2X2B - JenaLib

Title :   CRYSTAL STRUCTURE OF MALONYL-ACP (ACYL CARRIER PROTEIN) FROM BACILLUS SUBTILIS

Authors :   M. Bellinzoni, M. A. Martinez, D. Demendoza, P. M. Alzari

Date :   12 Jan 10 (Deposition) - 16 Mar 10 (Release) - 12 Oct 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.69

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Biosynthetic Protein, Phosphopantetheine, Fatty Acid Biosynthesis, Lipid Synthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. A. Martinez, M. E. Zaballa, F. Schaeffer, M. Bellinzoni, D. Albanesi, G. E. Schujman, A. J. Vila, P. M. Alzari, D. De Mendoza
A Novel Role Of Malonyl-Acp In Lipid Homeostasis.
Biochemistry V. 49 3161 2010
PubMed-ID: 20201588 | Reference-DOI: 10.1021/BI100136N

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 3)

Asymmetric Unit (2, 3)

No.	Name	Count	Type	Full Name
1	PT	2	Ligand/Ion	PLATINUM (II) ION
2	SXM	1	Ligand/Ion	3-{[2-({N-[(2S)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-BETA-ALANYL}AMINO)ETHYL]SULFANYL}-3-OXOPROPANOIC ACID

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	PT	-1	Ligand/Ion	PLATINUM (II) ION
2	SXM	2	Ligand/Ion	3-{[2-({N-[(2S)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-BETA-ALANYL}AMINO)ETHYL]SULFANYL}-3-OXOPROPANOIC ACID

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Asymmetric Unit (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CARRIER	PS50075	Carrier protein (CP) domain profile.	ACP_BACSU	2-77	1	A:2-76
2	PHOSPHOPANTETHEINE	PS00012	Phosphopantetheine attachment site.	ACP_BACSU	32-47	1	A:32-47

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CARRIER	PS50075	Carrier protein (CP) domain profile.	ACP_BACSU	2-77	2	A:2-76
2	PHOSPHOPANTETHEINE	PS00012	Phosphopantetheine attachment site.	ACP_BACSU	32-47	2	A:32-47

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:76
 aligned with ACP_BACSU | P80643 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:76
                                    10        20        30        40        50        60        70      
             ACP_BACSU    1 MADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQNQ 76
               SCOP domains d2x2ba_ A: automated matches                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains -----PP-binding-2x2bA01 A:6-73                                           --- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh.hhhhh............hhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -CARRIER  PDB: A:2-76 UniProt: 2-77                                          PROSITE (1)
                PROSITE (2) -------------------------------PHOSPHOPANTETHEI----------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------- Transcript
                  2x2b A  1 MADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQNQ 76
                                    10        20        30        40        50        60        70

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (5, 5)

Asymmetric Unit(hide GO term definitions)

Chain A (ACP_BACSU | P80643)

molecular function
	GO:0000036	ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	Interacting selectively and non-covalently with the attachment site of the phosphopantetheine prosthetic group of an acyl carrier protein (ACP) as part of the process of fatty acid biosynthesis.
biological process
	GO:0006633	fatty acid biosynthetic process	The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
	GO:0006631	fatty acid metabolic process	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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Description