2YD7 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR PROTEIN TYROSINE PHOSPHATASE DELTA

Authors :   C. H. Coles, Y. Shen, A. P. Tenney, C. Siebold, G. C. Sutton, W. Lu, J. T. Ga E. Y. Jones, J. G. Flanagan, A. R. Aricescu

Date :   17 Mar 11 (Deposition) - 13 Apr 11 (Release) - 04 May 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.98

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. H. Coles, Y. Shen, A. P. Tenney, C. Siebold, G. C. Sutton, W. Lu, J. T. Gallagher, E. Y. Jones, J. G. Flanagan, A. R. Aricescu
Proteoglycan-Specific Molecular Switch For Rptp Sigma Clustering And Neuronal Extension.
Science V. 332 484 2011
PubMed-ID: 21454754 | Reference-DOI: 10.1126/SCIENCE.1200840

Molecule 1 - PTPRD PROTEIN
	Chains	:	A, B
	EC Number	:	3.1.3.48
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Cell Line	:	HEK293T
	Expression System Common	:	HUMAN
	Expression System Taxid	:	9606
	Expression System Vector	:	PHLSEC
	Expression System Vector Type	:	PLASMID
	Fragment	:	IG1-2, RESIDUES 21-220
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	RPTPD, RECEPTOR PROTEIN TYROSINE PHOSPHATASE DELTA

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 3)

No.	Name	Count	Type	Full Name
1	PO4	3	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	PO4	2	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MET A:130 , GLY A:131 , GLN A:133 , ARG B:141 , THR B:142	BINDING SITE FOR RESIDUE PO4 B1221
2	AC2	SOFTWARE	ARG A:141 , THR A:142 , MET B:130 , GLY B:131 , GLN B:133 , HOH B:2064	BINDING SITE FOR RESIDUE PO4 B1222
3	AC3	SOFTWARE	GLU A:93 , ALA A:94 , ARG A:112 , LEU A:113 , THR A:114	BINDING SITE FOR RESIDUE PO4 A1221

Asymmetric Unit

No.	Residues
1	A:45	-	A:98
2	A:147	-	A:201
3	B:45	-	B:98
4	B:147	-	B:201

Asymmetric Unit

No.	Residues
1	Asp A:50	-	Pro A:51
2	Gln A:85	-	Pro A:86
3	Thr A:89	-	Pro A:90
4	Asn A:152	-	Pro A:153
5	Asp B:50	-	Pro B:51
6	Gln B:85	-	Pro B:86
7	Thr B:89	-	Pro B:90
8	Asn B:152	-	Pro B:153

Asymmetric Unit (2, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_035645	R	28	Q	PTPRD_HUMAN	Unclassified	---	A/B	R	28	Q
2	CancerSNP	VAR_PTPRD_HUMAN_CCDS6472_1_01 *	R	28	Q	PTPRD_HUMAN	Disease (Colorectal cancer)	---	A/B	R	28	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_035645	R	28	Q	PTPRD_HUMAN	Unclassified	---	A	R	28	Q
2	CancerSNP	VAR_PTPRD_HUMAN_CCDS6472_1_01 *	R	28	Q	PTPRD_HUMAN	Disease (Colorectal cancer)	---	A	R	28	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_035645	R	28	Q	PTPRD_HUMAN	Unclassified	---	B	R	28	Q
2	CancerSNP	VAR_PTPRD_HUMAN_CCDS6472_1_01 *	R	28	Q	PTPRD_HUMAN	Disease (Colorectal cancer)	---	B	R	28	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2YD7)

Asymmetric Unit (7, 14)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000381196	1	ENSE00001811856	chr9:9938610-9938507	104	PTPRD_HUMAN	-	0	0	-	-
1.2	ENST00000381196	2	ENSE00001948254	chr9:9766851-9766810	42	PTPRD_HUMAN	-	0	0	-	-
1.3	ENST00000381196	3	ENSE00001955782	chr9:9734571-9734533	39	PTPRD_HUMAN	-	0	0	-	-
1.4	ENST00000381196	4	ENSE00001889688	chr9:9574781-9574732	50	PTPRD_HUMAN	-	0	0	-	-
1.6	ENST00000381196	6	ENSE00001817715	chr9:9397482-9397449	34	PTPRD_HUMAN	-	0	0	-	-
1.7	ENST00000381196	7	ENSE00001940698	chr9:9183363-9183304	60	PTPRD_HUMAN	-	0	0	-	-
1.8	ENST00000381196	8	ENSE00001487965	chr9:9018735-9018697	39	PTPRD_HUMAN	-	0	0	-	-
1.10b	ENST00000381196	10b	ENSE00001254389	chr9:8733946-8733780	167	PTPRD_HUMAN	1-22	22	2	A:21-22 B:21-22	2 2
1.11	ENST00000381196	11	ENSE00001172744	chr9:8636844-8636699	146	PTPRD_HUMAN	22-70	49	2	A:22-70 B:22-70	49 49
1.12c	ENST00000381196	12c	ENSE00001172741	chr9:8633458-8633317	142	PTPRD_HUMAN	71-118	48	2	A:71-118 B:71-118	48 48
1.13	ENST00000381196	13	ENSE00001172738	chr9:8528779-8528591	189	PTPRD_HUMAN	118-181	64	2	A:118-181 (gaps) B:118-181 (gaps)	64 64
1.15	ENST00000381196	15	ENSE00001780939	chr9:8527353-8527345	9	PTPRD_HUMAN	181-184	4	2	A:181-184 B:181-184	4 4
1.16	ENST00000381196	16	ENSE00001739974	chr9:8526644-8526627	18	PTPRD_HUMAN	184-190	7	2	A:184-184 B:184-184	1 1
1.17b	ENST00000381196	17b	ENSE00001087346	chr9:8525035-8524925	111	PTPRD_HUMAN	190-227	38	2	A:185-220 B:185-220	36 36
1.18	ENST00000381196	18	ENSE00001662513	chr9:8523524-8523513	12	PTPRD_HUMAN	227-231	5	0	-	-
1.19b	ENST00000381196	19b	ENSE00001087338	chr9:8521546-8521277	270	PTPRD_HUMAN	231-321	91	0	-	-
1.20	ENST00000381196	20	ENSE00001012020	chr9:8518429-8517848	582	PTPRD_HUMAN	321-515	195	0	-	-
1.21	ENST00000381196	21	ENSE00001172713	chr9:8507434-8507301	134	PTPRD_HUMAN	515-559	45	0	-	-
1.22a	ENST00000381196	22a	ENSE00001368106	chr9:8504405-8504261	145	PTPRD_HUMAN	560-608	49	0	-	-
1.23	ENST00000381196	23	ENSE00001012029	chr9:8501059-8500754	306	PTPRD_HUMAN	608-710	103	0	-	-
1.24	ENST00000381196	24	ENSE00001012019	chr9:8499840-8499647	194	PTPRD_HUMAN	710-774	65	0	-	-
1.25	ENST00000381196	25	ENSE00001172700	chr9:8497268-8497242	27	PTPRD_HUMAN	775-783	9	0	-	-
1.26	ENST00000381196	26	ENSE00001012012	chr9:8492979-8492862	118	PTPRD_HUMAN	784-823	40	0	-	-
1.27b	ENST00000381196	27b	ENSE00001012016	chr9:8486349-8485762	588	PTPRD_HUMAN	823-1019	197	0	-	-
1.28b	ENST00000381196	28b	ENSE00001012033	chr9:8485324-8485227	98	PTPRD_HUMAN	1019-1051	33	0	-	-
1.29b	ENST00000381196	29b	ENSE00001012014	chr9:8484378-8484119	260	PTPRD_HUMAN	1052-1138	87	0	-	-
1.30	ENST00000381196	30	ENSE00001172680	chr9:8471085-8470995	91	PTPRD_HUMAN	1138-1168	31	0	-	-
1.31	ENST00000381196	31	ENSE00001012036	chr9:8465675-8465466	210	PTPRD_HUMAN	1169-1238	70	0	-	-
1.32	ENST00000381196	32	ENSE00001012037	chr9:8460571-8460411	161	PTPRD_HUMAN	1239-1292	54	0	-	-
1.34	ENST00000381196	34	ENSE00001172661	chr9:8449837-8449725	113	PTPRD_HUMAN	1292-1330	39	0	-	-
1.36	ENST00000381196	36	ENSE00001172655	chr9:8436689-8436592	98	PTPRD_HUMAN	1330-1362	33	0	-	-
1.37	ENST00000381196	37	ENSE00001012032	chr9:8404660-8404537	124	PTPRD_HUMAN	1363-1404	42	0	-	-
1.38	ENST00000381196	38	ENSE00001172638	chr9:8389407-8389232	176	PTPRD_HUMAN	1404-1462	59	0	-	-
1.39	ENST00000381196	39	ENSE00001012031	chr9:8376726-8376607	120	PTPRD_HUMAN	1463-1502	40	0	-	-
1.40	ENST00000381196	40	ENSE00001012034	chr9:8376090-8375936	155	PTPRD_HUMAN	1503-1554	52	0	-	-
1.41	ENST00000381196	41	ENSE00001172619	chr9:8341978-8341693	286	PTPRD_HUMAN	1554-1649	96	0	-	-
1.42	ENST00000381196	42	ENSE00001172611	chr9:8341268-8341090	179	PTPRD_HUMAN	1650-1709	60	0	-	-
1.43	ENST00000381196	43	ENSE00001012021	chr9:8340469-8340343	127	PTPRD_HUMAN	1709-1751	43	0	-	-
1.44	ENST00000381196	44	ENSE00001656481	chr9:8339047-8338922	126	PTPRD_HUMAN	1752-1793	42	0	-	-
1.45	ENST00000381196	45	ENSE00001707976	chr9:8331736-8331582	155	PTPRD_HUMAN	1794-1845	52	0	-	-
1.46	ENST00000381196	46	ENSE00001012025	chr9:8319966-8319831	136	PTPRD_HUMAN	1845-1890	46	0	-	-
1.47c	ENST00000381196	47c	ENSE00001254378	chr9:8317942-8314246	3697	PTPRD_HUMAN	1891-1912	22	0	-	-
1.49a	ENST00000381196	49a	ENSE00001922875	chr9:10612509-10612398	112	PTPRD_HUMAN	-	0	0	-	-
1.50a	ENST00000381196	50a	ENSE00001820932	chr9:10341062-10340963	100	PTPRD_HUMAN	-	0	0	-	-
1.51	ENST00000381196	51	ENSE00001895238	chr9:10033790-10033718	73	PTPRD_HUMAN	-	0	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:197
 aligned with PTPRD_HUMAN | P23468 from UniProtKB/Swiss-Prot  Length:1912

    Alignment length:206
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220      
          PTPRD_HUMAN    21 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGGTPIRGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 226
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....eeee....eeeeeeeeee...eeeeee..ee.....eeeee.....eeeeee.........eeeeeeeee..eeeeeeeeeeeehhhhh.....eeee....eeee....eeeeeeee.....eeeeee..ee....---..eeeeee..ee------eeee...hhhhheeeeeeeee..eeee...eeeeee Sec.struct. author
             SAPs(SNPs) (1) -------Q------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------Q------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.------------------------------------------------Exon 1.12c  PDB: A:71-118 UniProt: 71-118       --------------------------------------------------------------1.15-----Exon 1.17b  PDB: A:185-220            Transcript 1 (1)
           Transcript 1 (2) -Exon 1.11  PDB: A:22-70 UniProt: 22-70           -----------------------------------------------Exon 1.13  PDB: A:118-181 (gaps) UniProt: 118-181               --1.16   ------------------------------------ Transcript 1 (2)
                 2yd7 A  21 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTS---GRIKQLRSESIG------ALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 220
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160        |-  |    180   |     -|      194       204       214      
                                                                                                                                                                              169 173        184    185

Chain B from PDB  Type:PROTEIN  Length:195
 aligned with PTPRD_HUMAN | P23468 from UniProtKB/Swiss-Prot  Length:1912

    Alignment length:206
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220      
          PTPRD_HUMAN    21 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGGTPIRGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 226
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....eeee....eeeeeeeeee...eeeeee..ee.....eeeeeehhh.eeeeee.........eeeeeeee....eeeeeeeeeeehhhhh.....eeee....eeee....eeeeeeee.....eeeeee..ee...-----.eeeeee..ee------eeee...hhhhheeeeeeeee..eeee...eeeeee Sec.struct. author
             SAPs(SNPs) (1) -------Q------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------Q------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.------------------------------------------------Exon 1.12c  PDB: B:71-118 UniProt: 71-118       --------------------------------------------------------------1.15-----Exon 1.17b  PDB: B:185-220            Transcript 1 (1)
           Transcript 1 (2) -Exon 1.11  PDB: B:22-70 UniProt: 22-70           -----------------------------------------------Exon 1.13  PDB: B:118-181 (gaps) UniProt: 118-181               --1.16   ------------------------------------ Transcript 1 (2)
                 2yd7 B  21 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDT-----RIKQLRSESIG------ALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 220
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       | -   |   180   |     -|      194       204       214      
                                                                                                                                                                             168   174       184    185

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2YD7)

(no "CATH Domain" information available for 2YD7)

(no "Pfam Domain" information available for 2YD7)

Asymmetric Unit(hide GO term definitions)

Chain A,B (PTPRD_HUMAN | P23468)

molecular function
	GO:0050839	cell adhesion molecule binding	Interacting selectively and non-covalently with a cell adhesion molecule.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016791	phosphatase activity	Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
	GO:0004721	phosphoprotein phosphatase activity	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004725	protein tyrosine phosphatase activity	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
	GO:0005102	receptor binding	Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
	GO:0005001	transmembrane receptor protein tyrosine phosphatase activity	Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
biological process
	GO:0007268	chemical synaptic transmission	The vesicular release of classical neurotransmitter molecules from a presynapse, across a chemical synapse, the subsequent activation of neurotransmitter receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse.
	GO:0016311	dephosphorylation	The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
	GO:0007157	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell.
	GO:0030182	neuron differentiation	The process in which a relatively unspecialized cell acquires specialized features of a neuron.
	GO:0035335	peptidyl-tyrosine dephosphorylation	The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine.
	GO:0006796	phosphate-containing compound metabolic process	The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid.
	GO:0050775	positive regulation of dendrite morphogenesis	Any process that activates or increases the frequency, rate or extent of dendrite morphogenesis.
	GO:0097105	presynaptic membrane assembly	The aggregation, arrangement and bonding together of a set of components to form a presynaptic membrane, including any proteins associated with the membrane, but excluding other cellular components. A presynaptic membrane is a specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction.
	GO:0006470	protein dephosphorylation	The process of removing one or more phosphoric residues from a protein.
	GO:0007185	transmembrane receptor protein tyrosine phosphatase signaling pathway	A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses protein tyrosine phosphatase activity, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
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	Cis Peptide Bonds
		Asn A:152 - Pro A:153	[ RasMol ]
		Asn B:152 - Pro B:153	[ RasMol ]
		Asp A:50 - Pro A:51	[ RasMol ]
		Asp B:50 - Pro B:51	[ RasMol ]
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		Gln B:85 - Pro B:86	[ RasMol ]
		Thr A:89 - Pro A:90	[ RasMol ]
		Thr B:89 - Pro B:90	[ RasMol ]

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Access by PDB/NDB ID
	2yd7
		Family and Domain Information	:	ProDom \| SYSTERS
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Access by UniProt ID/Accession number
	PTPRD_HUMAN \| P23468
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	3.1.3.48
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		Pathway	:	KEGG \| MetaCyc

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
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	PTPRD_HUMAN \| P23468
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	PTPRD_HUMAN \| P23468	:	1x5z 2dlh 2yd6 4rca

2yd1	CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF DROSOPHILA RECEPTOR PROTEIN TYROSINE PHOSPHATASE DLAR
2yd2	CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR PROTEIN TYROSINE PHOSPHATASE SIGMA
2yd3	CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR PROTEIN TYROSINE PHOSPHATASE SIGMA
2yd4	CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF CHICKEN RECEPTOR PROTEIN TYROSINE PHOSPHATASE SIGMA
2yd5	CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR PROTEIN TYROSINE PHOSPHATASE LAR
2yd6	CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR PROTEIN TYROSINE PHOSPHATASE DELTA
2yd8	CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR PROTEIN TYROSINE PHOSPHATASE LAR IN COMPLEX WITH SUCROSE OCTASULPHATE
2yd9	CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-3 MODULE OF HUMAN RECEPTOR PROTEIN TYROSINE PHOSPHATASE SIGMA

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 3)

Sites (3, 3)

SS Bonds (4, 4)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 4)

PROSITE Motifs (0, 0)

Exons (7, 14)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (23, 23)

Visualization

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Still Images

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Databases

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File