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2YD7
Biol. Unit 1
Info
Asym.Unit (140 KB)
Biol.Unit 1 (69 KB)
Biol.Unit 2 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR PROTEIN TYROSINE PHOSPHATASE DELTA
Authors
:
C. H. Coles, Y. Shen, A. P. Tenney, C. Siebold, G. C. Sutton, W. Lu, J. T. Ga E. Y. Jones, J. G. Flanagan, A. R. Aricescu
Date
:
17 Mar 11 (Deposition) - 13 Apr 11 (Release) - 04 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. H. Coles, Y. Shen, A. P. Tenney, C. Siebold, G. C. Sutton, W. Lu, J. T. Gallagher, E. Y. Jones, J. G. Flanagan, A. R. Aricescu
Proteoglycan-Specific Molecular Switch For Rptp Sigma Clustering And Neuronal Extension.
Science V. 332 484 2011
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
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Label:
No.
Name
Count
Type
Full Name
1
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:130 , GLY A:131 , GLN A:133 , ARG B:141 , THR B:142
BINDING SITE FOR RESIDUE PO4 B1221
2
AC2
SOFTWARE
ARG A:141 , THR A:142 , MET B:130 , GLY B:131 , GLN B:133 , HOH B:2064
BINDING SITE FOR RESIDUE PO4 B1222
3
AC3
SOFTWARE
GLU A:93 , ALA A:94 , ARG A:112 , LEU A:113 , THR A:114
BINDING SITE FOR RESIDUE PO4 A1221
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_035645 (R28Q, chain A, )
2: VAR_PTPRD_HUMAN_CCDS6472_1_01 (R28Q, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035645
R
28
Q
PTPRD_HUMAN
Unclassified
---
A
R
28
Q
2
CancerSNP
VAR_PTPRD_HUMAN_CCDS6472_1_01
*
R
28
Q
PTPRD_HUMAN
Disease (Colorectal cancer)
---
A
R
28
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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