1F80 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   HOLO-(ACYL CARRIER PROTEIN) SYNTHASE IN COMPLEX WITH HOLO-(ACYL CARRIER PROTEIN)

Authors :   K. D. Parris, L. Lin, A. Tam, R. Mathew, J. Hixon, M. Stahl, C. C. Fritz, J. Seehra, W. S. Somers

Date :   28 Jun 00 (Deposition) - 28 Jun 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   9-Strand Pseudo Beta Barrel Holo-(Acyl Carrier Protein) Acp Holo-(Acyl Carrier Protein) Synthase Acps, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. D. Parris, L. Lin, A. Tam, R. Mathew, J. Hixon, M. Stahl, C. C. Fritz, J. Seehra, W. S. Somers
Crystal Structures Of Substrate Binding To Bacillus Subtilis Holo-(Acyl Carrier Protein) Synthase Reveal A Novel Trimeric Arrangement Of Molecules Resulting In Three Active Sites.
Structure Fold. Des. V. 8 883 2000
PubMed-ID: 10997907 | Reference-DOI: 10.1016/S0969-2126(00)00178-7
(for further references see the PDB file header)

Molecule 1 - HOLO-(ACYL CARRIER PROTEIN) SYNTHASE
	Chains	:	A, B, C
	EC Number	:	2.7.8.7
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PBAD
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Mutation	:	YES
	Organism Scientific	:	BACILLUS SUBTILIS
	Organism Taxid	:	1423

Molecule 2 - ACYL CARRIER PROTEIN
	Chains	:	D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX-6P-1
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	BACILLUS SUBTILIS
	Organism Taxid	:	1423

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 4)

No.	Name	Count	Type	Full Name
1	NA	1	Ligand/Ion	SODIUM ION
2	PN2	3	Mod. Amino Acid	4'-(3-AMINOPROPIONIC) PHOSPHOPANTETHEINE

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:104 , HIS A:105 , ASP C:8 , ILE C:9 , HOH C:139	BINDING SITE FOR RESIDUE NA A 1255A

(no "SS Bond" information available for 1F80)

(no "Cis Peptide Bond" information available for 1F80)

(no "SAP(SNP)/Variant" information available for 1F80)

Asymmetric/Biological Unit (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CARRIER	PS50075	Carrier protein (CP) domain profile.	ACP_BACSU	2-77	3	D:1-73 E:1-74 F:1-73
2	PHOSPHOPANTETHEINE	PS00012	Phosphopantetheine attachment site.	ACP_BACSU	32-47	3	D:31-46 E:31-46 F:31-46

(no "Exon" information available for 1F80)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:118
 aligned with ACPS_BACSU | P96618 from UniProtKB/Swiss-Prot  Length:121

    Alignment length:118
                                    11        21        31        41        51        61        71        81        91       101       111        
           ACPS_BACSU     2 IYGIGLDITELKRIASMAGRQKRFAERILTRSELDQYYELSEKRKNEFLAGRFAAKEAFSKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKLSQAAVHVSITHTKEYAAAQVVIERL 119
               SCOP domains d1f80a_ A: Holo-(acyl carrier protein) synthase ACPS                                                                   SCOP domains
               CATH domains 1f80A00 A:2-119 4'-phosphopantetheinyl transferase                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeehhhhhh.............hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh........hhh.eeeee.....eeeee.....eeeeeeeee...eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 1f80 A   2 AYGIGLDITELKRIASMAGRQKRFAERILTRSELDQYYELSEARKNEFLAGRFAAKEAFSKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKLSQAAVHVSITHTKEYAAAQVVIERL 119
                                    11        21        31        41        51        61        71        81        91       101       111

Chain B from PDB  Type:PROTEIN  Length:118
 aligned with ACPS_BACSU | P96618 from UniProtKB/Swiss-Prot  Length:121

    Alignment length:118
                                    11        21        31        41        51        61        71        81        91       101       111        
           ACPS_BACSU     2 IYGIGLDITELKRIASMAGRQKRFAERILTRSELDQYYELSEKRKNEFLAGRFAAKEAFSKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKLSQAAVHVSITHTKEYAAAQVVIERL 119
               SCOP domains d1f80b_ B: Holo-(acyl carrier protein) synthase ACPS                                                                   SCOP domains
               CATH domains 1f80B00 B:2-119 4'-phosphopantetheinyl transferase                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeehhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh........hhh.eeeee.....eeeee......eeeeeeee...eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 1f80 B   2 AYGIGLDITELKRIASMAGRQKRFAERILTRSELDQYYELSEARKNEFLAGRFAAKEAFSKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKLSQAAVHVSITHTKEYAAAQVVIERL 119
                                    11        21        31        41        51        61        71        81        91       101       111

Chain C from PDB  Type:PROTEIN  Length:116
 aligned with ACPS_BACSU | P96618 from UniProtKB/Swiss-Prot  Length:121

    Alignment length:116
                                    12        22        32        42        52        62        72        82        92       102       112      
           ACPS_BACSU     3 YGIGLDITELKRIASMAGRQKRFAERILTRSELDQYYELSEKRKNEFLAGRFAAKEAFSKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKLSQAAVHVSITHTKEYAAAQVVIER 118
               SCOP domains d1f80c_ C: Holo-(acyl carrier protein) synthase ACPS                                                                 SCOP domains
               CATH domains 1f80C00 C:3-118 4'-phosphopantetheinyl transferase                                                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeehhhhhh.............hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh........hhhhheeee.....eeee.......eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 1f80 C   3 YGIGLDITELKRIASMAGRQKRFAERILTRSELDQYYELSEARKNEFLAGRFAAKEAFSKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKLSQAAVHVSITHTKEYAAAQVVIER 118
                                    12        22        32        42        52        62        72        82        92       102       112

Chain D from PDB  Type:PROTEIN  Length:74
 aligned with ACP_BACSU | P80643 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:74
                                    10        20        30        40        50        60        70    
            ACP_BACSU     1 MADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQ  74
               SCOP domains d1f80d_ D: Acyl carrier protein                                            SCOP domains
               CATH domains 1f80D00 D:0-73  [code=1.10.1200.10, no name defined]                       CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh...........hhhhhh....hhhhhhhhhhhhhh....hhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -CARRIER  PDB: D:1-73 UniProt: 2-77                                        PROSITE (1)
                PROSITE (2) -------------------------------PHOSPHOPANTETHEI--------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------- Transcript
                 1f80 D   0 SADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADxLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQ  73
                                     9        19        29      | 39        49        59        69    
                                                               36-PN2

Chain E from PDB  Type:PROTEIN  Length:74
 aligned with ACP_BACSU | P80643 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:74
                                    11        21        31        41        51        61        71    
            ACP_BACSU     2 ADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQN  75
               SCOP domains d1f80e_ E: Acyl carrier protein                                            SCOP domains
               CATH domains 1f80E00 E:1-74  [code=1.10.1200.10, no name defined]                       CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..........hhhhhhh...hhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) CARRIER  PDB: E:1-74 UniProt: 2-77                                         PROSITE (1)
                PROSITE (2) ------------------------------PHOSPHOPANTETHEI---------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------- Transcript
                 1f80 E   1 ADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADxLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQN  74
                                    10        20        30     |  40        50        60        70    
                                                              36-PN2

Chain F from PDB  Type:PROTEIN  Length:73
 aligned with ACP_BACSU | P80643 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:73
                                    11        21        31        41        51        61        71   
            ACP_BACSU     2 ADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQ  74
               SCOP domains d1f80f_ F: Acyl carrier protein                                           SCOP domains
               CATH domains 1f80F00 F:1-73  [code=1.10.1200.10, no name defined]                      CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh.....................hhhhhhhhhhhhhh......hhhhh..hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) CARRIER  PDB: F:1-73 UniProt: 2-77                                        PROSITE (1)
                PROSITE (2) ------------------------------PHOSPHOPANTETHEI--------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------- Transcript
                 1f80 F   1 ADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADxLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQ  73
                                    10        20        30     |  40        50        60        70   
                                                              36-PN2

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Ribosomal Protein L22; Chain A (108)

Homologous Superfamily: 4'-phosphopantetheinyl transferase (15)

Bacillus subtilis. Organism_taxid: 1423. (3)

1a	1f80A00	A:2-119
1b	1f80B00	B:2-119
1c	1f80C00	C:3-118

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A (155)

Homologous Superfamily: [code=1.10.1200.10, no name defined] (34)

Bacillus subtilis. Organism_taxid: 1423. (2)

2a	1f80D00	D:0-73
2b	1f80E00	E:1-74
2c	1f80F00	F:1-73

(no "Pfam Domain" information available for 1F80)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C (ACPS_BACSU | P96618)

molecular function
	GO:0008897	holo-[acyl-carrier-protein] synthase activity	Catalysis of the reaction: CoA + substrate-serine = adenosine 3',5'-bisphosphate + substrate-serine-4'-phosphopantetheine. The transfer of the 4'-phosphopantetheine (Ppant) co-factor from coenzyme A to the hydroxyl side chain of the serine residue of acyl- or peptidyl-carrier protein (ACP or PCP) to convert them from the apo to the holo form.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006633	fatty acid biosynthetic process	The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
	GO:0006631	fatty acid metabolic process	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain D,E,F (ACP_BACSU | P80643)

molecular function
	GO:0000036	ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	Interacting selectively and non-covalently with the attachment site of the phosphopantetheine prosthetic group of an acyl carrier protein (ACP) as part of the process of fatty acid biosynthesis.
biological process
	GO:0006633	fatty acid biosynthetic process	The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
	GO:0006631	fatty acid metabolic process	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1f80)

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	1f80
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	ACP_BACSU \| P80643
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	2.7.8.7
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UniProtKB/Swiss-Prot
	ACPS_BACSU \| P96618	:	1f7l 1f7t
	ACP_BACSU \| P80643	:	1hy8 2x2b

1f7l	1F7L, DEPOSITED 6/27/2000, CONTAINS THE SAME PROTEIN IN COMPLEX WITH COENZYME A
1f7t	1F7T, DEPOSITED 6/27/2000, CONTAINS THE SAME PROTEIN WITH AN EMPTY ACTIVE SITE

Description

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Ligands, Modified Residues, Ions (2, 4)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Gene Ontology (9, 13)

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