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2XKP
Asym. Unit
Info
Asym.Unit (203 KB)
Biol.Unit 1 (69 KB)
Biol.Unit 2 (69 KB)
Biol.Unit 3 (64 KB)
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(1)
Title
:
NTCA FROM SYNECHOCOCCUS ELONGATUS: ACTIVE AND INACTIVE
Authors
:
J. L. Llacer, M. A. Castells, V. Rubio
Date
:
11 Jul 10 (Deposition) - 18 Aug 10 (Release) - 15 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.05
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: D,E (1x)
Biol. Unit 3: C,F (1x)
Keywords
:
Transcription, Nitrogen Assimilation, Crp/Fnr Superfamily, 2-Oxoglutarate, Global Nitrogen Controller
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. L. Llacer, J. Espinosa, M. A. Castells, A. Contreras, K. Forchhammer, V. Rubio
Structural Basis For The Regulation Of Ntca- Dependent Transcription By Proteins Pipx And Pii.
Proc. Natl. Acad. Sci. Usa V. 107 15397 2010
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: 2-OXOGLUTARIC ACID (AKGa)
1b: 2-OXOGLUTARIC ACID (AKGb)
1c: 2-OXOGLUTARIC ACID (AKGc)
1d: 2-OXOGLUTARIC ACID (AKGd)
1e: 2-OXOGLUTARIC ACID (AKGe)
1f: 2-OXOGLUTARIC ACID (AKGf)
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Label:
No.
Name
Count
Type
Full Name
1
AKG
6
Ligand/Ion
2-OXOGLUTARIC ACID
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:53 , PHE A:74 , GLY A:75 , VAL A:76 , LEU A:77 , ARG A:87 , PHE A:88 , TYR A:89 , ARG A:128 , GLU B:133
BINDING SITE FOR RESIDUE AKG A1223
2
AC2
SOFTWARE
LEU A:130 , GLU A:133 , LEU B:53 , PHE B:74 , GLY B:75 , VAL B:76 , LEU B:77 , ARG B:87 , PHE B:88 , TYR B:89 , ARG B:128
BINDING SITE FOR RESIDUE AKG B1221
3
AC3
SOFTWARE
PHE C:74 , GLY C:75 , VAL C:76 , LEU C:77 , ARG C:87 , PHE C:88 , TYR C:89 , ARG C:128
BINDING SITE FOR RESIDUE AKG C1220
4
AC4
SOFTWARE
LEU D:53 , PHE D:74 , GLY D:75 , VAL D:76 , LEU D:77 , ARG D:87 , PHE D:88 , TYR D:89 , ARG D:128 , GLU E:133
BINDING SITE FOR RESIDUE AKG D1223
5
AC5
SOFTWARE
LEU D:130 , GLU D:133 , LEU E:53 , PHE E:74 , GLY E:75 , VAL E:76 , LEU E:77 , ARG E:87 , PHE E:88 , TYR E:89 , ARG E:128
BINDING SITE FOR RESIDUE AKG E1221
6
AC6
SOFTWARE
PHE F:74 , GLY F:75 , VAL F:76 , LEU F:77 , SER F:78 , ARG F:87 , PHE F:88 , TYR F:89 , ARG F:128
BINDING SITE FOR RESIDUE AKG F1220
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(3, 18)
Info
All PROSITE Patterns/Profiles
1: CNMP_BINDING_3 (A:24-128,B:22-128,C:22-128,D:24-12...)
2: HTH_CRP_2 (A:142-215,B:142-215,C:142-215,D:14...)
3: HTH_CRP_1 (A:173-196,B:173-196,C:173-196,D:17...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CNMP_BINDING_3
PS50042
cAMP/cGMP binding motif profile.
NTCA_SYNE7
22-128
6
A:24-128
B:22-128
C:22-128
D:24-128
E:22-128
F:22-128
2
HTH_CRP_2
PS51063
Crp-type HTH domain profile.
NTCA_SYNE7
142-215
6
A:142-215
B:142-215
C:142-215
D:142-215
E:142-215
F:142-215
3
HTH_CRP_1
PS00042
Crp-type HTH domain signature.
NTCA_SYNE7
173-196
6
A:173-196
B:173-196
C:173-196
D:173-196
E:173-196
F:173-196
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_HTH_Crp_2_2xkpF01 (F:146-219)
1b: PFAM_HTH_Crp_2_2xkpF02 (F:146-219)
1c: PFAM_HTH_Crp_2_2xkpF03 (F:146-219)
1d: PFAM_HTH_Crp_2_2xkpF04 (F:146-219)
1e: PFAM_HTH_Crp_2_2xkpF05 (F:146-219)
1f: PFAM_HTH_Crp_2_2xkpF06 (F:146-219)
2a: PFAM_cNMP_binding_2xkpF07 (F:24-116)
2b: PFAM_cNMP_binding_2xkpF08 (F:24-116)
2c: PFAM_cNMP_binding_2xkpF09 (F:24-116)
2d: PFAM_cNMP_binding_2xkpF10 (F:24-116)
2e: PFAM_cNMP_binding_2xkpF11 (F:24-116)
2f: PFAM_cNMP_binding_2xkpF12 (F:24-116)
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Clans
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)
(
)
Organisms
(
)
(
)
Clan
:
HTH
(544)
Family
:
HTH_Crp_2
(9)
Synechococcus elongatus (strain PCC 7942) (Anacystis nidulans R2)
(4)
1a
HTH_Crp_2-2xkpF01
F:146-219
1b
HTH_Crp_2-2xkpF02
F:146-219
1c
HTH_Crp_2-2xkpF03
F:146-219
1d
HTH_Crp_2-2xkpF04
F:146-219
1e
HTH_Crp_2-2xkpF05
F:146-219
1f
HTH_Crp_2-2xkpF06
F:146-219
Clan
:
no clan defined [family: cNMP_binding]
(41)
Family
:
cNMP_binding
(41)
Synechococcus elongatus (strain PCC 7942) (Anacystis nidulans R2)
(4)
2a
cNMP_binding-2xkpF07
F:24-116
2b
cNMP_binding-2xkpF08
F:24-116
2c
cNMP_binding-2xkpF09
F:24-116
2d
cNMP_binding-2xkpF10
F:24-116
2e
cNMP_binding-2xkpF11
F:24-116
2f
cNMP_binding-2xkpF12
F:24-116
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Asym.Unit (203 KB)
Header - Asym.Unit
Biol.Unit 1 (69 KB)
Header - Biol.Unit 1
Biol.Unit 2 (69 KB)
Header - Biol.Unit 2
Biol.Unit 3 (64 KB)
Header - Biol.Unit 3
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