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(-) Description

Title :  MHV-68 LANA (ORF73) C-TERMINAL DOMAIN: TRICLINIC CRYSTAL FORM
 
Authors :  J. Hellert, J. Krausze, T. Luhrs
Date :  02 Nov 12  (Deposition) - 13 Nov 13  (Release) - 29 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  C,D  (1x)
Biol. Unit 2:  A,B  (1x)
Keywords :  Viral Protein, Muhv-4, Murid Herpesvirus 68, Latency- Associated Nuclear Antigen, Lana-1, Mlana, Dna-Binding Domain, Origin-Binding Domain, Oligomerization Domain, Kaposi'S Sarcoma-Associated Herpesvirus, Kshv, Gammaherpesvirus, Rhadinovirus, Primary Effusion Lymphoma, Multicentric Castleman'S Disease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Hellert, M. Weidner-Glunde, J. Krausze, U. Richter, H. Adler, R. Fedorov, M. Pietrek, J. Ruckert, C. Ritter, T. F. Schulz, T. Luhrs
A Structural Basis For Brd2/4-Mediated Host Chromatin Interaction And Oligomer Assembly Of Kaposi Sarcoma- Associated Herpesvirus And Murine Gammaherpesvirus Lana Proteins.
Plos Pathog. V. 9 3640 2013
PubMed-ID: 24146614  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1003640

(-) Compounds

Molecule 1 - ORF73
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET BASED
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN, RESIDUES 124-260
    Organism Scientific: MURID HERPESVIRUS 4
    Organism Taxid: 33708
    Strain: 68
    Synonym: MHV-68 LANA, IMMEDIATE-EARLY PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x):   CD
Biological Unit 2 (1x): AB  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2YQ1)

(-) Sites  (0, 0)

(no "Site" information available for 2YQ1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YQ1)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Pro A:206 -Gly A:207
2Lys A:253 -Pro A:254
3Lys B:253 -Pro B:254
4Pro C:206 -Gly C:207
5Lys C:253 -Pro C:254
6Lys D:253 -Pro D:254

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YQ1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2YQ1)

(-) Exons   (0, 0)

(no "Exon" information available for 2YQ1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:130
 aligned with O41974_MHV68 | O41974 from UniProtKB/TrEMBL  Length:314

    Alignment length:130
                                   139       149       159       169       179       189       199       209       219       229       239       249       259
         O41974_MHV68   130 QKPHNPSDPLPKKYQGMRRHLQVTAPRLFDPEGHPPTHFKSAVMFSSTHPYTLNKLHKCIQSKHVLSTPVSCLPLVPGTTQQCVTYYLLSFVEDKKQAKKLKRVVLAYCEKYHSSVEGTIVKAKPYFPLP 259
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhh................eeeeeee....hhhhhhhh......ee...ee.............eeeeeee..hhhhhhhhhhhhhhhhhh....eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yq1 A 130 QKPHNPSDPLPKKYQGMRRHLQVTAPRLFDPEGHPPTHFKSAVMFSSTHPYTLNKLHKCIQSKHVLSTPVSCLPLVPGTTQQCVTYYLLSFVEDKKQAKKLKRVVLAYCEKYHSSVEGTIVKAKPYFPLP 259
                                   139       149       159       169       179       189       199       209       219       229       239       249       259


Chain B from PDB  Type:PROTEIN  Length:127
 aligned with O41974_MHV68 | O41974 from UniProtKB/TrEMBL  Length:314

    Alignment length:131
                                   139       149       159       169       179       189       199       209       219       229       239       249       259 
         O41974_MHV68   130 QKPHNPSDPLPKKYQGMRRHLQVTAPRLFDPEGHPPTHFKSAVMFSSTHPYTLNKLHKCIQSKHVLSTPVSCLPLVPGTTQQCVTYYLLSFVEDKKQAKKLKRVVLAYCEKYHSSVEGTIVKAKPYFPLPE 260
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhh.hhhh...........eeeeeee..hhhhhhhhhh......ee...ee......----...eeeeeee..hhhhhhhhhhhhhhhhhh....eeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yq1 B 130 QKPHNPSDPLPKKYQGMRRHLQVTAPRLFDPEGHPPTHFKSAVMFSSTHPYTLNKLHKCIQSKHVLSTPVSCLPLVPG----CVTYYLLSFVEDKKQAKKLKRVVLAYCEKYHSSVEGTIVKAKPYFPLPE 260
                                   139       149       159       169       179       189       199       | -  |    219       229       239       249       259 
                                                                                                       207  212                                                


Chain C from PDB  Type:PROTEIN  Length:131
 aligned with O41974_MHV68 | O41974 from UniProtKB/TrEMBL  Length:314

    Alignment length:131
                                   139       149       159       169       179       189       199       209       219       229       239       249       259 
         O41974_MHV68   130 QKPHNPSDPLPKKYQGMRRHLQVTAPRLFDPEGHPPTHFKSAVMFSSTHPYTLNKLHKCIQSKHVLSTPVSCLPLVPGTTQQCVTYYLLSFVEDKKQAKKLKRVVLAYCEKYHSSVEGTIVKAKPYFPLPE 260
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhh................eeeeeee....hhhhhhhh......ee...ee.............eeeeeee..hhhhhhhhhhhhhhhhhh....eeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yq1 C 130 QKPHNPSDPLPKKYQGMRRHLQVTAPRLFDPEGHPPTHFKSAVMFSSTHPYTLNKLHKCIQSKHVLSTPVSCLPLVPGTTQQCVTYYLLSFVEDKKQAKKLKRVVLAYCEKYHSSVEGTIVKAKPYFPLPE 260
                                   139       149       159       169       179       189       199       209       219       229       239       249       259 


Chain D from PDB  Type:PROTEIN  Length:128
 aligned with O41974_MHV68 | O41974 from UniProtKB/TrEMBL  Length:314

    Alignment length:131
                                   139       149       159       169       179       189       199       209       219       229       239       249       259 
         O41974_MHV68   130 QKPHNPSDPLPKKYQGMRRHLQVTAPRLFDPEGHPPTHFKSAVMFSSTHPYTLNKLHKCIQSKHVLSTPVSCLPLVPGTTQQCVTYYLLSFVEDKKQAKKLKRVVLAYCEKYHSSVEGTIVKAKPYFPLPE 260
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhh.hhhh...........eeeeeee..hhhhhhhhhh......ee...ee.......---...eeeeeee..hhhhhhhhhhhhhhhhhh....eeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yq1 D 130 QKPHNPSDPLPKKYQGMRRHLQVTAPRLFDPEGHPPTHFKSAVMFSSTHPYTLNKLHKCIQSKHVLSTPVSCLPLVPGT---CVTYYLLSFVEDKKQAKKLKRVVLAYCEKYHSSVEGTIVKAKPYFPLPE 260
                                   139       149       159       169       179       189       199        |-  |    219       229       239       249       259 
                                                                                                        208 212
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2YQ1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YQ1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2YQ1)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (O41974_MHV68 | O41974)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

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  Cis Peptide Bonds
    Lys A:253 - Pro A:254   [ RasMol ]  
    Lys B:253 - Pro B:254   [ RasMol ]  
    Lys C:253 - Pro C:254   [ RasMol ]  
    Lys D:253 - Pro D:254   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O41974_MHV68 | O41974: 4blg

(-) Related Entries Specified in the PDB File

2ypy KSHV LANA (ORF73) C-TERMINAL DOMAIN, DECAMERIC RING: MONOCLINIC CRYSTAL FORM
2ypz KSHV LANA (ORF73) C-TERMINAL DOMAIN, DECAMERIC RING: ORTHORHOMBIC CRYSTAL FORM
2yq0 KSHV LANA (ORF73) C-TERMINAL DOMAIN, OCTAMERIC RING: CUBIC CRYSTAL FORM