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(-) Description

Title :  CRYSTAL STRUCTURE OF UNCHARACTERIZED CONSERVED PROTEIN FROM THERMUS THERMOPHILUS HB8
 
Authors :  Y. Kitamura, S. Yokoyama, S. Kuramitsu, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  20 Apr 07  (Deposition) - 23 Oct 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Uncharacterized Conserved Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kitamura, S. Yokoyama, S. Kuramitsu
Crystal Structure Of Uncharacterized Conserved Protein From Thermus Thermophilus Hb8
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TTHA0048
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-11A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8
    Synonym: UNCHARACTERIZED CONSERVED PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2YWA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YWA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2YWA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YWA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2YWA)

(-) Exons   (0, 0)

(no "Exon" information available for 2YWA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:115
 aligned with Q5SM95_THET8 | Q5SM95 from UniProtKB/TrEMBL  Length:119

    Alignment length:115
                                    11        21        31        41        51        61        71        81        91       101       111     
         Q5SM95_THET8     2 ASLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEMLELRNLTNHTYDEALAERIYAELPKALERFQELLRRLE 116
               SCOP domains d2ywaa1 A:2-116 Probable nucleotidyltransferase subunit TTHA0048                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 2ywa A   2 ASLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEmLELRNLTNHTYDEALAERIYAELPKALERFQELLRRLE 116
                                    11        21        31        41        51        61        71      | 81        91       101       111     
                                                                                                       78-MSE                                  


Chain B from PDB  Type:PROTEIN  Length:115
 aligned with Q5SM95_THET8 | Q5SM95 from UniProtKB/TrEMBL  Length:119

    Alignment length:115
                                    11        21        31        41        51        61        71        81        91       101       111     
         Q5SM95_THET8     2 ASLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEMLELRNLTNHTYDEALAERIYAELPKALERFQELLRRLE 116
               SCOP domains d2ywab1 B:2-116 Probable nucleotidyltransferase subunit TTHA0048                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 2ywa B   2 ASLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEmLELRNLTNHTYDEALAERIYAELPKALERFQELLRRLE 116
                                    11        21        31        41        51        61        71      | 81        91       101       111     
                                                                                                       78-MSE                                  


Chain C from PDB  Type:PROTEIN  Length:114
 aligned with Q5SM95_THET8 | Q5SM95 from UniProtKB/TrEMBL  Length:119

    Alignment length:114
                                    12        22        32        42        52        62        72        82        92       102       112    
         Q5SM95_THET8     3 SLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEMLELRNLTNHTYDEALAERIYAELPKALERFQELLRRLE 116
               SCOP domains d2ywac1 C:3-116 Probable nucleotidyltransferase subunit TTHA0048                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 2ywa C   3 SLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEmLELRNLTNHTYDEALAERIYAELPKALERFQELLRRLE 116
                                    12        22        32        42        52        62        72     |  82        92       102       112    
                                                                                                      78-MSE                                  


Chain D from PDB  Type:PROTEIN  Length:115
 aligned with Q5SM95_THET8 | Q5SM95 from UniProtKB/TrEMBL  Length:119

    Alignment length:115
                                    11        21        31        41        51        61        71        81        91       101       111     
         Q5SM95_THET8     2 ASLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEMLELRNLTNHTYDEALAERIYAELPKALERFQELLRRLE 116
               SCOP domains d2ywad1 D:2-116 Probable nucleotidyltransferase subunit TTHA0048                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) NTase_sub_bind-2ywaD01 D:2-116                                                                                      Pfam domains (1)
           Pfam domains (2) NTase_sub_bind-2ywaD02 D:2-116                                                                                      Pfam domains (2)
           Pfam domains (3) NTase_sub_bind-2ywaD03 D:2-116                                                                                      Pfam domains (3)
           Pfam domains (4) NTase_sub_bind-2ywaD04 D:2-116                                                                                      Pfam domains (4)
         Sec.struct. author .hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 2ywa D   2 ASLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEmLELRNLTNHTYDEALAERIYAELPKALERFQELLRRLE 116
                                    11        21        31        41        51        61        71      | 81        91       101       111     
                                                                                                       78-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YWA)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: KNTase_C (11)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2YWA)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5SM95_THET8 | Q5SM95: 1wty

(-) Related Entries Specified in the PDB File

1wty OTHER SPACE GROUP STURUCTURE RELATED ID: TTK003001902.2 RELATED DB: TARGETDB