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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTALLIZATION OF A 45 KDA PEROXYGENASE- PEROXIDASE FROM TH AGROCYBE AEGERITA AND STRUCTURE DETERMINATION BY SAD UTILIZ THE HAEM IRON
Keywords OXIDOREDUCTASE, PEROXIDASE/PEROXYGENASE, UNSPECIFIC/AROMATIC PEROXYGENASE, HEME, GLYCOPROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2YP1     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   AROMATIC PEROXYGENASE  A 323 2501 0
2  Protein   AROMATIC PEROXYGENASE  B 324 2512 0
3  Protein   AROMATIC PEROXYGENASE  C 325 2521 0
4  Protein   AROMATIC PEROXYGENASE  D 323 2501 0
5  Ligand    E 6 0 72
6  Ligand    F 5 0 61
7  Ligand    G 2 0 28
8  Ligand    H 8 0 94
9  Ligand    I 2 0 28
10  Ligand    J 5 0 61
11  Ligand    K 2 0 28
12  Ligand    L 2 0 28
13  Ligand    M 8 0 94
14  Ligand    N 2 0 28
15  Ligand    O 3 0 39
16  Ligand    P 2 0 28
17  Ligand    Q 2 0 28
18  Ligand    R 2 0 28
19  Ligand    S 2 0 28
20  Ligand    T 3 0 39
21  Ligand   AROMATIC PEROXYGENASE  A 7 0 68
22  Ligand   AROMATIC PEROXYGENASE  B 6 0 63
23  Ligand   AROMATIC PEROXYGENASE  C 9 0 86
24  Ligand   AROMATIC PEROXYGENASE  D 8 0 100
25 Water     1185 0 1185
total       2566 10035 2214
Proteins
Unit 1 LEU4 PRO5 PRO6 GLY7 PRO8 LEU9 GLU10 ASN11 SER12 SER13 ALA14 LYS15 LEU16 VAL17 ASN18 ASP19 GLU20 ALA21 HIS22 PRO23 TRP24 LYS25 PRO26 LEU27 ARG28 PRO29 GLY30 ASP31 ILE32 ARG33 GLY34 PRO35 CYS36 PRO37 GLY38 LEU39 ASN40 THR41 LEU42 ALA43 SER44 HIS45 GLY46 TYR47 LEU48 PRO49 ARG50 ASN51 GLY52 VAL53 ALA54 THR55 PRO56 VAL57 GLN58 ILE59 ILE60 ASN61 ALA62 VAL63 GLN64 GLU65 GLY66 LEU67 ASN68 PHE69 ASP70 ASN71 GLN72 ALA73 ALA74 VAL75 PHE76 ALA77 THR78 TYR79 ALA80 ALA81 HIS82 LEU83 VAL84 ASP85 GLY86 ASN87 LEU88 ILE89 THR90 ASP91 LEU92 LEU93 SER94 ILE95 GLY96 ARG97 LYS98 THR99 ARG100 LEU101 THR102 GLY103 PRO104 ASP105 PRO106 PRO107 PRO108 PRO109 ALA110 SER111 VAL112 GLY113 GLY114 LEU115 ASN116 GLU117 HIS118 GLY119 THR120 PHE121 GLU122 GLY123 ASP124 ALA125 SER126 MET127 THR128 ARG129 GLY130 ASP131 ALA132 PHE133 PHE134 GLY135 ASN136 ASN137 HIS138 ASP139 PHE140 ASN141 GLU142 THR143 LEU144 PHE145 GLU146 GLN147 LEU148 VAL149 ASP150 TYR151 SER152 ASN153 ARG154 PHE155 GLY156 GLY157 GLY158 LYS159 TYR160 ASN161 LEU162 THR163 VAL164 ALA165 GLY166 GLU167 LEU168 ARG169 PHE170 LYS171 ARG172 ILE173 GLN174 ASP175 SER176 ILE177 ALA178 THR179 ASN180 PRO181 ASN182 PHE183 SER184 PHE185 VAL186 ASP187 PHE188 ARG189 PHE190 PHE191 THR192 ALA193 TYR194 GLY195 GLU196 THR197 THR198 PHE199 PRO200 ALA201 ASN202 LEU203 PHE204 VAL205 ASP206 GLY207 ARG208 ARG209 ASP210 ASP211 GLY212 GLN213 LEU214 ASP215 MET216 ASP217 ALA218 ALA219 ARG220 SER221 PHE222 PHE223 GLN224 PHE225 SER226 ARG227 MET228 PRO229 ASP230 ASP231 PHE232 PHE233 ARG234 ALA235 PRO236 SER237 PRO238 ARG239 SER240 GLY241 THR242 GLY243 VAL244 GLU245 VAL246 VAL247 ILE248 GLN249 ALA250 HIS251 PRO252 MET253 GLN254 PRO255 GLY256 ARG257 ASN258 VAL259 GLY260 LYS261 ILE262 ASN263 SER264 TYR265 THR266 VAL267 ASP268 PRO269 THR270 SER271 SER272 ASP273 PHE274 SER275 THR276 PRO277 CYS278 LEU279 MET280 TYR281 GLU282 LYS283 PHE284 VAL285 ASN286 ILE287 THR288 VAL289 LYS290 SER291 LEU292 TYR293 PRO294 ASN295 PRO296 THR297 VAL298 GLN299 LEU300 ARG301 LYS302 ALA303 LEU304 ASN305 THR306 ASN307 LEU308 ASP309 PHE310 PHE311 PHE312 GLN313 GLY314 VAL315 ALA316 ALA317 GLY318 CYS319 THR320 GLN321 VAL322 PHE323 PRO324 TYR325 GLY326
Unit 2 LEU4 PRO5 PRO6 GLY7 PRO8 LEU9 GLU10 ASN11 SER12 SER13 ALA14 LYS15 LEU16 VAL17 ASN18 ASP19 GLU20 ALA21 HIS22 PRO23 TRP24 LYS25 PRO26 LEU27 ARG28 PRO29 GLY30 ASP31 ILE32 ARG33 GLY34 PRO35 CYS36 PRO37 GLY38 LEU39 ASN40 THR41 LEU42 ALA43 SER44 HIS45 GLY46 TYR47 LEU48 PRO49 ARG50 ASN51 GLY52 VAL53 ALA54 THR55 PRO56 VAL57 GLN58 ILE59 ILE60 ASN61 ALA62 VAL63 GLN64 GLU65 GLY66 LEU67 ASN68 PHE69 ASP70 ASN71 GLN72 ALA73 ALA74 VAL75 PHE76 ALA77 THR78 TYR79 ALA80 ALA81 HIS82 LEU83 VAL84 ASP85 GLY86 ASN87 LEU88 ILE89 THR90 ASP91 LEU92 LEU93 SER94 ILE95 GLY96 ARG97 LYS98 THR99 ARG100 LEU101 THR102 GLY103 PRO104 ASP105 PRO106 PRO107 PRO108 PRO109 ALA110 SER111 VAL112 GLY113 GLY114 LEU115 ASN116 GLU117 HIS118 GLY119 THR120 PHE121 GLU122 GLY123 ASP124 ALA125 SER126 MET127 THR128 ARG129 GLY130 ASP131 ALA132 PHE133 PHE134 GLY135 ASN136 ASN137 HIS138 ASP139 PHE140 ASN141 GLU142 THR143 LEU144 PHE145 GLU146 GLN147 LEU148 VAL149 ASP150 TYR151 SER152 ASN153 ARG154 PHE155 GLY156 GLY157 GLY158 LYS159 TYR160 ASN161 LEU162 THR163 VAL164 ALA165 GLY166 GLU167 LEU168 ARG169 PHE170 LYS171 ARG172 ILE173 GLN174 ASP175 SER176 ILE177 ALA178 THR179 ASN180 PRO181 ASN182 PHE183 SER184 PHE185 VAL186 ASP187 PHE188 ARG189 PHE190 PHE191 THR192 ALA193 TYR194 GLY195 GLU196 THR197 THR198 PHE199 PRO200 ALA201 ASN202 LEU203 PHE204 VAL205 ASP206 GLY207 ARG208 ARG209 ASP210 ASP211 GLY212 GLN213 LEU214 ASP215 MET216 ASP217 ALA218 ALA219 ARG220 SER221 PHE222 PHE223 GLN224 PHE225 SER226 ARG227 MET228 PRO229 ASP230 ASP231 PHE232 PHE233 ARG234 ALA235 PRO236 SER237 PRO238 ARG239 SER240 GLY241 THR242 GLY243 VAL244 GLU245 VAL246 VAL247 ILE248 GLN249 ALA250 HIS251 PRO252 MET253 GLN254 PRO255 GLY256 ARG257 ASN258 VAL259 GLY260 LYS261 ILE262 ASN263 SER264 TYR265 THR266 VAL267 ASP268 PRO269 THR270 SER271 SER272 ASP273 PHE274 SER275 THR276 PRO277 CYS278 LEU279 MET280 TYR281 GLU282 LYS283 PHE284 VAL285 ASN286 ILE287 THR288 VAL289 LYS290 SER291 LEU292 TYR293 PRO294 ASN295 PRO296 THR297 VAL298 GLN299 LEU300 ARG301 LYS302 ALA303 LEU304 ASN305 THR306 ASN307 LEU308 ASP309 PHE310 PHE311 PHE312 GLN313 GLY314 VAL315 ALA316 ALA317 GLY318 CYS319 THR320 GLN321 VAL322 PHE323 PRO324 TYR325 GLY326 ARG327
Unit 3 LEU4 PRO5 PRO6 GLY7 PRO8 LEU9 GLU10 ASN11 SER12 SER13 ALA14 LYS15 LEU16 VAL17 ASN18 ASP19 GLU20 ALA21 HIS22 PRO23 TRP24 LYS25 PRO26 LEU27 ARG28 PRO29 GLY30 ASP31 ILE32 ARG33 GLY34 PRO35 CYS36 PRO37 GLY38 LEU39 ASN40 THR41 LEU42 ALA43 SER44 HIS45 GLY46 TYR47 LEU48 PRO49 ARG50 ASN51 GLY52 VAL53 ALA54 THR55 PRO56 VAL57 GLN58 ILE59 ILE60 ASN61 ALA62 VAL63 GLN64 GLU65 GLY66 LEU67 ASN68 PHE69 ASP70 ASN71 GLN72 ALA73 ALA74 VAL75 PHE76 ALA77 THR78 TYR79 ALA80 ALA81 HIS82 LEU83 VAL84 ASP85 GLY86 ASN87 LEU88 ILE89 THR90 ASP91 LEU92 LEU93 SER94 ILE95 GLY96 ARG97 LYS98 THR99 ARG100 LEU101 THR102 GLY103 PRO104 ASP105 PRO106 PRO107 PRO108 PRO109 ALA110 SER111 VAL112 GLY113 GLY114 LEU115 ASN116 GLU117 HIS118 GLY119 THR120 PHE121 GLU122 GLY123 ASP124 ALA125 SER126 MET127 THR128 ARG129 GLY130 ASP131 ALA132 PHE133 PHE134 GLY135 ASN136 ASN137 HIS138 ASP139 PHE140 ASN141 GLU142 THR143 LEU144 PHE145 GLU146 GLN147 LEU148 VAL149 ASP150 TYR151 SER152 ASN153 ARG154 PHE155 GLY156 GLY157 GLY158 LYS159 TYR160 ASN161 LEU162 THR163 VAL164 ALA165 GLY166 GLU167 LEU168 ARG169 PHE170 LYS171 ARG172 ILE173 GLN174 ASP175 SER176 ILE177 ALA178 THR179 ASN180 PRO181 ASN182 PHE183 SER184 PHE185 VAL186 ASP187 PHE188 ARG189 PHE190 PHE191 THR192 ALA193 TYR194 GLY195 GLU196 THR197 THR198 PHE199 PRO200 ALA201 ASN202 LEU203 PHE204 VAL205 ASP206 GLY207 ARG208 ARG209 ASP210 ASP211 GLY212 GLN213 LEU214 ASP215 MET216 ASP217 ALA218 ALA219 ARG220 SER221 PHE222 PHE223 GLN224 PHE225 SER226 ARG227 MET228 PRO229 ASP230 ASP231 PHE232 PHE233 ARG234 ALA235 PRO236 SER237 PRO238 ARG239 SER240 GLY241 THR242 GLY243 VAL244 GLU245 VAL246 VAL247 ILE248 GLN249 ALA250 HIS251 PRO252 MET253 GLN254 PRO255 GLY256 ARG257 ASN258 VAL259 GLY260 LYS261 ILE262 ASN263 SER264 TYR265 THR266 VAL267 ASP268 PRO269 THR270 SER271 SER272 ASP273 PHE274 SER275 THR276 PRO277 CYS278 LEU279 MET280 TYR281 GLU282 LYS283 PHE284 VAL285 ASN286 ILE287 THR288 VAL289 LYS290 SER291 LEU292 TYR293 PRO294 ASN295 PRO296 THR297 VAL298 GLN299 LEU300 ARG301 LYS302 ALA303 LEU304 ASN305 THR306 ASN307 LEU308 ASP309 PHE310 PHE311 PHE312 GLN313 GLY314 VAL315 ALA316 ALA317 GLY318 CYS319 THR320 GLN321 VAL322 PHE323 PRO324 TYR325 GLY326 ARG327 ASP328
Unit 4 LEU4 PRO5 PRO6 GLY7 PRO8 LEU9 GLU10 ASN11 SER12 SER13 ALA14 LYS15 LEU16 VAL17 ASN18 ASP19 GLU20 ALA21 HIS22 PRO23 TRP24 LYS25 PRO26 LEU27 ARG28 PRO29 GLY30 ASP31 ILE32 ARG33 GLY34 PRO35 CYS36 PRO37 GLY38 LEU39 ASN40 THR41 LEU42 ALA43 SER44 HIS45 GLY46 TYR47 LEU48 PRO49 ARG50 ASN51 GLY52 VAL53 ALA54 THR55 PRO56 VAL57 GLN58 ILE59 ILE60 ASN61 ALA62 VAL63 GLN64 GLU65 GLY66 LEU67 ASN68 PHE69 ASP70 ASN71 GLN72 ALA73 ALA74 VAL75 PHE76 ALA77 THR78 TYR79 ALA80 ALA81 HIS82 LEU83 VAL84 ASP85 GLY86 ASN87 LEU88 ILE89 THR90 ASP91 LEU92 LEU93 SER94 ILE95 GLY96 ARG97 LYS98 THR99 ARG100 LEU101 THR102 GLY103 PRO104 ASP105 PRO106 PRO107 PRO108 PRO109 ALA110 SER111 VAL112 GLY113 GLY114 LEU115 ASN116 GLU117 HIS118 GLY119 THR120 PHE121 GLU122 GLY123 ASP124 ALA125 SER126 MET127 THR128 ARG129 GLY130 ASP131 ALA132 PHE133 PHE134 GLY135 ASN136 ASN137 HIS138 ASP139 PHE140 ASN141 GLU142 THR143 LEU144 PHE145 GLU146 GLN147 LEU148 VAL149 ASP150 TYR151 SER152 ASN153 ARG154 PHE155 GLY156 GLY157 GLY158 LYS159 TYR160 ASN161 LEU162 THR163 VAL164 ALA165 GLY166 GLU167 LEU168 ARG169 PHE170 LYS171 ARG172 ILE173 GLN174 ASP175 SER176 ILE177 ALA178 THR179 ASN180 PRO181 ASN182 PHE183 SER184 PHE185 VAL186 ASP187 PHE188 ARG189 PHE190 PHE191 THR192 ALA193 TYR194 GLY195 GLU196 THR197 THR198 PHE199 PRO200 ALA201 ASN202 LEU203 PHE204 VAL205 ASP206 GLY207 ARG208 ARG209 ASP210 ASP211 GLY212 GLN213 LEU214 ASP215 MET216 ASP217 ALA218 ALA219 ARG220 SER221 PHE222 PHE223 GLN224 PHE225 SER226 ARG227 MET228 PRO229 ASP230 ASP231 PHE232 PHE233 ARG234 ALA235 PRO236 SER237 PRO238 ARG239 SER240 GLY241 THR242 GLY243 VAL244 GLU245 VAL246 VAL247 ILE248 GLN249 ALA250 HIS251 PRO252 MET253 GLN254 PRO255 GLY256 ARG257 ASN258 VAL259 GLY260 LYS261 ILE262 ASN263 SER264 TYR265 THR266 VAL267 ASP268 PRO269 THR270 SER271 SER272 ASP273 PHE274 SER275 THR276 PRO277 CYS278 LEU279 MET280 TYR281 GLU282 LYS283 PHE284 VAL285 ASN286 ILE287 THR288 VAL289 LYS290 SER291 LEU292 TYR293 PRO294 ASN295 PRO296 THR297 VAL298 GLN299 LEU300 ARG301 LYS302 ALA303 LEU304 ASN305 THR306 ASN307 LEU308 ASP309 PHE310 PHE311 PHE312 GLN313 GLY314 VAL315 ALA316 ALA317 GLY318 CYS319 THR320 GLN321 VAL322 PHE323 PRO324 TYR325 GLY326
Ligands
Unit 5 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6
Unit 6 NAG1 NAG2 BMA3 MAN4 MAN5
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 MAN8
Unit 9 NAG1 NAG2
Unit 10 NAG1 NAG2 BMA3 MAN4 MAN5
Unit 11 NAG1 NAG2
Unit 12 NAG1 NAG2
Unit 13 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 MAN8
Unit 14 NAG1 NAG2
Unit 15 NAG1 NAG2 BMA3
Unit 16 NAG1 NAG2
Unit 17 NAG1 NAG2
Unit 18 NAG1 NAG2
Unit 19 NAG1 NAG2
Unit 20 NAG1 NAG2 BMA3
Unit 21 HEM350 MG353 ACT1327 SO41328 SO41329 SO41330 SO41331
Unit 22 HEM350 MG353 ACT1328 SO41329 SO41330 SO41331
Unit 23 HEM350 MG353 NAG381 ACT1329 SO41330 SO41331 SO41332 SO41333 ACT1334
Unit 24 HEM350 MG353 NAG381 NAG391 NAG411 ACT1327 SO41328 SO41329
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany