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(-) Description

Title :  CRYSTAL STRUCTURE OF A PROBABLE NUCLEOTIDYL TRANSFERASE PROTEIN FROM THERMUS THERMOPHILUS HB8
 
Authors :  Y. Kitamura, S. Yokoyama, S. Kuramitsu, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  29 Nov 04  (Deposition) - 07 Dec 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Kitamura, S. Yokoyama, S. Kuramitsu
Crystal Structure Of A Probable Nucleotidyltransferase Protein From Thermus Thermophilus Hb8
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TTHA0048
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET11A
    Expression System StrainB834(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    Organism ScientificTHERMUS THERMOPHILUS
    Organism Taxid300852
    StrainHB8
    SynonymPROBABLE NUCLEOTIDYLTRANSFERASE PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1WTY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WTY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WTY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WTY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WTY)

(-) Exons   (0, 0)

(no "Exon" information available for 1WTY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:116
 aligned with Q5SM95_THET8 | Q5SM95 from UniProtKB/TrEMBL  Length:119

    Alignment length:116
                                    11        21        31        41        51        61        71        81        91       101       111      
         Q5SM95_THET8     2 ASLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEMLELRNLTNHTYDEALAERIYAELPKALERFQELLRRLEE 117
               SCOP domains d1wtya_ A: Probable nucleotidyltransferase subunit TTHA0048                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 1wty A   2 ASLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEmLELRNLTNHTYDEALAERIYAELPKALERFQELLRRLEE 117
                                    11        21        31        41        51        61        71      | 81        91       101       111      
                                                                                                       78-MSE                                   

Chain B from PDB  Type:PROTEIN  Length:114
 aligned with Q5SM95_THET8 | Q5SM95 from UniProtKB/TrEMBL  Length:119

    Alignment length:114
                                    12        22        32        42        52        62        72        82        92       102       112    
         Q5SM95_THET8     3 SLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEMLELRNLTNHTYDEALAERIYAELPKALERFQELLRRLE 116
               SCOP domains d1wtyb_ B: Probable nucleotidyltransferase subunit TTHA0048                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 1wty B   3 SLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEmLELRNLTNHTYDEALAERIYAELPKALERFQELLRRLE 116
                                    12        22        32        42        52        62        72     |  82        92       102       112    
                                                                                                      78-MSE                                  

Chain C from PDB  Type:PROTEIN  Length:115
 aligned with Q5SM95_THET8 | Q5SM95 from UniProtKB/TrEMBL  Length:119

    Alignment length:115
                                    11        21        31        41        51        61        71        81        91       101       111     
         Q5SM95_THET8     2 ASLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEMLELRNLTNHTYDEALAERIYAELPKALERFQELLRRLE 116
               SCOP domains d1wtyc_ C: Probable nucleotidyltransferase subunit TTHA0048                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 1wty C   2 ASLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEmLELRNLTNHTYDEALAERIYAELPKALERFQELLRRLE 116
                                    11        21        31        41        51        61        71      | 81        91       101       111     
                                                                                                       78-MSE                                  

Chain D from PDB  Type:PROTEIN  Length:114
 aligned with Q5SM95_THET8 | Q5SM95 from UniProtKB/TrEMBL  Length:119

    Alignment length:114
                                    12        22        32        42        52        62        72        82        92       102       112    
         Q5SM95_THET8     3 SLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEMLELRNLTNHTYDEALAERIYAELPKALERFQELLRRLE 116
               SCOP domains d1wtyd_ D: Probable nucleotidyltransferase subunit TTHA0048                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) NTase_sub_bind-1wtyD01 D:3-116                                                                                     Pfam domains (1)
           Pfam domains (2) NTase_sub_bind-1wtyD02 D:3-116                                                                                     Pfam domains (2)
           Pfam domains (3) NTase_sub_bind-1wtyD03 D:3-116                                                                                     Pfam domains (3)
           Pfam domains (4) NTase_sub_bind-1wtyD04 D:3-116                                                                                     Pfam domains (4)
         Sec.struct. author hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 1wty D   3 SLARAVERLKAALERPKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPEDPFWLEmLELRNLTNHTYDEALAERIYAELPKALERFQELLRRLE 116
                                    12        22        32        42        52        62        72     |  82        92       102       112    
                                                                                                      78-MSE                                  

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WTY)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: KNTase_C (11)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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