINE-HYDROLYZING]  B 1 0 24
7  Ligand   GMP SYNTHASE [GLUTAMINE-HYDROLYZING]  C 1 0 24
8  Ligand   GMP SYNTHASE [GLUTAMINE-HYDROLYZING]  D 1 0 24
9 Water     306 0 306
total       2186 14639 562

Proteins
Unit 1 MSE1 VAL2 LEU3 VAL4 LEU5 ASP6 PHE7 GLY8 SER9 GLN10 TYR11 THR12 ARG13 LEU14 ILE15 ALA16 ARG17 ARG18 LEU19 ARG20 GLU21 LEU22 ARG23 ALA24 PHE25 SER26 LEU27 ILE28 LEU29 PRO30 GLY31 ASP32 ALA33 PRO34 LEU35 GLU36 GLU37 VAL38 LEU39 LYS40 HIS41 ARG42 PRO43 GLN44 ALA45 LEU46 ILE47 LEU48 SER49 GLY50 GLY51 PRO52 ARG53 SER54 VAL55 PHE56 ASP57 PRO58 ASP59 ALA60 PRO61 ARG62 PRO63 ASP64 PRO65 ARG66 LEU67 PHE68 SER69 SER70 GLY71 LEU72 PRO73 LEU74 LEU75 GLY76 ILE77 CYS78 TYR79 GLY80 MSE81 GLN82 LEU83 LEU84 ALA85 GLN86 GLU87 LEU88 GLY89 GLY90 ARG91 VAL92 GLU93 ARG94 ALA95 GLY96 ARG97 ALA98 GLU99 TYR100 GLY101 LYS102 ALA103 LEU104 LEU105 THR106 ARG107 HIS108 GLU109 GLY110 PRO111 LEU112 PHE113 ARG114 GLY115 LEU116 GLU117 GLY118 GLU119 VAL120 GLN121 VAL122 TRP123 MSE124 SER125 HIS126 GLN127 ASP128 ALA129 VAL130 THR131 ALA132 PRO133 PRO134 PRO135 GLY136 TRP137 ARG138 VAL139 VAL140 ALA141 GLU142 THR143 GLU144 GLU145 ASN146 PRO147 VAL148 ALA149 ALA150 ILE151 ALA152 SER153 PRO154 ASP155 GLY156 ARG157 ALA158 TYR159 GLY160 VAL161 GLN162 PHE163 HIS164 PRO165 GLU166 VAL167 ALA168 HIS169 THR170 PRO171 LYS172 GLY173 MSE174 GLN175 ILE176 LEU177 GLU178 ASN179 PHE180 LEU181 GLU182 LEU183 ALA184 GLY185 VAL186 LYS187 ARG188 ASP189 TRP190 THR191 PRO192 GLU193 HIS194 VAL195 LEU196 GLU197 GLU198 LEU199 LEU200 ARG201 GLU202 VAL203 ARG204 GLU205 ARG206 ALA207 GLY208 LYS209 ASP210 ARG211 VAL212 LEU213 LEU214 ALA215 VAL216 SER217 GLY218 GLY219 VAL220 ASP221 SER222 SER223 THR224 LEU225 ALA226 LEU227 LEU228 LEU229 ALA230 LYS231 ALA232 GLY233 VAL234 ASP235 HIS236 LEU237 ALA238 VAL239 PHE240 VAL241 ASP242 HIS243 GLY244 LEU245 LEU246 ARG247 LEU248 GLY249 GLU250 ARG251 GLU252 GLU253 VAL254 GLU255 GLY256 ALA257 LEU258 ARG259 ALA260 LEU261 GLY262 VAL263 ASN264 LEU265 LEU266 VAL267 VAL268 ASP269 ALA270 LYS271 GLU272 ARG273 PHE274 LEU275 LYS276 ALA277 LEU278 LYS279 GLY280 VAL281 GLU282 ASP283 PRO284 GLU285 GLU286 LYS287 ARG288 LYS289 ILE290 ILE291 GLY292 ARG293 GLU294 PHE295 VAL296 ALA297 ALA298 PHE299 SER300 GLN301 VAL302 ALA303 ARG304 GLU305 ARG306 GLY307 PRO308 PHE309 ARG310 PHE311 LEU312 ALA313 GLN314 GLY315 THR316 LEU317 TYR318 PRO319 ASP320 VAL321 ILE322 GLU323 GLY340 GLY341 LEU342 PRO343 GLU344 ASP345 LEU346 GLU347 PHE348 GLU349 LEU350 LEU351 GLU352 PRO353 PHE354 ARG355 LEU356 LEU357 PHE358 LYS359 ASP360 GLU361 VAL362 ARG363 GLU364 LEU365 ALA366 LEU367 LEU368 LEU369 GLY370 LEU371 PRO372 ASP373 THR374 LEU375 ARG376 LEU377 ARG378 HIS379 PRO380 PHE381 PRO382 GLY383 PRO384 GLY385 LEU386 ALA387 VAL388 ARG389 VAL390 LEU391 GLY392 GLU393 VAL394 THR395 GLU396 GLU397 ARG398 LEU399 GLU400 ILE401 LEU402 ARG403 ARG404 ALA405 ASP406 ASP407 ILE408 PHE409 THR410 SER411 LEU412 LEU413 ARG414 GLU415 TRP416 GLY417 LEU418 TYR419 GLU420 LYS421 VAL422 ALA423 GLN424 ALA425 LEU426 ALA427 VAL428 LEU429 THR430 PRO431 VAL432 GLY445 TYR446 VAL447 LEU448 ALA449 LEU450 ARG451 ALA452 VAL453 THR454 THR455 GLU456 ASP457 PHE458 MSE459 THR460 ALA461 ASP462 TRP463 ALA464 ARG465 LEU466 PRO467 LEU468 GLU469 PHE470 LEU471 ASP472 GLU473 ALA474 ALA475 ARG476 ARG477 ILE478 THR479 ARG480 ARG481 VAL482 PRO483 GLU484 ILE485 GLY486 ARG487 VAL488 VAL489 TYR490 ASP491 LEU492 THR493 SER494 LYS495 PRO496 PRO497 ALA498 THR499 ILE500 GLU501 TRP502 GLU503
Unit 2 MSE1 VAL2 LEU3 VAL4 LEU5 ASP6 PHE7 GLY8 SER9 GLN10 TYR11 THR12 ARG13 LEU14 ILE15 ALA16 ARG17 ARG18 LEU19 ARG20 GLU21 LEU22 ARG23 ALA24 PHE25 SER26 LEU27 ILE28 LEU29 PRO30 GLY31 ASP32 ALA33 PRO34 LEU35 GLU36 GLU37 VAL38 LEU39 LYS40 HIS41 ARG42 PRO43 GLN44 ALA45 LEU46 ILE47 LEU48 SER49 GLY50 GLY51 PRO52 ARG53 SER54 VAL55 PHE56 ASP57 PRO58 ASP59 ALA60 PRO61 ARG62 PRO63 ASP64 PRO65 ARG66 LEU67 PHE68 SER69 SER70 GLY71 LEU72 PRO73 LEU74 LEU75 GLY76 ILE77 CYS78 TYR79 GLY80 MSE81 GLN82 LEU83 LEU84 ALA85 GLN86 GLU87 LEU88 GLY89 GLY90 ARG91 VAL92 GLU93 ARG94 ALA95 GLY96 ARG97 ALA98 GLU99 TYR100 GLY101 LYS102 ALA103 LEU104 LEU105 THR106 ARG107 HIS108 GLU109 GLY110 PRO111 LEU112 PHE113 ARG114 GLY115 LEU116 GLU117 GLY118 GLU119 VAL120 GLN121 VAL122 TRP123 MSE124 SER125 HIS126 GLN127 ASP128 ALA129 VAL130 THR131 ALA132 PRO133 PRO134 PRO135 GLY136 TRP137 ARG138 VAL139 VAL140 ALA141 GLU142 THR143 GLU144 GLU145 ASN146 PRO147 VAL148 ALA149 ALA150 ILE151 ALA152 SER153 PRO154 ASP155 GLY156 ARG157 ALA158 TYR159 GLY160 VAL161 GLN162 PHE163 HIS164 PRO165 GLU166 VAL167 ALA168 HIS169 THR170 PRO171 LYS172 GLY173 MSE174 GLN175 ILE176 LEU177 GLU178 ASN179 PHE180 LEU181 GLU182 LEU183 ALA184 GLY185 VAL186 LYS187 ARG188 ASP189 TRP190 THR191 PRO192 GLU193 HIS194 VAL195 LEU196 GLU197 GLU198 LEU199 LEU200 ARG201 GLU202 VAL203 ARG204 GLU205 ARG206 ALA207 GLY208 LYS209 ASP210 ARG211 VAL212 LEU213 LEU214 ALA215 VAL216 SER217 GLY218 GLY219 VAL220 ASP221 SER222 SER223 THR224 LEU225 ALA226 LEU227 LEU228 LEU229 ALA230 LYS231 ALA232 GLY233 VAL234 ASP235 HIS236 LEU237 ALA238 VAL239 PHE240 VAL241 ASP242 HIS243 GLY244 LEU245 LEU246 ARG247 LEU248 GLY249 GLU250 ARG251 GLU252 GLU253 VAL254 GLU255 GLY256 ALA257 LEU258 ARG259 ALA260 LEU261 GLY262 VAL263 ASN264 LEU265 LEU266 VAL267 VAL268 ASP269 ALA270 LYS271 GLU272 ARG273 PHE274 LEU275 LYS276 ALA277 LEU278 LYS279 GLY280 VAL281 GLU282 ASP283 PRO284 GLU285 GLU286 LYS287 ARG288 LYS289 ILE290 ILE291 GLY292 ARG293 GLU294 PHE295 VAL296 ALA297 ALA298 PHE299 SER300 GLN301 VAL302 ALA303 ARG304 GLU305 ARG306 GLY307 PRO308 PHE309 ARG310 PHE311 LEU312 ALA313 GLN314 GLY315 THR316 LEU317 TYR318 PRO319 ASP320 VAL321 ILE322 GLU347 PHE348 GLU349 LEU350 LEU351 GLU352 PRO353 PHE354 ARG355 LEU356 LEU357 PHE358 LYS359 ASP360 GLU361 VAL362 ARG363 GLU364 LEU365 ALA366 LEU367 LEU368 LEU369 GLY370 LEU371 PRO372 ASP373 THR374 LEU375 ARG376 LEU377 ARG378 HIS379 PRO380 PHE381 PRO382 GLY383 PRO384 GLY385 LEU386 ALA387 VAL388 ARG389 VAL390 LEU391 GLY392 GLU393 VAL394 THR395 GLU396 GLU397 ARG398 LEU399 GLU400 ILE401 LEU402 ARG403 ARG404 ALA405 ASP406 ASP407 ILE408 PHE409 THR410 SER411 LEU412 LEU413 ARG414 GLU415 TRP416 GLY417 LEU418 TYR419 GLU420 LYS421 VAL422 ALA423 GLN424 ALA425 LEU426 ALA427 VAL428 LEU429 THR430 PRO431 VAL432 GLY445 TYR446 VAL447 LEU448 ALA449 LEU450 ARG451 ALA452 VAL453 THR454 THR455 GLU456 ASP457 PHE458 MSE459 THR460 ALA461 ASP462 TRP463 ALA464 ARG465 LEU466 PRO467 LEU468 GLU469 PHE470 LEU471 ASP472 GLU473 ALA474 ALA475 ARG476 ARG477 ILE478 THR479 ARG480 ARG481 VAL482 PRO483 GLU484 ILE485 GLY486 ARG487 VAL488 VAL489 TYR490 ASP491 LEU492 THR493 SER494 LYS495 PRO496 PRO497 ALA498 THR499 ILE500 GLU501 TRP502 GLU503
Unit 3 MSE1 VAL2 LEU3 VAL4 LEU5 ASP6 PHE7 GLY8 SER9 GLN10 TYR11 THR12 ARG13 LEU14 ILE15 ALA16 ARG17 ARG18 LEU19 ARG20 GLU21 LEU22 ARG23 ALA24 PHE25 SER26 LEU27 ILE28 LEU29 PRO30 GLY31 ASP32 ALA33 PRO34 LEU35 GLU36 GLU37 VAL38 LEU39 LYS40 HIS41 ARG42 PRO43 GLN44 ALA45 LEU46 ILE47 LEU48 SER49 GLY50 GLY51 PRO52 ARG53 SER54 VAL55 PHE56 ASP57 PRO58 ASP59 ALA60 PRO61 ARG62 PRO63 ASP64 PRO65 ARG66 LEU67 PHE68 SER69 SER70 GLY71 LEU72 PRO73 LEU74 LEU75 GLY76 ILE77 CYS78 TYR79 GLY80 MSE81 GLN82 LEU83 LEU84 ALA85 GLN86 GLU87 LEU88 GLY89 GLY90 ARG91 VAL92 GLU93 ARG94 ALA95 GLY96 ARG97 ALA98 GLU99 TYR100 GLY101 LYS102 ALA103 LEU104 LEU105 THR106 ARG107 HIS108 GLU109 GLY110 PRO111 LEU112 PHE113 ARG114 GLY115 LEU116 GLU117 GLY118 GLU119 VAL120 GLN121 VAL122 TRP123 MSE124 SER125 HIS126 GLN127 ASP128 ALA129 VAL130 THR131 ALA132 PRO133 PRO134 PRO135 GLY136 TRP137 ARG138 VAL139 VAL140 ALA141 GLU142 THR143 GLU144 GLU145 ASN146 PRO147 VAL148 ALA149 ALA150 ILE151 ALA152 SER153 PRO154 ASP155 GLY156 ARG157 ALA158 TYR159 GLY160 VAL161 GLN162 PHE163 HIS164 PRO165 GLU166 VAL167 ALA168 HIS169 THR170 PRO171 LYS172 GLY173 MSE174 GLN175 ILE176 LEU177 GLU178 ASN179 PHE180 LEU181 GLU182 LEU183 ALA184 GLY185 VAL186 LYS187 ARG188 ASP189 TRP190 THR191 PRO192 GLU193 HIS194 VAL195 LEU196 GLU197 GLU198 LEU199 LEU200 ARG201 GLU202 VAL203 ARG204 GLU205 ARG206 ALA207 GLY208 LYS209 ASP210 ARG211 VAL212 LEU213 LEU214 ALA215 VAL216 SER217 GLY218 GLY219 VAL220 ASP221 SER222 SER223 THR224 LEU225 ALA226 LEU227 LEU228 LEU229 ALA230 LYS231 ALA232 GLY233 VAL234 ASP235 HIS236 LEU237 ALA238 VAL239 PHE240 VAL241 ASP242 HIS243 GLY244 LEU245 LEU246 ARG247 LEU248 GLY249 GLU250 ARG251 GLU252 GLU253 VAL254 GLU255 GLY256 ALA257 LEU258 ARG259 ALA260 LEU261 GLY262 VAL263 ASN264 LEU265 LEU266 VAL267 VAL268 ASP269 ALA270 LYS271 GLU272 ARG273 PHE274 LEU275 LYS276 ALA277 LEU278 LYS279 GLY280 VAL281 GLU282 ASP283 PRO284 GLU285 GLU286 LYS287 ARG288 LYS289 ILE290 ILE291 GLY292 ARG293 GLU294 PHE295 VAL296 ALA297 ALA298 PHE299 SER300 GLN301 VAL302 ALA303 ARG304 GLU305 ARG306 GLY307 PRO308 PHE309 ARG310 PHE311 LEU312 ALA313 GLN314 GLY315 THR316 LEU317 TYR318 PRO319 ASP320 VAL321 ILE322 GLU347 PHE348 GLU349 LEU350 LEU351 GLU352 PRO353 PHE354 ARG355 LEU356 LEU357 PHE358 LYS359 ASP360 GLU361 VAL362 ARG363 GLU364 LEU365 ALA366 LEU367 LEU368 LEU369 GLY370 LEU371 PRO372 ASP373 THR374 LEU375 ARG376 LEU377 ARG378 HIS379 PRO380 PHE381 PRO382 GLY383 PRO384 GLY385 LEU386 ALA387 VAL388 ARG389 VAL390 LEU391 GLY392 GLU393 VAL394 THR395 GLU396 GLU397 ARG398 LEU399 GLU400 ILE401 LEU402 ARG403 ARG404 ALA405 ASP406 ASP407 ILE408 PHE409 THR410 SER411 LEU412 LEU413 ARG414 GLU415 TRP416 GLY417 LEU418 TYR419 GLU420 LYS421 VAL422 ALA423 GLN424 ALA425 LEU426 ALA427 VAL428 LEU429 THR430 PRO431 VAL432 GLY445 TYR446 VAL447 LEU448 ALA449 LEU450 ARG451 ALA452 VAL453 THR454 THR455 GLU456 ASP457 PHE458 MSE459 THR460 ALA461 ASP462 TRP463 ALA464 ARG465 LEU466 PRO467 LEU468 GLU469 PHE470 LEU471 ASP472 GLU473 ALA474 ALA475 ARG476 ARG477 ILE478 THR479 ARG480 ARG481 VAL482 PRO483 GLU484 ILE485 GLY486 ARG487 VAL488 VAL489 TYR490 ASP491 LEU492 THR493 SER494 LYS495 PRO496 PRO497 ALA498 THR499 ILE500 GLU501 TRP502 GLU503
Unit 4 MSE1 VAL2 LEU3 VAL4 LEU5 ASP6 PHE7 GLY8 SER9 GLN10 TYR11 THR12 ARG13 LEU14 ILE15 ALA16 ARG17 ARG18 LEU19 ARG20 GLU21 LEU22 ARG23 ALA24 PHE25 SER26 LEU27 ILE28 LEU29 PRO30 GLY31 ASP32 ALA33 PRO34 LEU35 GLU36 GLU37 VAL38 LEU39 LYS40 HIS41 ARG42 PRO43 GLN44 ALA45 LEU46 ILE47 LEU48 SER49 GLY50 GLY51 PRO52 ARG53 SER54 VAL55 PHE56 ASP57 PRO58 ASP59 ALA60 PRO61 ARG62 PRO63 ASP64 PRO65 ARG66 LEU67 PHE68 SER69 SER70 GLY71 LEU72 PRO73 LEU74 LEU75 GLY76 ILE77 CYS78 TYR79 GLY80 MSE81 GLN82 LEU83 LEU84 ALA85 GLN86 GLU87 LEU88 GLY89 GLY90 ARG91 VAL92 GLU93 ARG94 ALA95 GLY96 ARG97 ALA98 GLU99 TYR100 GLY101 LYS102 ALA103 LEU104 LEU105 THR106 ARG107 HIS108 GLU109 GLY110 PRO111 LEU112 PHE113 ARG114 GLY115 LEU116 GLU117 GLY118 GLU119 VAL120 GLN121 VAL122 TRP123 MSE124 SER125 HIS126 GLN127 ASP128 ALA129 VAL130 THR131 ALA132 PRO133 PRO134 PRO135 GLY136 TRP137 ARG138 VAL139 VAL140 ALA141 GLU142 THR143 GLU144 GLU145 ASN146 PRO147 VAL148 ALA149 ALA150 ILE151 ALA152 SER153 PRO154 ASP155 GLY156 ARG157 ALA158 TYR159 GLY160 VAL161 GLN162 PHE163 HIS164 PRO165 GLU166 VAL167 ALA168 HIS169 THR170 PRO171 LYS172 GLY173 MSE174 GLN175 ILE176 LEU177 GLU178 ASN179 PHE180 LEU181 GLU182 LEU183 ALA184 GLY185 VAL186 LYS187 ARG188 ASP189 TRP190 THR191 PRO192 GLU193 HIS194 VAL195 LEU196 GLU197 GLU198 LEU199 LEU200 ARG201 GLU202 VAL203 ARG204 GLU205 ARG206 ALA207 GLY208 LYS209 ASP210 ARG211 VAL212 LEU213 LEU214 ALA215 VAL216 SER217 GLY218 GLY219 VAL220 ASP221 SER222 SER223 THR224 LEU225 ALA226 LEU227 LEU228 LEU229 ALA230 LYS231 ALA232 GLY233 VAL234 ASP235 HIS236 LEU237 ALA238 VAL239 PHE240 VAL241 ASP242 HIS243 GLY244 LEU245 LEU246 ARG247 LEU248 GLY249 GLU250 ARG251 GLU252 GLU253 VAL254 GLU255 GLY256 ALA257 LEU258 ARG259 ALA260 LEU261 GLY262 VAL263 ASN264 LEU265 LEU266 VAL267 VAL268 ASP269 ALA270 LYS271 GLU272 ARG273 PHE274 LEU275 LYS276 ALA277 LEU278 LYS279 GLY280 VAL281 GLU282 ASP283 PRO284 GLU285 GLU286 LYS287 ARG288 LYS289 ILE290 ILE291 GLY292 ARG293 GLU294 PHE295 VAL296 ALA297 ALA298 PHE299 SER300 GLN301 VAL302 ALA303 ARG304 GLU305 ARG306 GLY307 PRO308 PHE309 ARG310 PHE311 LEU312 ALA313 GLN314 GLY315 THR316 LEU317 TYR318 PRO319 ASP320 VAL321 ILE322 PHE348 GLU349 LEU350 LEU351 GLU352 PRO353 PHE354 ARG355 LEU356 LEU357 PHE358 LYS359 ASP360 GLU361 VAL362 ARG363 GLU364 LEU365 ALA366 LEU367 LEU368 LEU369 GLY370 LEU371 PRO372 ASP373 THR374 LEU375 ARG376 LEU377 ARG378 HIS379 PRO380 PHE381 PRO382 GLY383 PRO384 GLY385 LEU386 ALA387 VAL388 ARG389 VAL390 LEU391 GLY392 GLU393 VAL394 THR395 GLU396 GLU397 ARG398 LEU399 GLU400 ILE401 LEU402 ARG403 ARG404 ALA405 ASP406 ASP407 ILE408 PHE409 THR410 SER411 LEU412 LEU413 ARG414 GLU415 TRP416 GLY417 LEU418 TYR419 GLU420 LYS421 VAL422 ALA423 GLN424 ALA425 LEU426 ALA427 VAL428 LEU429 THR430 PRO431 VAL432 ARG433 GLY445 TYR446 VAL447 LEU448 ALA449 LEU450 ARG451 ALA452 VAL453 THR454 THR455 GLU456 ASP457 PHE458 MSE459 THR460 ALA461 ASP462 TRP463 ALA464 ARG465 LEU466 PRO467 LEU468 GLU469 PHE470 LEU471 ASP472 GLU473 ALA474 ALA475 ARG476 ARG477 ILE478 THR479 ARG480 ARG481 VAL482 PRO483 GLU484 ILE485 GLY486 ARG487 VAL488 VAL489 TYR490 ASP491 LEU492 THR493 SER494 LYS495 PRO496 PRO497 ALA498 THR499 ILE500 GLU501 TRP502 GLU503

Ligands
Unit 5 XMP701
Unit 6 XMP702
Unit 7 XMP703
Unit 8 XMP704

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany