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(-) Description

Title :  SOLUTION STRUCTURE OF C2H2 TYPE ZINC FINGER DOMAIN 3 IN ZINC FINGER PROTEIN 32
 
Authors :  N. Kasahara, K. Tsuda, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  05 Apr 07  (Deposition) - 09 Oct 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Zinc-Finger Domain, C2H2, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Kasahara, K. Tsuda, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of C2H2 Type Zinc Finger Domain 3 In Zinc Finger Protein 32
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ZINC FINGER PROTEIN 32
    Chains: A
    Engineered: YES
    Expression System Plasmid: P061204-05
    Expression System Vector Type: PLASMID
    Fragment: ZINC-FINGER MOTIF
    Gene: ZNF32, KOX30
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL-FREE PROTEIN SYNTHESIS
    Synonym: ZINC FINGER PROTEIN KOX30, C2H2-546

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:141 , CYS A:144 , HIS A:157 , HIS A:161BINDING SITE FOR RESIDUE ZN A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YTA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2YTA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YTA)

(-) PROSITE Motifs  (1, 3)

NMR Structure (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZINC_FINGER_C2H2_1PS00028 Zinc finger C2H2 type domain signature.ZNF32_HUMAN79-99
107-127
135-155
163-183
191-211
219-239		  3A:132-133
-
A:141-161
A:167-167
-
-

(-) Exons   (1, 1)

NMR Structure (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000003957972aENSE00001522889chr10:44144152-44144033120ZNF32_HUMAN-00--
1.3bENST000003957973bENSE00002183662chr10:44141650-44141512139ZNF32_HUMAN1-24240--
1.4cENST000003957974cENSE00001463502chr10:44140249-44139308942ZNF32_HUMAN24-2732501A:129-169 (gaps)146

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:41
 aligned with ZNF32_HUMAN | P17041 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:146
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179      
          ZNF32_HUMAN    40 GSSSWDIQNSFRREKLEQKSPDSKTLQEDSPGVRQRVYECQECGKSFRQKGSLTLHERIHTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKPYQCKECGKSFSQRGSLAVHERLHTGQKPYECAICQRSFRNQSNLAVHRRVHSG 185
               SCOP domains ----------------------------------------------------------------------------------------d2ytaa1 A:134-161           ------------------------------ SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------------------------------------------------------------------------------------------zf-H2C2_2------------------------------ Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------------------------------------------------------------zf-H2C2_2------------------------------ Pfam domains (2)
         Sec.struct. author ...-----------------------------------------------..------------------------------------................hhhhhhhhhhh......-------------.---------.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C2H2_1   -------ZINC_FINGER_C2H2_1   -- PROSITE
               Transcript 1 Exon 1.4c  PDB: A:129-169 (gaps) UniProt: 24-273 [INCOMPLETE]                                                                                      Transcript 1
                 2yta A 129 GSS-----------------------------------------------GS------------------------------------SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP-------------S---------SG 169
                              |      -         -         -         -         -||       -         -         -       135       145       155       165|        -    |    -    | 
                              |                                             132|                                  134                             166           167       168 
                            131                                              133
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YTA)

(-) Pfam Domains  (1, 2)

NMR Structure
(-)
Clan: C2H2-zf (71)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (ZNF32_HUMAN | P17041)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

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UniProtKB/Swiss-Prot
        ZNF32_HUMAN | P17041: 2epc 2ept 2epu 2ytb

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