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2YAV
Asym. Unit
Info
Asym.Unit (643 KB)
Biol.Unit 1, α-C (2.4 MB)
Biol.Unit 1 (2.4 MB)
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(1)
Title
:
ZN INHIBITED SULFUR OXYGENASE REDUCTASE
Authors
:
A. Veith, T. Urich, K. Seyfarth, J. Protze, C. Frazao, A. Kletzin
Date
:
25 Feb 11 (Deposition) - 21 Dec 11 (Release) - 21 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (4x)
Keywords
:
Oxidoreductase, Mononuclear Non- Heme Iron, Biogeochemical Sulfur Cycle, Thermophilic, Cysteine Persulphide, Icosatetramer
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Veith, T. Urich, K. Seyfarth, J. Protze, C. Frazao, A. Kletzin
Substrate Pathways And Mechanisms Of Inhibition In The Sulfur Oxygenase Reductase Of Acidianus Ambivalens.
Front. Microbiol. V. 2 37 2011
(for further references see the
PDB file header
)
[
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Hetero Components
(5, 30)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
3a: S-MERCAPTOCYSTEINE (CSSa)
3b: S-MERCAPTOCYSTEINE (CSSb)
3c: S-MERCAPTOCYSTEINE (CSSc)
3d: S-MERCAPTOCYSTEINE (CSSd)
3e: S-MERCAPTOCYSTEINE (CSSe)
3f: S-MERCAPTOCYSTEINE (CSSf)
4a: FE (III) ION (FEa)
4b: FE (III) ION (FEb)
4c: FE (III) ION (FEc)
4d: FE (III) ION (FEd)
4e: FE (III) ION (FEe)
4f: FE (III) ION (FEf)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
6
Ligand/Ion
ACETATE ION
2
CL
6
Ligand/Ion
CHLORIDE ION
3
CSS
6
Mod. Amino Acid
S-MERCAPTOCYSTEINE
4
FE
6
Ligand/Ion
FE (III) ION
5
ZN
6
Ligand/Ion
ZINC ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:86 , HIS A:90 , GLU A:114 , HOH A:2006 , HOH A:2074
BINDING SITE FOR RESIDUE FE A 402
02
AC2
SOFTWARE
HIS A:277 , ACT A:406 , CL A:407 , HOH A:2232 , HOH A:2233
BINDING SITE FOR RESIDUE ZN A 405
03
AC3
SOFTWARE
ILE A:180 , LEU A:187 , VAL A:250 , HIS A:277 , ZN A:405 , CL A:407 , HOH A:2198 , HOH A:2233
BINDING SITE FOR RESIDUE ACT A 406
04
AC4
SOFTWARE
HIS A:277 , PRO A:288 , ZN A:405 , ACT A:406
BINDING SITE FOR RESIDUE CL A 407
05
AC5
SOFTWARE
HIS B:86 , HIS B:90 , GLU B:114 , HOH B:2007 , HOH B:2063
BINDING SITE FOR RESIDUE FE B 402
06
AC6
SOFTWARE
HIS B:277 , ACT B:406 , CL B:407 , HOH B:2221 , HOH B:2222
BINDING SITE FOR RESIDUE ZN B 405
07
AC7
SOFTWARE
ILE B:180 , LEU B:187 , VAL B:250 , MET B:264 , HIS B:277 , ZN B:405 , CL B:407 , HOH B:2221
BINDING SITE FOR RESIDUE ACT B 406
08
AC8
SOFTWARE
HIS B:277 , PRO B:288 , ZN B:405 , ACT B:406
BINDING SITE FOR RESIDUE CL B 407
09
AC9
SOFTWARE
HIS C:86 , HIS C:90 , GLU C:114 , HOH C:2005 , HOH C:2063
BINDING SITE FOR RESIDUE FE C 402
10
BC1
SOFTWARE
HIS C:277 , ACT C:406 , CL C:407 , HOH C:2220 , HOH C:2221
BINDING SITE FOR RESIDUE ZN C 405
11
BC2
SOFTWARE
LEU C:187 , VAL C:250 , HIS C:277 , ZN C:405 , CL C:407 , HOH C:2221
BINDING SITE FOR RESIDUE ACT C 406
12
BC3
SOFTWARE
HIS C:277 , PRO C:288 , ZN C:405 , ACT C:406 , HOH C:2189
BINDING SITE FOR RESIDUE CL C 407
13
BC4
SOFTWARE
HIS D:86 , HIS D:90 , GLU D:114 , HOH D:2007 , HOH D:2070
BINDING SITE FOR RESIDUE FE D 402
14
BC5
SOFTWARE
HIS D:277 , ACT D:406 , CL D:407 , HOH D:2225 , HOH D:2226
BINDING SITE FOR RESIDUE ZN D 405
15
BC6
SOFTWARE
ILE D:180 , LEU D:187 , VAL D:250 , MET D:264 , HIS D:277 , ZN D:405 , CL D:407 , HOH D:2225
BINDING SITE FOR RESIDUE ACT D 406
16
BC7
SOFTWARE
HIS D:277 , PRO D:288 , ZN D:405 , ACT D:406 , HOH D:2193
BINDING SITE FOR RESIDUE CL D 407
17
BC8
SOFTWARE
HIS E:86 , HIS E:90 , GLU E:114 , HOH E:2003 , HOH E:2056
BINDING SITE FOR RESIDUE FE E 402
18
BC9
SOFTWARE
HIS E:277 , ACT E:406 , CL E:407 , HOH E:2214 , HOH E:2215
BINDING SITE FOR RESIDUE ZN E 405
19
CC1
SOFTWARE
ILE E:180 , LEU E:187 , VAL E:250 , HIS E:277 , ZN E:405 , CL E:407 , HOH E:2214
BINDING SITE FOR RESIDUE ACT E 406
20
CC2
SOFTWARE
HIS E:277 , PRO E:288 , ZN E:405 , ACT E:406 , HOH E:2183
BINDING SITE FOR RESIDUE CL E 407
21
CC3
SOFTWARE
HIS F:86 , HIS F:90 , GLU F:114 , HOH F:2009 , HOH F:2080
BINDING SITE FOR RESIDUE FE F 402
22
CC4
SOFTWARE
HIS F:277 , ACT F:406 , CL F:407 , HOH F:2240 , HOH F:2241
BINDING SITE FOR RESIDUE ZN F 405
23
CC5
SOFTWARE
ILE F:180 , VAL F:250 , MET F:264 , HIS F:277 , ZN F:405 , CL F:407 , HOH F:2240
BINDING SITE FOR RESIDUE ACT F 406
24
CC6
SOFTWARE
HIS F:277 , PRO F:288 , ZN F:405 , ACT F:406
BINDING SITE FOR RESIDUE CL F 407
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2yava_ (A:)
1b: SCOP_d2yavb_ (B:)
1c: SCOP_d2yavc_ (C:)
1d: SCOP_d2yavd_ (D:)
1e: SCOP_d2yave_ (E:)
1f: SCOP_d2yavf_ (F:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Dimeric alpha+beta barrel
(122)
Family
:
SOR-like
(6)
Protein domain
:
automated matches
(5)
Acidianus ambivalens [TaxId: 2283]
(4)
1a
d2yava_
A:
1b
d2yavb_
B:
1c
d2yavc_
C:
1d
d2yavd_
D:
1e
d2yave_
E:
1f
d2yavf_
F:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (643 KB)
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