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(-) Description

Title :  STRUCTURE OF THE N-TERMINAL DOMAIN OF CAPSID PROTEIN FROM RABBIT ENDOGENOUS LENTIVIRUS (RELIK)
 
Authors :  D. C. Goldstone, I. A. Taylor, L. E. Robertson, L. F. Haire, J. P. Stoye
Date :  07 Jun 10  (Deposition) - 22 Sep 10  (Release) - 22 Sep 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Viral Protein, Retroviral Capsid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. C. Goldstone, M. W. Yap, L. E. Robertson, L. F. Haire, W. R. Taylor, A. Katzourakis, J. P. Stoye, I. A. Taylor
Structural And Functional Analysis Of Prehistoric Lentiviruses Uncovers An Ancient Molecular Interface.
Cell Host Microbe V. 8 248 2010
PubMed-ID: 20833376  |  Reference-DOI: 10.1016/J.CHOM.2010.08.006

(-) Compounds

Molecule 1 - RELIK CAPSID N-TERMINAL DOMAIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Other Details: SYNTHESISED RECONSTRUCTED GENE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:129 , GLN A:133 , PRO B:34 , THR B:38 , GLN B:133 , GLN B:136 , HOH B:2136BINDING SITE FOR RESIDUE ACT B1139

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2XGU)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:93 -Pro A:94
2Gly B:93 -Pro B:94

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2XGU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2XGU)

(-) Exons   (0, 0)

(no "Exon" information available for 2XGU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee...hhhhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.............hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xgu A   1 PIMLRGGRQEYEPVGPGLIAAWLKQVQEHGLTHPATITYFGVISINFTSVDINMLLNVTPGFAAEKQLVIDKIKEKAIAWDEMHPPPPADAAGPVPLTSDQIRGIGLSPEEAAGPRFADARTLYRTWVLEALQECQRTISPLE 143
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140   


Chain B from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee...hhhhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh............hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xgu B   1 PIMLRGGRQEYEPVGPGLIAAWLKQVQEHGLTHPATITYFGVISINFTSVDINMLLNVTPAEKQLVIDKIKEKAIAWDEMHPPPPAAAGPVPLTSDQIRGIGLSPEEAAGPRFADARTLYRTWVLEALQECQRT 138
                                    10        20        30        40        50        60|       73        83     || 94       104       114       124       134    
                                                                                      60|                       89|                                               
                                                                                       64                        91
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2XGU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2XGU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2XGU)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2XGU)

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  Cis Peptide Bonds
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  2xgu
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 2XGU)

(-) Related Entries Specified in the PDB File

2xgv STRUCTURE OF THE N-TERMINAL DOMAIN OF CAPSID PROTEIN FROM RABBIT ENDOGENOUS LENTIVIRUS (RELIK)
2xgy COMPLEX OF RABBIT ENDOGENOUS LENTIVIRUS (RELIK )CAPSID WITH CYCLOPHILIN A