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(-) Description

Title :  NTCA FROM SYNECHOCOCCUS ELONGATUS: ACTIVE AND INACTIVE
 
Authors :  J. L. Llacer, M. A. Castells, V. Rubio
Date :  11 Jul 10  (Deposition) - 18 Aug 10  (Release) - 15 Sep 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.05
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  D,E  (1x)
Biol. Unit 3:  C,F  (1x)
Keywords :  Transcription, Nitrogen Assimilation, Crp/Fnr Superfamily, 2-Oxoglutarate, Global Nitrogen Controller (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Llacer, J. Espinosa, M. A. Castells, A. Contreras, K. Forchhammer, V. Rubio
Structural Basis For The Regulation Of Ntca- Dependent Transcription By Proteins Pipx And Pii.
Proc. Natl. Acad. Sci. Usa V. 107 15397 2010
PubMed-ID: 20716687  |  Reference-DOI: 10.1073/PNAS.1007015107

(-) Compounds

Molecule 1 - GLOBAL NITROGEN REGULATOR
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: ROSETTA
    Expression System Taxid: 562
    Organism Scientific: SYNECHOCOCCUS ELONGATUS
    Organism Taxid: 1140
    Strain: PCC 7942
    Synonym: NTCA

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):    DE 
Biological Unit 3 (1x):   C  F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1AKG6Ligand/Ion2-OXOGLUTARIC ACID
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1AKG2Ligand/Ion2-OXOGLUTARIC ACID
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1AKG2Ligand/Ion2-OXOGLUTARIC ACID
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1AKG2Ligand/Ion2-OXOGLUTARIC ACID

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:53 , PHE A:74 , GLY A:75 , VAL A:76 , LEU A:77 , ARG A:87 , PHE A:88 , TYR A:89 , ARG A:128 , GLU B:133BINDING SITE FOR RESIDUE AKG A1223
2AC2SOFTWARELEU A:130 , GLU A:133 , LEU B:53 , PHE B:74 , GLY B:75 , VAL B:76 , LEU B:77 , ARG B:87 , PHE B:88 , TYR B:89 , ARG B:128BINDING SITE FOR RESIDUE AKG B1221
3AC3SOFTWAREPHE C:74 , GLY C:75 , VAL C:76 , LEU C:77 , ARG C:87 , PHE C:88 , TYR C:89 , ARG C:128BINDING SITE FOR RESIDUE AKG C1220
4AC4SOFTWARELEU D:53 , PHE D:74 , GLY D:75 , VAL D:76 , LEU D:77 , ARG D:87 , PHE D:88 , TYR D:89 , ARG D:128 , GLU E:133BINDING SITE FOR RESIDUE AKG D1223
5AC5SOFTWARELEU D:130 , GLU D:133 , LEU E:53 , PHE E:74 , GLY E:75 , VAL E:76 , LEU E:77 , ARG E:87 , PHE E:88 , TYR E:89 , ARG E:128BINDING SITE FOR RESIDUE AKG E1221
6AC6SOFTWAREPHE F:74 , GLY F:75 , VAL F:76 , LEU F:77 , SER F:78 , ARG F:87 , PHE F:88 , TYR F:89 , ARG F:128BINDING SITE FOR RESIDUE AKG F1220

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2XKP)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:58 -Ser A:59
2Glu D:58 -Ser D:59

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2XKP)

(-) PROSITE Motifs  (3, 18)

Asymmetric Unit (3, 18)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CNMP_BINDING_3PS50042 cAMP/cGMP binding motif profile.NTCA_SYNE722-128
 
 
 
 
 		  6A:24-128
B:22-128
C:22-128
D:24-128
E:22-128
F:22-128
2HTH_CRP_2PS51063 Crp-type HTH domain profile.NTCA_SYNE7142-215
 
 
 
 
 		  6A:142-215
B:142-215
C:142-215
D:142-215
E:142-215
F:142-215
3HTH_CRP_1PS00042 Crp-type HTH domain signature.NTCA_SYNE7173-196
 
 
 
 
 		  6A:173-196
B:173-196
C:173-196
D:173-196
E:173-196
F:173-196
Biological Unit 1 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CNMP_BINDING_3PS50042 cAMP/cGMP binding motif profile.NTCA_SYNE722-128
 
 
 
 
 		  2A:24-128
B:22-128
-
-
-
-
2HTH_CRP_2PS51063 Crp-type HTH domain profile.NTCA_SYNE7142-215
 
 
 
 
 		  2A:142-215
B:142-215
-
-
-
-
3HTH_CRP_1PS00042 Crp-type HTH domain signature.NTCA_SYNE7173-196
 
 
 
 
 		  2A:173-196
B:173-196
-
-
-
-
Biological Unit 2 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CNMP_BINDING_3PS50042 cAMP/cGMP binding motif profile.NTCA_SYNE722-128
 
 
 
 
 		  2-
-
-
D:24-128
E:22-128
-
2HTH_CRP_2PS51063 Crp-type HTH domain profile.NTCA_SYNE7142-215
 
 
 
 
 		  2-
-
-
D:142-215
E:142-215
-
3HTH_CRP_1PS00042 Crp-type HTH domain signature.NTCA_SYNE7173-196
 
 
 
 
 		  2-
-
-
D:173-196
E:173-196
-
Biological Unit 3 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CNMP_BINDING_3PS50042 cAMP/cGMP binding motif profile.NTCA_SYNE722-128
 
 
 
 
 		  2-
-
C:22-128
-
-
F:22-128
2HTH_CRP_2PS51063 Crp-type HTH domain profile.NTCA_SYNE7142-215
 
 
 
 
 		  2-
-
C:142-215
-
-
F:142-215
3HTH_CRP_1PS00042 Crp-type HTH domain signature.NTCA_SYNE7173-196
 
 
 
 
 		  2-
-
C:173-196
-
-
F:173-196

(-) Exons   (0, 0)

(no "Exon" information available for 2XKP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:207
 aligned with NTCA_SYNE7 | P29283 from UniProtKB/Swiss-Prot  Length:222

    Alignment length:218
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214        
           NTCA_SYNE7     5 ENSLLTMFRELGSGKLPLQIEQFERGKTIFFPGDPAERVYLLVKGAVKLSRVYESGEEITVALLRENSVFGVLSLLTGQRSDRFYHAVAFTPVQLFSVPIEFMQKALIERPELANVMLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGIPSPDGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRESKLIAIHKKRITVFNPVALSQQFS 222
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh.---------.eee....eee.......eeeeeee..eeeeee.....eeeeeee...eeehhhhhh.--......eeee...eeeeeeehhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhheeee..eeee....hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeeeehhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------CNMP_BINDING_3  PDB: A:24-128 UniProt: 22-128                                                              -------------HTH_CRP_2  PDB: A:142-215 UniProt: 142-215                                ------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_1  PDB: A:173-19-------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xkp A   5 ENSLLTMFRE---------IEQFERGKTIFFPGDPAERVYLLVKGAVKLSRVYESGEEITVALLRENSVFGVLSLLT--RSDRFYHAVAFTPVQLFSVPIEFMQKALIERPELANVMLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGIPSPDGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRESKLIAIHKKRITVFNPVALSQQFS 222
                                    14        24        34        44        54        64        74      | 84        94       104       114       124       134       144       154       164       174       184       194       204       214        
                                    14        24                                                       81 84                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:211
 aligned with NTCA_SYNE7 | P29283 from UniProtKB/Swiss-Prot  Length:222

    Alignment length:215
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215     
           NTCA_SYNE7     6 NSLLTMFRELGSGKLPLQIEQFERGKTIFFPGDPAERVYLLVKGAVKLSRVYESGEEITVALLRENSVFGVLSLLTGQRSDRFYHAVAFTPVQLFSVPIEFMQKALIERPELANVMLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGIPSPDGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRESKLIAIHKKRITVFNPVALSQQ 220
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh---......eee....eee.......eeeeeee..eeeeee.....eeeeeee...eeehhhhhh..-......eeee...eeeeeeehhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhheeee..eeee....hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeeeehhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------CNMP_BINDING_3  PDB: B:22-128 UniProt: 22-128                                                              -------------HTH_CRP_2  PDB: B:142-215 UniProt: 142-215                                ----- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_1  PDB: B:173-19------------------------ PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xkp B   6 NSLLTMFREL---KLPLQIEQFERGKTIFFPGDPAERVYLLVKGAVKLSRVYESGEEITVALLRENSVFGVLSLLTG-RSDRFYHAVAFTPVQLFSVPIEFMQKALIERPELANVMLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGIPSPDGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRESKLIAIHKKRITVFNPVALSQQ 220
                                    15   |    25        35        45        55        65        75      | 85        95       105       115       125       135       145       155       165       175       185       195       205       215     
                                    15  19                                                             82 |                                                                                                                                        
                                                                                                         84                                                                                                                                        


Chain C from PDB  Type:PROTEIN  Length:196
 aligned with NTCA_SYNE7 | P29283 from UniProtKB/Swiss-Prot  Length:222

    Alignment length:199
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210         
           NTCA_SYNE7    21 PLQIEQFERGKTIFFPGDPAERVYLLVKGAVKLSRVYESGEEITVALLRENSVFGVLSLLTGQRSDRFYHAVAFTPVQLFSVPIEFMQKALIERPELANVMLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGIPSPDGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRESKLIAIHKKRITVFNPVALSQ 219
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....eee.......eeeeeee..eeeeee.....eeeeeee...eee......---......eeee...eeeeeeehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhheeee..eeee....hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeeeehhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -CNMP_BINDING_3  PDB: C:22-128 UniProt: 22-128                                                              -------------HTH_CRP_2  PDB: C:142-215 UniProt: 142-215                                ---- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_1  PDB: C:173-19----------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xkp C  21 PLQIEQFERGKTIFFPGDPAERVYLLVKGAVKLSRVYESGEEITVALLRENSVFGVLSLL---RSDRFYHAVAFTPVQLFSVPIEFMQKALIERPELANVMLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGIPSPDGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRESKLIAIHKKRITVFNPVALSQ 219
                                    30        40        50        60        70        80   |    90       100       110       120       130       140       150       160       170       180       190       200       210         
                                                                                      80  84                                                                                                                                       


Chain D from PDB  Type:PROTEIN  Length:207
 aligned with NTCA_SYNE7 | P29283 from UniProtKB/Swiss-Prot  Length:222

    Alignment length:218
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214        
           NTCA_SYNE7     5 ENSLLTMFRELGSGKLPLQIEQFERGKTIFFPGDPAERVYLLVKGAVKLSRVYESGEEITVALLRENSVFGVLSLLTGQRSDRFYHAVAFTPVQLFSVPIEFMQKALIERPELANVMLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGIPSPDGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRESKLIAIHKKRITVFNPVALSQQFS 222
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh.---------.eee....eee.......eeeeeee..eeeeee.....eeeeeee...eeehhhhhh.--......eeee...eeeeeeehhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhheeee..eeee....hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeeeehhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------CNMP_BINDING_3  PDB: D:24-128 UniProt: 22-128                                                              -------------HTH_CRP_2  PDB: D:142-215 UniProt: 142-215                                ------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_1  PDB: D:173-19-------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xkp D   5 ENSLLTMFRE---------IEQFERGKTIFFPGDPAERVYLLVKGAVKLSRVYESGEEITVALLRENSVFGVLSLLT--RSDRFYHAVAFTPVQLFSVPIEFMQKALIERPELANVMLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGIPSPDGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRESKLIAIHKKRITVFNPVALSQQFS 222
                                    14        24        34        44        54        64        74      | 84        94       104       114       124       134       144       154       164       174       184       194       204       214        
                                    14        24                                                       81 84                                                                                                                                          


Chain E from PDB  Type:PROTEIN  Length:211
 aligned with NTCA_SYNE7 | P29283 from UniProtKB/Swiss-Prot  Length:222

    Alignment length:215
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215     
           NTCA_SYNE7     6 NSLLTMFRELGSGKLPLQIEQFERGKTIFFPGDPAERVYLLVKGAVKLSRVYESGEEITVALLRENSVFGVLSLLTGQRSDRFYHAVAFTPVQLFSVPIEFMQKALIERPELANVMLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGIPSPDGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRESKLIAIHKKRITVFNPVALSQQ 220
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh---......eee....eee.......eeeeeee..eeeeee.....eeeeeee...eeehhhhhh..-......eeee...eeeeeeehhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhheeee..eeee....hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeeeehhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------CNMP_BINDING_3  PDB: E:22-128 UniProt: 22-128                                                              -------------HTH_CRP_2  PDB: E:142-215 UniProt: 142-215                                ----- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_1  PDB: E:173-19------------------------ PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xkp E   6 NSLLTMFREL---KLPLQIEQFERGKTIFFPGDPAERVYLLVKGAVKLSRVYESGEEITVALLRENSVFGVLSLLTG-RSDRFYHAVAFTPVQLFSVPIEFMQKALIERPELANVMLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGIPSPDGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRESKLIAIHKKRITVFNPVALSQQ 220
                                    15   |    25        35        45        55        65        75      | 85        95       105       115       125       135       145       155       165       175       185       195       205       215     
                                    15  19                                                             82 |                                                                                                                                        
                                                                                                         84                                                                                                                                        


Chain F from PDB  Type:PROTEIN  Length:196
 aligned with NTCA_SYNE7 | P29283 from UniProtKB/Swiss-Prot  Length:222

    Alignment length:199
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210         
           NTCA_SYNE7    21 PLQIEQFERGKTIFFPGDPAERVYLLVKGAVKLSRVYESGEEITVALLRENSVFGVLSLLTGQRSDRFYHAVAFTPVQLFSVPIEFMQKALIERPELANVMLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGIPSPDGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRESKLIAIHKKRITVFNPVALSQ 219
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---cNMP_binding-2xkpF07 F:24-116                                                                -----------------------------HTH_Crp_2-2xkpF01 F:146-219                                                Pfam domains (1)
           Pfam domains (2) ---cNMP_binding-2xkpF08 F:24-116                                                                -----------------------------HTH_Crp_2-2xkpF02 F:146-219                                                Pfam domains (2)
           Pfam domains (3) ---cNMP_binding-2xkpF09 F:24-116                                                                -----------------------------HTH_Crp_2-2xkpF03 F:146-219                                                Pfam domains (3)
           Pfam domains (4) ---cNMP_binding-2xkpF10 F:24-116                                                                -----------------------------HTH_Crp_2-2xkpF04 F:146-219                                                Pfam domains (4)
           Pfam domains (5) ---cNMP_binding-2xkpF11 F:24-116                                                                -----------------------------HTH_Crp_2-2xkpF05 F:146-219                                                Pfam domains (5)
           Pfam domains (6) ---cNMP_binding-2xkpF12 F:24-116                                                                -----------------------------HTH_Crp_2-2xkpF06 F:146-219                                                Pfam domains (6)
         Sec.struct. author ..eeeee....eee.......eeeeeee..eeeeee.....eeeeeee...eee......---......eeee...eeeeeeehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhheeee..eeee....hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeeeehhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -CNMP_BINDING_3  PDB: F:22-128 UniProt: 22-128                                                              -------------HTH_CRP_2  PDB: F:142-215 UniProt: 142-215                                ---- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_1  PDB: F:173-19----------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xkp F  21 PLQIEQFERGKTIFFPGDPAERVYLLVKGAVKLSRVYESGEEITVALLRENSVFGVLSLL---RSDRFYHAVAFTPVQLFSVPIEFMQKALIERPELANVMLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGIPSPDGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRESKLIAIHKKRITVFNPVALSQ 219
                                    30        40        50        60        70        80   |    90       100       110       120       130       140       150       160       170       180       190       200       210         
                                                                                      80  84
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2XKP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2XKP)

(-) Pfam Domains  (2, 12)

Asymmetric Unit
(-)
Clan: HTH (544)
(-)
Clan: no clan defined [family: cNMP_binding] (41)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (NTCA_SYNE7 | P29283)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

 Visualization

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        NTCA_SYNE7 | P29283: 2xgx 2xhk 2xko

(-) Related Entries Specified in the PDB File

2xgx CRYSTAL STRUCTURE OF TRANSCRIPTION FACTOR NTCA FROM SYNECHOCOCCUS ELONGATUS (MERCURY DERIVATIVE)
2xhk CRYSTAL STRUCTURE OF TRANSCRIPTION FACTOR NTCA FROM SYNECHOCOCCUS ELONGATUS BOUND TO 2- OXOGLUTARATE
2xko CRYSTAL STRUCTURE OF THE COMPLEX OF NTCA WITH ITS TRANSCRIPTIONAL CO-ACTIVATOR PIPX