2YAV - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   ZN INHIBITED SULFUR OXYGENASE REDUCTASE

Authors :   A. Veith, T. Urich, K. Seyfarth, J. Protze, C. Frazao, A. Kletzin

Date :   25 Feb 11 (Deposition) - 21 Dec 11 (Release) - 21 Dec 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F  (4x)

Keywords :   Oxidoreductase, Mononuclear Non- Heme Iron, Biogeochemical Sulfur Cycle, Thermophilic, Cysteine Persulphide, Icosatetramer (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Veith, T. Urich, K. Seyfarth, J. Protze, C. Frazao, A. Kletzin
Substrate Pathways And Mechanisms Of Inhibition In The Sulfur Oxygenase Reductase Of Acidianus Ambivalens.
Front. Microbiol. V. 2 37 2011
PubMed-ID: 21747782 | Reference-DOI: 10.3389/FMICB.2011.00037
(for further references see the PDB file header)

Molecule 1 - SULFUR OXYGENASE/REDUCTASE
	Chains	:	A, B, C, D, E, F
	EC Number	:	1.13.11.55
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector	:	PASK75
	Fragment	:	RESIDUES 1-308
	Organism Scientific	:	ACIDIANUS AMBIVALENS
	Organism Taxid	:	2283
	Synonym	:	SULFUR OXYGENASE REDUCTASE, SOR

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (4x)	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 30)

No.	Name	Count	Type	Full Name
1	ACT	6	Ligand/Ion	ACETATE ION
2	CL	6	Ligand/Ion	CHLORIDE ION
3	CSS	6	Mod. Amino Acid	S-MERCAPTOCYSTEINE
4	FE	6	Ligand/Ion	FE (III) ION
5	ZN	6	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 48)

No.	Name	Count	Type	Full Name
1	ACT	24	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	CSS	24	Mod. Amino Acid	S-MERCAPTOCYSTEINE
4	FE	-1	Ligand/Ion	FE (III) ION
5	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:86 , HIS A:90 , GLU A:114 , HOH A:2006 , HOH A:2074	BINDING SITE FOR RESIDUE FE A 402
02	AC2	SOFTWARE	HIS A:277 , ACT A:406 , CL A:407 , HOH A:2232 , HOH A:2233	BINDING SITE FOR RESIDUE ZN A 405
03	AC3	SOFTWARE	ILE A:180 , LEU A:187 , VAL A:250 , HIS A:277 , ZN A:405 , CL A:407 , HOH A:2198 , HOH A:2233	BINDING SITE FOR RESIDUE ACT A 406
04	AC4	SOFTWARE	HIS A:277 , PRO A:288 , ZN A:405 , ACT A:406	BINDING SITE FOR RESIDUE CL A 407
05	AC5	SOFTWARE	HIS B:86 , HIS B:90 , GLU B:114 , HOH B:2007 , HOH B:2063	BINDING SITE FOR RESIDUE FE B 402
06	AC6	SOFTWARE	HIS B:277 , ACT B:406 , CL B:407 , HOH B:2221 , HOH B:2222	BINDING SITE FOR RESIDUE ZN B 405
07	AC7	SOFTWARE	ILE B:180 , LEU B:187 , VAL B:250 , MET B:264 , HIS B:277 , ZN B:405 , CL B:407 , HOH B:2221	BINDING SITE FOR RESIDUE ACT B 406
08	AC8	SOFTWARE	HIS B:277 , PRO B:288 , ZN B:405 , ACT B:406	BINDING SITE FOR RESIDUE CL B 407
09	AC9	SOFTWARE	HIS C:86 , HIS C:90 , GLU C:114 , HOH C:2005 , HOH C:2063	BINDING SITE FOR RESIDUE FE C 402
10	BC1	SOFTWARE	HIS C:277 , ACT C:406 , CL C:407 , HOH C:2220 , HOH C:2221	BINDING SITE FOR RESIDUE ZN C 405
11	BC2	SOFTWARE	LEU C:187 , VAL C:250 , HIS C:277 , ZN C:405 , CL C:407 , HOH C:2221	BINDING SITE FOR RESIDUE ACT C 406
12	BC3	SOFTWARE	HIS C:277 , PRO C:288 , ZN C:405 , ACT C:406 , HOH C:2189	BINDING SITE FOR RESIDUE CL C 407
13	BC4	SOFTWARE	HIS D:86 , HIS D:90 , GLU D:114 , HOH D:2007 , HOH D:2070	BINDING SITE FOR RESIDUE FE D 402
14	BC5	SOFTWARE	HIS D:277 , ACT D:406 , CL D:407 , HOH D:2225 , HOH D:2226	BINDING SITE FOR RESIDUE ZN D 405
15	BC6	SOFTWARE	ILE D:180 , LEU D:187 , VAL D:250 , MET D:264 , HIS D:277 , ZN D:405 , CL D:407 , HOH D:2225	BINDING SITE FOR RESIDUE ACT D 406
16	BC7	SOFTWARE	HIS D:277 , PRO D:288 , ZN D:405 , ACT D:406 , HOH D:2193	BINDING SITE FOR RESIDUE CL D 407
17	BC8	SOFTWARE	HIS E:86 , HIS E:90 , GLU E:114 , HOH E:2003 , HOH E:2056	BINDING SITE FOR RESIDUE FE E 402
18	BC9	SOFTWARE	HIS E:277 , ACT E:406 , CL E:407 , HOH E:2214 , HOH E:2215	BINDING SITE FOR RESIDUE ZN E 405
19	CC1	SOFTWARE	ILE E:180 , LEU E:187 , VAL E:250 , HIS E:277 , ZN E:405 , CL E:407 , HOH E:2214	BINDING SITE FOR RESIDUE ACT E 406
20	CC2	SOFTWARE	HIS E:277 , PRO E:288 , ZN E:405 , ACT E:406 , HOH E:2183	BINDING SITE FOR RESIDUE CL E 407
21	CC3	SOFTWARE	HIS F:86 , HIS F:90 , GLU F:114 , HOH F:2009 , HOH F:2080	BINDING SITE FOR RESIDUE FE F 402
22	CC4	SOFTWARE	HIS F:277 , ACT F:406 , CL F:407 , HOH F:2240 , HOH F:2241	BINDING SITE FOR RESIDUE ZN F 405
23	CC5	SOFTWARE	ILE F:180 , VAL F:250 , MET F:264 , HIS F:277 , ZN F:405 , CL F:407 , HOH F:2240	BINDING SITE FOR RESIDUE ACT F 406
24	CC6	SOFTWARE	HIS F:277 , PRO F:288 , ZN F:405 , ACT F:406	BINDING SITE FOR RESIDUE CL F 407

(no "SS Bond" information available for 2YAV)

Asymmetric Unit

No.	Residues
1	Gly A:111	-	Pro A:112
2	Thr A:244	-	Pro A:245
3	Gly A:287	-	Pro A:288
4	Gly B:111	-	Pro B:112
5	Thr B:244	-	Pro B:245
6	Gly B:287	-	Pro B:288
7	Gly C:111	-	Pro C:112
8	Thr C:244	-	Pro C:245
9	Gly C:287	-	Pro C:288
10	Gly D:111	-	Pro D:112
11	Thr D:244	-	Pro D:245
12	Gly D:287	-	Pro D:288
13	Gly E:111	-	Pro E:112
14	Thr E:244	-	Pro E:245
15	Gly E:287	-	Pro E:288
16	Gly F:111	-	Pro F:112
17	Thr F:244	-	Pro F:245
18	Gly F:287	-	Pro F:288

(no "SAP(SNP)/Variant" information available for 2YAV)

(no "PROSITE Motif" information available for 2YAV)

(no "Exon" information available for 2YAV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:307
 aligned with SOR_ACIAM | P29082 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:307
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       
            SOR_ACIAM     2 PKPYVAINMAELKNEPKTFEMFASVGPKVCMVTARHPGFVGFQNHIQIGILPFGNRYGGAKMDMTKESSTVRVLQYTFWKDWKDHEEMHRQNWSYLFRLCYSCASQMIWGPWEPIYEIIYANMPINTEMTDFTAVVGKKFAEGKPLDIPVISQPYGKRVVAFAEHSVIPGKEKQFEDAIVRTLEMLKKAPGFLGAMVLKEIGVSGIGSMQFGAKGFHQVLENPGSLEPDPNNVMYSVPEAKNTPQQYIVHVEWANTDALMFGMGRVLLYPELRQVHDEVLDTLVYGPYIRILNPMMEGTFWREYLNE 308
               SCOP domains d2yava_ A: automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee.hhhhhhhhhhhhhhhhhhhh....eeeeeeeeeeee...................eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.eeeeeeeee........hhhhhhhhhhhh.hhhhh..........eeeeeeeee...hhhhhhhhhhhhhhhhh....eeeeeeeeeeee........hhhhhhhhhh.......hhhhh...hhhhh...eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeeeee.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yav A   2 PKPYVAINMAELKNEPKTFEMFASVGPKVcMVTARHPGFVGFQNHIQIGILPFGNRYGGAKMDMTKESSTVRVLQYTFWKDWKDHEEMHRQNWSYLFRLCYSCASQMIWGPWEPIYEIIYANMPINTEMTDFTAVVGKKFAEGKPLDIPVISQPYGKRVVAFAEHSVIPGKEKQFEDAIVRTLEMLKKAPGFLGAMVLKEIGVSGIGSMQFGAKGFHQVLENPGSLEPDPNNVMYSVPEAKNTPQQYIVHVEWANTDALMFGMGRVLLYPELRQVHDEVLDTLVYGPYIRILNPMMEGTFWREYLNE 308
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       
                                                        31-CSS

Chain B from PDB  Type:PROTEIN  Length:307
 aligned with SOR_ACIAM | P29082 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:307
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       
            SOR_ACIAM     2 PKPYVAINMAELKNEPKTFEMFASVGPKVCMVTARHPGFVGFQNHIQIGILPFGNRYGGAKMDMTKESSTVRVLQYTFWKDWKDHEEMHRQNWSYLFRLCYSCASQMIWGPWEPIYEIIYANMPINTEMTDFTAVVGKKFAEGKPLDIPVISQPYGKRVVAFAEHSVIPGKEKQFEDAIVRTLEMLKKAPGFLGAMVLKEIGVSGIGSMQFGAKGFHQVLENPGSLEPDPNNVMYSVPEAKNTPQQYIVHVEWANTDALMFGMGRVLLYPELRQVHDEVLDTLVYGPYIRILNPMMEGTFWREYLNE 308
               SCOP domains d2yavb_ B: automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee.hhhhhhhhhhhhhhhhhhhh....eeeeeeeeeeee...................eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.eeeeeeeee........hhhhhhhhhhhh.hhhhh..........eeeeeeeee...hhhhhhhhhhhhhhhhh....eeeeeeeeeeee........hhhhhhhhhh.......hhhhh...hhhhh...eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeeeee.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yav B   2 PKPYVAINMAELKNEPKTFEMFASVGPKVcMVTARHPGFVGFQNHIQIGILPFGNRYGGAKMDMTKESSTVRVLQYTFWKDWKDHEEMHRQNWSYLFRLCYSCASQMIWGPWEPIYEIIYANMPINTEMTDFTAVVGKKFAEGKPLDIPVISQPYGKRVVAFAEHSVIPGKEKQFEDAIVRTLEMLKKAPGFLGAMVLKEIGVSGIGSMQFGAKGFHQVLENPGSLEPDPNNVMYSVPEAKNTPQQYIVHVEWANTDALMFGMGRVLLYPELRQVHDEVLDTLVYGPYIRILNPMMEGTFWREYLNE 308
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       
                                                        31-CSS

Chain C from PDB  Type:PROTEIN  Length:307
 aligned with SOR_ACIAM | P29082 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:307
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       
            SOR_ACIAM     2 PKPYVAINMAELKNEPKTFEMFASVGPKVCMVTARHPGFVGFQNHIQIGILPFGNRYGGAKMDMTKESSTVRVLQYTFWKDWKDHEEMHRQNWSYLFRLCYSCASQMIWGPWEPIYEIIYANMPINTEMTDFTAVVGKKFAEGKPLDIPVISQPYGKRVVAFAEHSVIPGKEKQFEDAIVRTLEMLKKAPGFLGAMVLKEIGVSGIGSMQFGAKGFHQVLENPGSLEPDPNNVMYSVPEAKNTPQQYIVHVEWANTDALMFGMGRVLLYPELRQVHDEVLDTLVYGPYIRILNPMMEGTFWREYLNE 308
               SCOP domains d2yavc_ C: automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee.hhhhhhhhhhhhhhhhhhhh....eeeeeeeeeeee...................eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.eeeeeeeee........hhhhhhhhhhhh.hhhhh..........eeeeeeeee...hhhhhhhhhhhhhhhhh....eeeeeeeeeeee........hhhhhhhhhh.......hhhhh...hhhhh...eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeeeee.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yav C   2 PKPYVAINMAELKNEPKTFEMFASVGPKVcMVTARHPGFVGFQNHIQIGILPFGNRYGGAKMDMTKESSTVRVLQYTFWKDWKDHEEMHRQNWSYLFRLCYSCASQMIWGPWEPIYEIIYANMPINTEMTDFTAVVGKKFAEGKPLDIPVISQPYGKRVVAFAEHSVIPGKEKQFEDAIVRTLEMLKKAPGFLGAMVLKEIGVSGIGSMQFGAKGFHQVLENPGSLEPDPNNVMYSVPEAKNTPQQYIVHVEWANTDALMFGMGRVLLYPELRQVHDEVLDTLVYGPYIRILNPMMEGTFWREYLNE 308
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       
                                                        31-CSS

Chain D from PDB  Type:PROTEIN  Length:307
 aligned with SOR_ACIAM | P29082 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:307
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       
            SOR_ACIAM     2 PKPYVAINMAELKNEPKTFEMFASVGPKVCMVTARHPGFVGFQNHIQIGILPFGNRYGGAKMDMTKESSTVRVLQYTFWKDWKDHEEMHRQNWSYLFRLCYSCASQMIWGPWEPIYEIIYANMPINTEMTDFTAVVGKKFAEGKPLDIPVISQPYGKRVVAFAEHSVIPGKEKQFEDAIVRTLEMLKKAPGFLGAMVLKEIGVSGIGSMQFGAKGFHQVLENPGSLEPDPNNVMYSVPEAKNTPQQYIVHVEWANTDALMFGMGRVLLYPELRQVHDEVLDTLVYGPYIRILNPMMEGTFWREYLNE 308
               SCOP domains d2yavd_ D: automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee.hhhhhhhhhhhhhhhhhhhh....eeeeeeeeeeee...................eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.eeeeeeeee........hhhhhhhhhhhh.hhhhh..........eeeeeeeee...hhhhhhhhhhhhhhhhh....eeeeeeeeeeee........hhhhhhhhhh.......hhhhh...hhhhh...eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeeeee.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yav D   2 PKPYVAINMAELKNEPKTFEMFASVGPKVcMVTARHPGFVGFQNHIQIGILPFGNRYGGAKMDMTKESSTVRVLQYTFWKDWKDHEEMHRQNWSYLFRLCYSCASQMIWGPWEPIYEIIYANMPINTEMTDFTAVVGKKFAEGKPLDIPVISQPYGKRVVAFAEHSVIPGKEKQFEDAIVRTLEMLKKAPGFLGAMVLKEIGVSGIGSMQFGAKGFHQVLENPGSLEPDPNNVMYSVPEAKNTPQQYIVHVEWANTDALMFGMGRVLLYPELRQVHDEVLDTLVYGPYIRILNPMMEGTFWREYLNE 308
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       
                                                        31-CSS

Chain E from PDB  Type:PROTEIN  Length:307
 aligned with SOR_ACIAM | P29082 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:307
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       
            SOR_ACIAM     2 PKPYVAINMAELKNEPKTFEMFASVGPKVCMVTARHPGFVGFQNHIQIGILPFGNRYGGAKMDMTKESSTVRVLQYTFWKDWKDHEEMHRQNWSYLFRLCYSCASQMIWGPWEPIYEIIYANMPINTEMTDFTAVVGKKFAEGKPLDIPVISQPYGKRVVAFAEHSVIPGKEKQFEDAIVRTLEMLKKAPGFLGAMVLKEIGVSGIGSMQFGAKGFHQVLENPGSLEPDPNNVMYSVPEAKNTPQQYIVHVEWANTDALMFGMGRVLLYPELRQVHDEVLDTLVYGPYIRILNPMMEGTFWREYLNE 308
               SCOP domains d2yave_ E: automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee.hhhhhhhhhhhhhhhhhhhh....eeeeeeeeeeee...................eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.eeeeeeeee........hhhhhhhhhhhh.hhhhh..........eeeeeeeee...hhhhhhhhhhhhhhhhh....eeeeeeeeeeee........hhhhhhhhhh.......hhhhh...hhhhh...eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeeeee.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yav E   2 PKPYVAINMAELKNEPKTFEMFASVGPKVcMVTARHPGFVGFQNHIQIGILPFGNRYGGAKMDMTKESSTVRVLQYTFWKDWKDHEEMHRQNWSYLFRLCYSCASQMIWGPWEPIYEIIYANMPINTEMTDFTAVVGKKFAEGKPLDIPVISQPYGKRVVAFAEHSVIPGKEKQFEDAIVRTLEMLKKAPGFLGAMVLKEIGVSGIGSMQFGAKGFHQVLENPGSLEPDPNNVMYSVPEAKNTPQQYIVHVEWANTDALMFGMGRVLLYPELRQVHDEVLDTLVYGPYIRILNPMMEGTFWREYLNE 308
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       
                                                        31-CSS

Chain F from PDB  Type:PROTEIN  Length:307
 aligned with SOR_ACIAM | P29082 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:307
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       
            SOR_ACIAM     2 PKPYVAINMAELKNEPKTFEMFASVGPKVCMVTARHPGFVGFQNHIQIGILPFGNRYGGAKMDMTKESSTVRVLQYTFWKDWKDHEEMHRQNWSYLFRLCYSCASQMIWGPWEPIYEIIYANMPINTEMTDFTAVVGKKFAEGKPLDIPVISQPYGKRVVAFAEHSVIPGKEKQFEDAIVRTLEMLKKAPGFLGAMVLKEIGVSGIGSMQFGAKGFHQVLENPGSLEPDPNNVMYSVPEAKNTPQQYIVHVEWANTDALMFGMGRVLLYPELRQVHDEVLDTLVYGPYIRILNPMMEGTFWREYLNE 308
               SCOP domains d2yavf_ F: automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee.hhhhhhhhhhhhhhhhhhhh....eeeeeeeeeeee...................eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.eeeeeeeee........hhhhhhhhhhhh.hhhhh..........eeeeeeeee...hhhhhhhhhhhhhhhhh....eeeeeeeeeeee........hhhhhhhhhh.......hhhhh...hhhhh...eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeeeeeee.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yav F   2 PKPYVAINMAELKNEPKTFEMFASVGPKVcMVTARHPGFVGFQNHIQIGILPFGNRYGGAKMDMTKESSTVRVLQYTFWKDWKDHEEMHRQNWSYLFRLCYSCASQMIWGPWEPIYEIIYANMPINTEMTDFTAVVGKKFAEGKPLDIPVISQPYGKRVVAFAEHSVIPGKEKQFEDAIVRTLEMLKKAPGFLGAMVLKEIGVSGIGSMQFGAKGFHQVLENPGSLEPDPNNVMYSVPEAKNTPQQYIVHVEWANTDALMFGMGRVLLYPELRQVHDEVLDTLVYGPYIRILNPMMEGTFWREYLNE 308
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       
                                                        31-CSS

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Ferredoxin-like (1795)

Superfamily: Dimeric alpha+beta barrel (122)

Family: SOR-like (6)

Protein domain: automated matches (5)

Acidianus ambivalens [TaxId: 2283] (4)

1a	d2yava_	A:
1b	d2yavb_	B:
1c	d2yavc_	C:
1d	d2yavd_	D:
1e	d2yave_	E:
1f	d2yavf_	F:

(no "CATH Domain" information available for 2YAV)

(no "Pfam Domain" information available for 2YAV)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (SOR_ACIAM | P29082)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0033755	sulfur oxygenase/reductase activity	Catalysis of the reaction: 4 sulfur + 4 H2O + O2 = 2 hydrogen sulfide + 2 bisulfite + 2 H+.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
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	Cis Peptide Bonds
		Gly A:111 - Pro A:112	[ RasMol ]
		Gly A:287 - Pro A:288	[ RasMol ]
		Gly B:111 - Pro B:112	[ RasMol ]
		Gly B:287 - Pro B:288	[ RasMol ]
		Gly C:111 - Pro C:112	[ RasMol ]
		Gly C:287 - Pro C:288	[ RasMol ]
		Gly D:111 - Pro D:112	[ RasMol ]
		Gly D:287 - Pro D:288	[ RasMol ]
		Gly E:111 - Pro E:112	[ RasMol ]
		Gly E:287 - Pro E:288	[ RasMol ]
		Gly F:111 - Pro F:112	[ RasMol ]
		Gly F:287 - Pro F:288	[ RasMol ]
		Thr A:244 - Pro A:245	[ RasMol ]
		Thr B:244 - Pro B:245	[ RasMol ]
		Thr C:244 - Pro C:245	[ RasMol ]
		Thr D:244 - Pro D:245	[ RasMol ]
		Thr E:244 - Pro E:245	[ RasMol ]
		Thr F:244 - Pro F:245	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2yav
		Family and Domain Information	:	ProDom \| SYSTERS
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
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Access by UniProt ID/Accession number
	SOR_ACIAM \| P29082
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		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.13.11.55
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	(no 'MIM ID' available)
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Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
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	SOR_ACIAM \| P29082
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UniProtKB/Swiss-Prot
	SOR_ACIAM \| P29082	:	2cb2 2yaw 2yax

2cb2	SULFUR OXYGENASE REDUCTASE FROM ACIDIANUS AMBIVALENS
2y9w	CRYSTAL STRUCTURE OF PPO3, A TYROSINASE FROM AGARICUS BISPORUS, IN DEOXY-FORM THAT CONTAINS ADDITIONAL UNKNOWN PEPTIN-LIKE SUBUNIT
2y9x	CRYSTAL STRUCTURE OF PPO3, A TYROSINASE FROM AGARICUS BISPORUS, IN DEOXY-FORM THAT CONTAINS ADDITIONAL UNKNOWN PEPTIN-LIKE SUBUNIT, WITH INHIBITOR TROPOLONE
2yaw	HG INHIBITED SULFUR OXYGENASE REDUCTASE
2yax	IODOACETAMIDE INHIBITED SULFUR OXYGENASE REDUCTASE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 30)

Sites (24, 24)

SS Bonds (0, 0)

Cis Peptide Bonds (18, 18)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File