2XGY - JenaLib

Asymmetric/Biological Unit

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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains d2xgya_ A: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.............hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xgy A   1 PIMEYEPVGPGLIAAWLKQVQEHGLTHPATITYFGVISINFTSVDINMLLNVTPGAEKQLVIDKIKEKAIAWDEMHPPPPADAAGPVPLTSDQIRGIGLSPEEAAGPRFADARTLYRTWVLEALQECQR 137
                              ||    16        26        36        46        56    ||  68        78        88        98       108       118       128         
                              3|                                                 61|                                                                         
                              10                                                  64

Chain B from PDB  Type:PROTEIN  Length:165
 aligned with PPIA_HUMAN | P62937 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:165
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     
           PPIA_HUMAN     1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE 165
               SCOP domains d2xgyb_ B: automated matches                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------Pro_isomerase-2xgyB01 B:7-163                                                                                                                                -- Pfam domains
         Sec.struct. author ....eeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhh............eee...eeee................................eeee...........eeee...hhhhh....eeeee..hhhhhhhhhh...........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------CSA_PPIASE_2  PDB: B:7-163 UniProt: 7-163                                                                                                                    -- PROSITE (1)
                PROSITE (2) -----------------------------------------------CSA_PPIASE_1      ---------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xgy B   1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE 165
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 2)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (30, 30)

Asymmetric/Biological Unit(hide GO term definitions)

Chain B (PPIA_HUMAN | P62937)

molecular function
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0042277	peptide binding	Interacting selectively and non-covalently with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds.
	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0051082	unfolded protein binding	Interacting selectively and non-covalently with an unfolded protein.
	GO:0046790	virion binding	Interacting selectively and non-covalently with a virion, either by binding to components of the capsid or the viral envelope.
biological process
	GO:0006278	RNA-dependent DNA biosynthetic process	A DNA biosynthetic process that uses RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strand.
	GO:0030260	entry into host cell	The invasion by an organism of a cell of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0075713	establishment of integrated proviral latency	A process by which the virus integrates into the host genome and establishes as a stable provirus or prophage.
	GO:0019064	fusion of virus membrane with host plasma membrane	Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
	GO:0050900	leukocyte migration	The movement of a leukocyte within or between different tissues and organs of the body.
	GO:0034389	lipid particle organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lipid particle.
	GO:0050714	positive regulation of protein secretion	Any process that activates or increases the frequency, rate or extent of the controlled release of a protein from a cell.
	GO:0045070	positive regulation of viral genome replication	Any process that activates or increases the frequency, rate or extent of viral genome replication.
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
	GO:0000413	protein peptidyl-prolyl isomerization	The modification of a protein by cis-trans isomerization of a proline residue.
	GO:0045069	regulation of viral genome replication	Any process that modulates the frequency, rate or extent of viral genome replication.
	GO:0019061	uncoating of virus	The process by which an incoming virus is disassembled in the host cell to release a replication-competent viral genome.
	GO:0019058	viral life cycle	A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019076	viral release from host cell	The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
	GO:0019068	virion assembly	A late phase of the viral life cycle during which all the components necessary for the formation of a mature virion collect at a particular site in the cell and the basic structure of the virus particle is formed.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005925	focal adhesion	Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	2xgy
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	PPIA_HUMAN \| P62937
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	5.2.1.8
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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		Disease Information	:	OMIM

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		Age Related Information	:	GenAge

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1ak4	HUMAN CYCLOPHILIN A BOUND TO THE AMINO- TERMINAL DOMAIN OF HIV-1 CAPSID
1awq	CYPA COMPLEXED WITH HAGPIA (PSEUDO-SYMMETRIC MONOMER)
1awr	CYPA COMPLEXED WITH HAGPIA
1aws	SECYPA COMPLEXED WITH HAGPIA (PSEUDO-SYMMETRIC MONOMER)
1awt	SECYPA COMPLEXED WITH HAGPIA
1awu	CYPA COMPLEXED WITH HVGPIA (PSEUDO-SYMMETRIC MONOMER)
1awv	CYPA COMPLEXED WITH HVGPIA
1bck	HUMAN CYCLOPHILIN A COMPLEXED WITH 2-THR CYCLOSPORIN
1cwa	MOL_ID: 1; MOLECULE: CYCLOPHILIN A; CHAIN: A ; ENGINEERED: YES; MOL_ID: 2; MOLECULE: CYCLOSPORIN A; CHAIN: C; ENGINEERED: YES
1cwb	MOL_ID: 1; MOLECULE: CYCLOPHILIN A; CHAIN: A ; ENGINEERED: YES; MOL_ID: 2; MOLECULE: [4 -[(E)-2-BUTENYL]-4,4,N-TRIMETHYL-L- THREONINE]1- CYCLOSPORIN; CHAIN: C; ENGINEERED : YES
1cwc	MOL_ID: 1; MOLECULE: CYCLOPHILIN A; CHAIN: A ; ENGINEERED: YES; MOL_ID: 2; MOLECULE: [4, N-DIMETHYLNORLEUCINE]4-CYCLOSPORIN; CHAIN: C ; ENGINEERED: YES
1cwf	HUMAN CYCLOPHILIN A COMPLEXED WITH 2-VAL CYCLOSPORIN
1cwh	HUMAN CYCLOPHILIN A COMPLEXED WITH 3-D-SER CYCLOSPORIN
1cwi	HUMAN CYCLOPHILIN A COMPLEXED WITH 2-VAL 3 -(N-METHYL)-D-ALANINE CYCLOSPORIN
1cwj	HUMAN CYCLOPHILIN A COMPLEXED WITH 2-VAL 3 -S-METHYL-SARCOSINE CYCLOSPORIN
1cwk	HUMAN CYCLOPHILIN A COMPLEXED WITH 1-(6,7 -DIHYDRO)MEBMT 2-VAL 3-D-(2-S-METHYL) SARCOSINE CYCLOSPORIN
1cwl	HUMAN CYCLOPHILIN A COMPLEXED WITH 4 4- HYDROXY-MELEU CYCLOSPORIN
1cwm	HUMAN CYCLOPHILIN A COMPLEXED WITH 4 MEILE CYCLOSPORIN
1cwo	HUMAN CYCLOPHILIN A COMPLEXED WITH THR2, LEU5, D-HIV8, LEU10 CYCLOSPORIN
1fgl	CYCLOPHILIN A COMPLEXED WITH A FRAGMENT OF HIV-1 GAGPROTEIN
1m63	CRYSTAL STRUCTURE OF CALCINEURIN-CYCLOPHILIN- CYCLOSPORINSHOWS COMMON BUT DISTINCT RECOGNITION OF IMMUNOPHILIN-DRUGCOMPLEXES
1m9c	X-RAY CRYSTAL STRUCTURE OF CYCLOPHILIN A/ HIV-1 CA N-TERMINAL DOMAIN (1-146) M- TYPE COMPLEX.
1m9d	X-RAY CRYSTAL STRUCTURE OF CYCLOPHILIN A/ HIV-1 CA N-TERMINAL DOMAIN (1-146) O- TYPE CHIMERA COMPLEX.
1m9e	X-RAY CRYSTAL STRUCTURE OF CYCLOPHILIN A/ HIV-1 CA N-TERMINAL DOMAIN (1-146) M- TYPE H87A COMPLEX.
1m9f	X-RAY CRYSTAL STRUCTURE OF CYCLOPHILIN A/ HIV-1 CA N-TERMINAL DOMAIN (1-146) M- TYPE H87A,A88M COMPLEX.
1m9x	X-RAY CRYSTAL STRUCTURE OF CYCLOPHILIN A/ HIV-1 CA N-TERMINAL DOMAIN (1-146) M- TYPE H87A,A88M,G89A COMPLEX.
1m9y	X-RAY CRYSTAL STRUCTURE OF CYCLOPHILIN A/ HIV-1 CA N-TERMINAL DOMAIN (1-146) M- TYPE H87A,G89A COMPLEX.
1mf8	CRYSTAL STRUCTURE OF HUMAN CALCINEURIN COMPLEXED WITHCYCLOSPORIN A AND HUMAN CYCLOPHILIN
1mik	MOL_ID: 1; MOLECULE: CYCLOPHILIN A; CHAIN: A ; ENGINEERED: YES; MOL_ID: 2; MOLECULE: [(5- HYDROXY)NORVALINE2]-CYCLOSPORIN; CHAIN: B; ENGINEERED: YES
1nmk	THE SANGLIFEHRIN-CYCLOPHILIN INTERACTION: DEGRADATION WORK,SYNTHETIC MACROCYCLIC ANALOGUES , X-RAY CRYSTAL STRUCTUREAND BINDING DATA
1oca	HUMAN CYCLOPHILIN A, UNLIGATED, NMR, 20 STRUCTURES
1rmh	RECOMBINANT CYCLOPHILIN A FROM HUMAN T CELL
1vbs	STRUCTURE OF CYCLOPHILIN COMPLEXED WITH (D) ALA CONTAINING TETRAPEPTIDE
1vbt	STRUCTURE OF CYCLOPHILIN COMPLEXED WITH SULFUR -SUBSTITUTED TETRAPEPTIDE AAPF
1w8l	ENZYMATIC AND STRUCTURAL CHARACTERIZATION OF NON PEPTIDE LIGAND CYCLOPHILIN COMPLEXES
1w8m	ENZYMATIC AND STRUCTURAL CHARACTERISATION OF NON PEPTIDE LIGAND CYCLOPHILIN COMPLEXES
1w8v	ENZYMATIC AND STRUCTURAL CHARACTERIZATION OF NON PEPTIDE LIGAND CYCLOPHILIN COMPLEXES
2alf	CRYSTAL STRUCTURE OF HUMAN CYPA MUTANT K131A
2cpl	CYCLOPHILIN A
2cyh	CYCLOPHILIN A COMPLEXED WITH DIPEPTIDE ALA- PRO
2rma	CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A
2rmb	CYCLOPHILIN A COMPLEXED WITH DIMETHYL- CYCLOSPORIN A
2x25	FREE ACETYL-CYPA ORTHORHOMBIC FORM
2x2a	FREE ACETYL-CYPA TRIGONAL FORM
2x2c	ACETYL-CYPA:CYCLOSPORINE COMPLEX
2x2d	ACETYL-CYPA:HIV-1 N-TERM CAPSID DOMAIN COMPLEX
2xgu	STRUCTURE OF THE N-TERMINAL DOMAIN OF CAPSID PROTEIN FROM RABBIT ENDOGENOUS LENTIVIRUS (RELIK)
3cyh	CYCLOPHILIN A COMPLEXED WITH DIPEPTIDE SER- PRO
3cys	CYCLOPHILIN A COMPLEXED WITH CYCLOSPORIN A ( NMR, 22 STRUCTURES)
4cyh	CYCLOPHILIN A COMPLEXED WITH DIPEPTIDE HIS- PRO
5cyh	CYCLOPHILIN A COMPLEXED WITH DIPEPTIDE GLY- PRO

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Exons (0, 0)

Sequences/Alignments