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(-) Description

Title :  CRYSTALLIZATION OF A 45 KDA PEROXYGENASE- PEROXIDASE FROM THE MUSHROOM AGROCYBE AEGERITA AND STRUCTURE DETERMINATION BY SAD UTILIZING ONLY THE HAEM IRON
 
Authors :  K. Piontek, E. Strittmatter, R. Ullrich, D. A. Plattner, M. Hofrichter
Date :  29 Oct 12  (Deposition) - 23 Oct 13  (Release) - 01 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.31
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Oxidoreductase, Peroxidase/Peroxygenase, Unspecific/Aromatic Peroxygenase, Heme, Glycoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Piontek, E. Strittmatter, R. Ullrich, G. Grobe, M. J. Pecyna, M. Kluge, K. Scheibner, M. Hofrichter, D. A. Plattner
Structural Basis Of Substrate Conversion In A New Aromatic Peroxygenase: P450 Functionality With Benefits
J. Biol. Chem. V. 288 34767 2013
PubMed-ID: 24126915  |  Reference-DOI: 10.1074/JBC.M113.514521
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - AROMATIC PEROXYGENASE
    Chains: A, B, C, D
    EC Number: 1.11.2.1
    Organism Scientific: AGROCYBE AEGERITA
    Organism Taxid: 5400
    Other Details: GERMAN COLLECTION OF MICROORGANISMS (DSM), ACCESS NUMBER DSMZ 22459
    Strain: TM-A1
    Synonym: AAP

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 86)

Asymmetric Unit (7, 86)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2BMA7Ligand/IonBETA-D-MANNOSE
3HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4MAN17Ligand/IonALPHA-D-MANNOSE
5MG4Ligand/IonMAGNESIUM ION
6NAG36Ligand/IonN-ACETYL-D-GLUCOSAMINE
7SO413Ligand/IonSULFATE ION
Biological Unit 1 (6, 46)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2BMA4Ligand/IonBETA-D-MANNOSE
3HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4MAN10Ligand/IonALPHA-D-MANNOSE
5MG-1Ligand/IonMAGNESIUM ION
6NAG19Ligand/IonN-ACETYL-D-GLUCOSAMINE
7SO48Ligand/IonSULFATE ION
Biological Unit 2 (6, 36)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2BMA3Ligand/IonBETA-D-MANNOSE
3HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4MAN7Ligand/IonALPHA-D-MANNOSE
5MG-1Ligand/IonMAGNESIUM ION
6NAG17Ligand/IonN-ACETYL-D-GLUCOSAMINE
7SO45Ligand/IonSULFATE ION

(-) Sites  (46, 46)

Asymmetric Unit (46, 46)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:35 , CYS A:36 , PRO A:37 , LEU A:39 , VAL A:63 , PHE A:69 , ALA A:77 , THR A:78 , ALA A:81 , PHE A:121 , GLU A:122 , GLY A:123 , SER A:126 , MET A:127 , THR A:128 , ARG A:189 , GLU A:196 , PHE A:199 , PHE A:204 , MG A:353 , ACT A:1327 , HOH A:2041 , HOH A:2123 , HOH A:2159BINDING SITE FOR RESIDUE HEM A 350
02AC2SOFTWAREGLU A:122 , GLY A:123 , SER A:126 , HEM A:350 , HOH A:2123 , HOH A:2124BINDING SITE FOR RESIDUE MG A 353
03AC3SOFTWAREALA A:77 , GLU A:196 , PHE A:199 , HEM A:350 , HOH A:2323BINDING SITE FOR RESIDUE ACT A1327
04AC4SOFTWARECYS B:36 , PRO B:37 , GLY B:38 , VAL B:63 , PHE B:69 , ALA B:77 , THR B:78 , PHE B:121 , GLU B:122 , GLY B:123 , SER B:126 , MET B:127 , THR B:128 , ARG B:189 , GLU B:196 , PHE B:199 , LEU B:203 , MG B:353 , ACT B:1328 , HOH B:2157 , HOH B:2199BINDING SITE FOR RESIDUE HEM B 350
05AC5SOFTWAREGLU B:122 , GLY B:123 , SER B:126 , HEM B:350 , HOH B:2157 , HOH B:2158BINDING SITE FOR RESIDUE MG B 353
06AC6SOFTWAREGLU B:196 , PHE B:199 , HEM B:350 , HOH B:2368BINDING SITE FOR RESIDUE ACT B1328
07AC7SOFTWAREPRO C:35 , CYS C:36 , PRO C:37 , GLY C:38 , PHE C:69 , ALA C:77 , THR C:78 , ALA C:81 , PHE C:121 , GLU C:122 , GLY C:123 , SER C:126 , MET C:127 , THR C:128 , ARG C:189 , GLU C:196 , PHE C:199 , LEU C:203 , MG C:353 , ACT C:1329 , HOH C:2131BINDING SITE FOR RESIDUE HEM C 350
08AC8SOFTWAREGLU C:122 , GLY C:123 , SER C:126 , HEM C:350 , HOH C:2131 , HOH C:2132BINDING SITE FOR RESIDUE MG C 353
09AC9SOFTWAREALA C:77 , PHE C:121 , THR C:192 , GLU C:196 , PHE C:199 , HEM C:350BINDING SITE FOR RESIDUE ACT C1329
10BC1SOFTWARECYS D:36 , PRO D:37 , GLY D:38 , LEU D:39 , PHE D:69 , ALA D:77 , THR D:78 , ALA D:81 , PHE D:121 , GLU D:122 , GLY D:123 , SER D:126 , MET D:127 , THR D:128 , ARG D:189 , GLU D:196 , PHE D:199 , LEU D:203 , MG D:353 , ACT D:1327 , HOH D:2029 , HOH D:2083 , HOH D:2104BINDING SITE FOR RESIDUE HEM D 350
11BC2SOFTWAREGLU D:122 , GLY D:123 , SER D:126 , HEM D:350 , HOH D:2083 , HOH D:2084BINDING SITE FOR RESIDUE MG D 353
12BC3SOFTWAREALA D:77 , GLU D:196 , PHE D:199 , HEM D:350 , HOH D:2193BINDING SITE FOR RESIDUE ACT D1327
13BC4SOFTWAREARG C:97 , THR C:99 , ARG C:100 , HOH C:2092 , HOH C:2094BINDING SITE FOR RESIDUE SO4 C1330
14BC5SOFTWAREARG A:97 , THR A:99 , ARG A:100 , HOH A:2034 , HOH A:2096BINDING SITE FOR RESIDUE SO4 A1328
15BC6SOFTWAREARG B:97 , THR B:99 , ARG B:100BINDING SITE FOR RESIDUE SO4 B1329
16BC7SOFTWAREARG C:97 , HIS C:138 , HOH C:2039 , HOH C:2290BINDING SITE FOR RESIDUE SO4 C1331
17BC8SOFTWAREARG A:97 , HOH A:2035 , HOH A:2039 , HOH A:2324 , HOH A:2325BINDING SITE FOR RESIDUE SO4 A1329
18BC9SOFTWARETYR A:151 , ARG A:154 , LYS A:171BINDING SITE FOR RESIDUE SO4 A1330
19CC1SOFTWAREARG B:97 , HIS B:138 , HOH B:2369BINDING SITE FOR RESIDUE SO4 B1330
20CC2SOFTWARETHR D:99 , ARG D:100 , HOH D:2064 , HOH D:2194 , HOH D:2195BINDING SITE FOR RESIDUE SO4 D1328
21CC3SOFTWARETHR A:163 , NAG A:371 , NAG A:372 , HOH A:2156 , THR C:276 , PRO C:277 , CYS C:278 , LEU C:279BINDING SITE FOR RESIDUE SO4 C1332
22CC4SOFTWARETHR B:163 , NAG B:371 , NAG B:372 , HOH B:2196 , HOH B:2351 , THR D:276 , PRO D:277 , CYS D:278 , LEU D:279BINDING SITE FOR RESIDUE SO4 D1329
23CC5SOFTWAREASN C:141 , GLU C:142 , THR C:143 , NAG C:361 , HOH C:2148 , HOH C:2291BINDING SITE FOR RESIDUE SO4 C1333
24CC6SOFTWARETHR B:276 , PRO B:277 , CYS B:278 , LEU B:279 , HOH B:2289 , THR D:163 , NAG D:371 , NAG D:372BINDING SITE FOR RESIDUE SO4 B1331
25CC7SOFTWAREASN B:51 , VAL B:53 , HOH B:2125 , ARG C:100 , LEU C:101 , GLY C:103BINDING SITE FOR RESIDUE ACT C1334
26CC8SOFTWARETHR A:276 , PRO A:277 , CYS A:278 , LEU A:279 , HOH A:2258 , HOH A:2326 , THR C:163 , NAG C:371 , NAG C:372BINDING SITE FOR RESIDUE SO4 A1331
27CC9SOFTWAREASN A:11 , SER A:13 , LYS A:15 , HOH A:2012 , HOH A:2321 , HOH A:2322 , GLU C:10BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 11 RESIDUES 411 TO 412
28DC1SOFTWAREPHE A:133 , PHE A:134 , ASN A:141 , THR A:179 , PRO A:181 , HOH A:2131 , HOH A:2302 , HOH A:2304 , HOH A:2307BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 141 RESIDUES 361 TO 366
29DC2SOFTWAREPHE A:155 , GLY A:156 , GLY A:157 , ASN A:161 , THR A:163 , GLN A:213 , HOH A:2308 , CYS C:278 , LEU C:279 , GLU C:282 , ALA C:317 , CYS C:319 , SO4 C:1332BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 161 RESIDUES 371 TO 375
30DC3SOFTWAREPHE A:133 , ASN A:182 , HOH A:2311 , THR D:266 , VAL D:267 , HOH D:2147BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 182 RESIDUES 381 TO 382
31DC4SOFTWAREASN A:286 , LYS A:290 , PRO A:324 , GLY A:326 , HOH A:2262 , HOH A:2301 , HOH A:2313 , HOH A:2314 , HOH A:2315 , HOH A:2317 , HOH A:2318 , HOH A:2319 , HOH A:2320 , GLU D:142 , PHE D:145 , GLU D:146 , VAL D:149 , ASP D:150 , ASN D:153 , ARG D:154 , MET D:216 , ASP D:217 , ARG D:220BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 286 RESIDUES 391 TO 398
32DC5SOFTWAREASN B:11 , ALA B:14 , HOH B:2366BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 11 RESIDUES 411 TO 412
33DC6SOFTWAREPHE B:133 , PHE B:134 , ASN B:141 , LEU B:144 , THR B:179 , HOH B:2168 , HOH B:2175 , HOH B:2346 , HOH B:2347 , HOH B:2348 , HOH B:2349BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 141 RESIDUES 361 TO 365
34DC7SOFTWAREPHE B:155 , GLY B:156 , GLY B:157 , ASN B:161 , THR B:163 , GLN B:213 , HOH B:2190 , HOH B:2191 , HOH B:2236 , HOH B:2350 , HOH B:2351 , CYS D:278 , GLU D:282 , ALA D:317 , CYS D:319 , SO4 D:1329BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 161 RESIDUES 371 TO 372
35DC8SOFTWAREPHE B:133 , ASN B:182 , HOH B:2166 , HOH B:2352 , HOH B:2355 , HOH B:2356BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 182 RESIDUES 381 TO 382
36DC9SOFTWAREASN B:286 , LYS B:290 , PRO B:324 , GLY B:326 , HOH B:2295 , HOH B:2341 , HOH B:2342 , HOH B:2357 , HOH B:2358 , HOH B:2359 , HOH B:2360 , HOH B:2361 , HOH B:2362 , HOH B:2363 , HOH B:2364 , HOH B:2365 , GLU C:142 , GLU C:146 , VAL C:149 , ASP C:150 , ASN C:153 , MET C:216 , ASP C:217 , ARG C:220BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 286 RESIDUES 391 TO 398
37EC1SOFTWAREASN C:11 , ALA C:14 , HOH C:2288BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 11 RESIDUES 411 TO 412
38EC2SOFTWAREASN C:141 , SO4 C:1333 , HOH C:2284BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 141 RESIDUES 361 TO 363
39EC3SOFTWARECYS A:278 , GLU A:282 , ALA A:317 , CYS A:319 , SO4 A:1331 , HOH A:2294 , PHE C:155 , GLY C:156 , GLY C:157 , ASN C:161 , THR C:163 , GLN C:213 , HOH C:2153BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 161 RESIDUES 371 TO 372
40EC4SOFTWAREPHE C:133 , ASN C:182 , HOH C:2286BINDING SITE FOR MONO-SACCHARIDE NAG C 381 BOUND TO ASN C 182
41EC5SOFTWAREASN C:286 , LYS C:290 , PHE C:323 , PRO C:324 , HOH C:2237 , HOH C:2240 , HOH C:2280 , HOH C:2287BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 286 RESIDUES 391 TO 392
42EC6SOFTWAREGLU B:10 , ASN D:11 , SER D:13 , ALA D:14 , LYS D:15BINDING SITE FOR MONO-SACCHARIDE NAG D 411 BOUND TO ASN D 11
43EC7SOFTWAREASN D:141 , HOH D:2190BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 141 RESIDUES 361 TO 362
44EC8SOFTWARECYS B:278 , GLU B:282 , ALA B:317 , CYS B:319 , SO4 B:1331 , HOH B:2335 , PHE D:155 , GLY D:156 , ASN D:161 , THR D:163 , GLN D:213 , HOH D:2098BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 161 RESIDUES 371 TO 373
45EC9SOFTWAREASN D:182BINDING SITE FOR MONO-SACCHARIDE NAG D 381 BOUND TO ASN D 182
46FC1SOFTWAREASN D:286 , LYS D:290 , PHE D:323 , PRO D:324 , HOH D:2189BINDING SITE FOR MONO-SACCHARIDE NAG D 391 BOUND TO ASN D 286

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:278 -A:319
2B:278 -B:319
3C:278 -C:319
4D:278 -D:319

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Pro A:108 -Pro A:109
2Pro B:108 -Pro B:109
3Pro C:108 -Pro C:109
4Pro D:108 -Pro D:109

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YP1)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HEME_HALOPEROXIDASEPS51405 Heme haloperoxidase family profile.APO1_AGRAE63-291
 
 
 		  4A:20-248
B:20-248
C:20-248
D:20-248
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HEME_HALOPEROXIDASEPS51405 Heme haloperoxidase family profile.APO1_AGRAE63-291
 
 
 		  2A:20-248
-
C:20-248
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HEME_HALOPEROXIDASEPS51405 Heme haloperoxidase family profile.APO1_AGRAE63-291
 
 
 		  2-
B:20-248
-
D:20-248

(-) Exons   (0, 0)

(no "Exon" information available for 2YP1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:323
 aligned with APO1_AGRAE | B9W4V6 from UniProtKB/Swiss-Prot  Length:371

    Alignment length:323
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366   
           APO1_AGRAE    47 LPPGPLENSSAKLVNDEAHPWKPLRPGDIRGPCPGLNTLASHGYLPRNGVATPVQIINAVQEGLNFDNQAAVFATYAAHLVDGNLITDLLSIGRKTRLTGPDPPPPASVGGLNEHGTFEGDASMTRGDAFFGNNHDFNETLFEQLVDYSNRFGGGKYNLTVAGELRFKRIQDSIATNPNFSFVDFRFFTAYGETTFPANLFVDGRRDDGQLDMDAARSFFQFSRMPDDFFRAPSPRSGTGVEVVIQAHPMQPGRNVGKINSYTVDPTSSDFSTPCLMYEKFVNITVKSLYPNPTVQLRKALNTNLDFFFQGVAAGCTQVFPYG 369
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................hhhhhhhhh........eehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh......ee....hhhhh...........................hhhhh.....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhh.hhhhhhh..........hhhhhhhhhhhh................hhhhhhhhh....ee........ee........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------HEME_HALOPEROXIDASE  PDB: A:20-248 UniProt: 63-291                                                                                                                                                                                   ------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yp1 A   4 LPPGPLENSSAKLVNDEAHPWKPLRPGDIRGPCPGLNTLASHGYLPRNGVATPVQIINAVQEGLNFDNQAAVFATYAAHLVDGNLITDLLSIGRKTRLTGPDPPPPASVGGLNEHGTFEGDASMTRGDAFFGNNHDFNETLFEQLVDYSNRFGGGKYNLTVAGELRFKRIQDSIATNPNFSFVDFRFFTAYGETTFPANLFVDGRRDDGQLDMDAARSFFQFSRMPDDFFRAPSPRSGTGVEVVIQAHPMQPGRNVGKINSYTVDPTSSDFSTPCLMYEKFVNITVKSLYPNPTVQLRKALNTNLDFFFQGVAAGCTQVFPYG 326
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323   


Chain B from PDB  Type:PROTEIN  Length:324
 aligned with APO1_AGRAE | B9W4V6 from UniProtKB/Swiss-Prot  Length:371

    Alignment length:324
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366    
           APO1_AGRAE    47 LPPGPLENSSAKLVNDEAHPWKPLRPGDIRGPCPGLNTLASHGYLPRNGVATPVQIINAVQEGLNFDNQAAVFATYAAHLVDGNLITDLLSIGRKTRLTGPDPPPPASVGGLNEHGTFEGDASMTRGDAFFGNNHDFNETLFEQLVDYSNRFGGGKYNLTVAGELRFKRIQDSIATNPNFSFVDFRFFTAYGETTFPANLFVDGRRDDGQLDMDAARSFFQFSRMPDDFFRAPSPRSGTGVEVVIQAHPMQPGRNVGKINSYTVDPTSSDFSTPCLMYEKFVNITVKSLYPNPTVQLRKALNTNLDFFFQGVAAGCTQVFPYGR 370
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................................hhhhhhhhhh.......eehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh......ee....hhhhh...........................hhhhh.....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh................hhhhhhhhh....ee........ee........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------HEME_HALOPEROXIDASE  PDB: B:20-248 UniProt: 63-291                                                                                                                                                                                   ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2yp1 B   4 LPPGPLENSSAKLVNDEAHPWKPLRPGDIRGPCPGLNTLASHGYLPRNGVATPVQIINAVQEGLNFDNQAAVFATYAAHLVDGNLITDLLSIGRKTRLTGPDPPPPASVGGLNEHGTFEGDASMTRGDAFFGNNHDFNETLFEQLVDYSNRFGGGKYNLTVAGELRFKRIQDSIATNPNFSFVDFRFFTAYGETTFPANLFVDGRRDDGQLDMDAARSFFQFSRMPDDFFRAPSPRSGTGVEVVIQAHPMQPGRNVGKINSYTVDPTSSDFSTPCLMYEKFVNITVKSLYPNPTVQLRKALNTNLDFFFQGVAAGCTQVFPYGR 327
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323    


Chain C from PDB  Type:PROTEIN  Length:325
 aligned with APO1_AGRAE | B9W4V6 from UniProtKB/Swiss-Prot  Length:371

    Alignment length:325
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366     
           APO1_AGRAE    47 LPPGPLENSSAKLVNDEAHPWKPLRPGDIRGPCPGLNTLASHGYLPRNGVATPVQIINAVQEGLNFDNQAAVFATYAAHLVDGNLITDLLSIGRKTRLTGPDPPPPASVGGLNEHGTFEGDASMTRGDAFFGNNHDFNETLFEQLVDYSNRFGGGKYNLTVAGELRFKRIQDSIATNPNFSFVDFRFFTAYGETTFPANLFVDGRRDDGQLDMDAARSFFQFSRMPDDFFRAPSPRSGTGVEVVIQAHPMQPGRNVGKINSYTVDPTSSDFSTPCLMYEKFVNITVKSLYPNPTVQLRKALNTNLDFFFQGVAAGCTQVFPYGRD 371
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................hhhhhhhhhh.......eehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh......ee....hhhhh...........................hhhhh.....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh................hhhhhhhhh....ee........ee........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------HEME_HALOPEROXIDASE  PDB: C:20-248 UniProt: 63-291                                                                                                                                                                                   -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yp1 C   4 LPPGPLENSSAKLVNDEAHPWKPLRPGDIRGPCPGLNTLASHGYLPRNGVATPVQIINAVQEGLNFDNQAAVFATYAAHLVDGNLITDLLSIGRKTRLTGPDPPPPASVGGLNEHGTFEGDASMTRGDAFFGNNHDFNETLFEQLVDYSNRFGGGKYNLTVAGELRFKRIQDSIATNPNFSFVDFRFFTAYGETTFPANLFVDGRRDDGQLDMDAARSFFQFSRMPDDFFRAPSPRSGTGVEVVIQAHPMQPGRNVGKINSYTVDPTSSDFSTPCLMYEKFVNITVKSLYPNPTVQLRKALNTNLDFFFQGVAAGCTQVFPYGRD 328
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323     


Chain D from PDB  Type:PROTEIN  Length:323
 aligned with APO1_AGRAE | B9W4V6 from UniProtKB/Swiss-Prot  Length:371

    Alignment length:323
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366   
           APO1_AGRAE    47 LPPGPLENSSAKLVNDEAHPWKPLRPGDIRGPCPGLNTLASHGYLPRNGVATPVQIINAVQEGLNFDNQAAVFATYAAHLVDGNLITDLLSIGRKTRLTGPDPPPPASVGGLNEHGTFEGDASMTRGDAFFGNNHDFNETLFEQLVDYSNRFGGGKYNLTVAGELRFKRIQDSIATNPNFSFVDFRFFTAYGETTFPANLFVDGRRDDGQLDMDAARSFFQFSRMPDDFFRAPSPRSGTGVEVVIQAHPMQPGRNVGKINSYTVDPTSSDFSTPCLMYEKFVNITVKSLYPNPTVQLRKALNTNLDFFFQGVAAGCTQVFPYG 369
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................hhhhhhhhhh.......eehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh......ee....hhhhh...........................hhhhh.....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhh.hhhhhhh..........hhhhhhhhhh..................hhhhhhhhh....ee........ee........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------HEME_HALOPEROXIDASE  PDB: D:20-248 UniProt: 63-291                                                                                                                                                                                   ------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yp1 D   4 LPPGPLENSSAKLVNDEAHPWKPLRPGDIRGPCPGLNTLASHGYLPRNGVATPVQIINAVQEGLNFDNQAAVFATYAAHLVDGNLITDLLSIGRKTRLTGPDPPPPASVGGLNEHGTFEGDASMTRGDAFFGNNHDFNETLFEQLVDYSNRFGGGKYNLTVAGELRFKRIQDSIATNPNFSFVDFRFFTAYGETTFPANLFVDGRRDDGQLDMDAARSFFQFSRMPDDFFRAPSPRSGTGVEVVIQAHPMQPGRNVGKINSYTVDPTSSDFSTPCLMYEKFVNITVKSLYPNPTVQLRKALNTNLDFFFQGVAAGCTQVFPYG 326
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323
   Legend:   → Mismatch (orange background)
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2YP1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YP1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2YP1)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (APO1_AGRAE | B9W4V6)
molecular function
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0004601    peroxidase activity    Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
biological process
    GO:0098869    cellular oxidant detoxification    Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
    GO:0042744    hydrogen peroxide catabolic process    The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        APO1_AGRAE | B9W4V6: 2yor

(-) Related Entries Specified in the PDB File

2yor CRYSTALLIZATION OF A 45 KDA PEROXYGENASE- PEROXIDASE FROM THE MUSHROOM AGROCYBE AEGERITA AND STRUCTURE DETERMINATION BY SAD UTILIZING ONLY THE HAEM IRON