Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF A METALLO-B-LACTAMASE
 
Authors :  F. Garces, F. J. Fernandez, E. Penya-Soler, J. Aguilar, L. Baldoma, M. Coll, J. Badia, M. C. Vega
Date :  16 Nov 09  (Deposition) - 14 Apr 10  (Release) - 19 May 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Garces, F. J. Fernandez, C. Montella, E. Penya-Soler, R. Prohens, J. Aguilar, L. Baldoma, M. Coll, J. Badia, M. C. Vega
Molecular Architecture Of The Mn(2+)Dependent Lactonase Ulag Reveals An Rnase-Like Metallo-Beta- Lactamase Fold And A Novel Quaternary Structure.
J. Mol. Biol. V. 398 715 2010
PubMed-ID: 20359483  |  Reference-DOI: 10.1016/J.JMB.2010.03.041
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - L-ASCORBATE-6-PHOSPHATE LACTONASE ULAG
    Chains: A, B, D, E
    EC Number: 3.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: METALLO-B-LACTAMASE, L-ASCORBATE UTILIZATION PROTEIN G
 
Molecule 2 - L-ASCORBATE-6-PHOSPHATE LACTONASE ULAG
    Chains: C, F
    EC Number: 3.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: METALLO-B-LACTAMASE, L-ASCORBATE UTILIZATION PROTEIN G

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 16)

Asymmetric/Biological Unit (4, 16)
No.NameCountTypeFull Name
1FLC1Ligand/IonCITRATE ANION
2FME2Mod. Amino AcidN-FORMYLMETHIONINE
3GOL7Ligand/IonGLYCEROL
4MN6Ligand/IonMANGANESE (II) ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:121 , HIS A:122 , ASP A:226 , HIS A:281BINDING SITE FOR RESIDUE MN A1341
02AC2SOFTWAREARG A:296 , GLU A:300 , LYS A:303 , PHE A:330 , HOH A:2038 , LYS D:303 , ASP D:304BINDING SITE FOR RESIDUE GOL A1342
03AC3SOFTWAREASN A:25 , GLU A:29 , ILE A:107 , ARG A:108 , GLN A:109BINDING SITE FOR RESIDUE GOL A1343
04AC4SOFTWAREASP B:121 , HIS B:122 , ASP B:226 , HIS B:281BINDING SITE FOR RESIDUE MN B1338
05AC5SOFTWAREVAL B:169BINDING SITE FOR RESIDUE GOL B1339
06AC6SOFTWAREHIS C:119 , ASP C:121 , HIS C:122 , ASP C:226 , HIS C:281BINDING SITE FOR RESIDUE MN C1338
07AC7SOFTWAREASP C:168 , VAL C:169 , HOH C:2036BINDING SITE FOR RESIDUE GOL C1339
08AC8SOFTWAREASP D:121 , HIS D:122 , ASP D:226 , HIS D:281BINDING SITE FOR RESIDUE MN D1340
09AC9SOFTWAREVAL D:169 , LYS D:171 , HOH D:2050 , HOH D:2051 , HOH D:2052BINDING SITE FOR RESIDUE FLC D1341
10BC1SOFTWAREARG B:305 , GLN C:289 , GLN D:293 , GLN D:316 , GLU D:331BINDING SITE FOR RESIDUE GOL D1342
11BC2SOFTWAREHIS E:119 , ASP E:121 , HIS E:122 , ASP E:226 , HIS E:281BINDING SITE FOR RESIDUE MN E1339
12BC3SOFTWARELYS C:307 , PHE E:313 , LYS E:320 , ASP E:326 , ASN E:329 , GLU E:331 , TYR E:332 , HIS E:333BINDING SITE FOR RESIDUE GOL E1340
13BC4SOFTWAREASP F:121 , HIS F:122 , ASP F:226 , HIS F:281BINDING SITE FOR RESIDUE MN F1339
14BC5SOFTWAREGLN A:316 , GLN F:289 , ALA F:290 , PRO F:292BINDING SITE FOR RESIDUE GOL F1340

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WYM)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Phe A:17 -Pro A:18
2Trp A:323 -Pro A:324
3Phe B:17 -Pro B:18
4Trp B:323 -Pro B:324
5Phe C:17 -Pro C:18
6Trp C:323 -Pro C:324
7Phe D:17 -Pro D:18
8Trp D:323 -Pro D:324
9Phe E:17 -Pro E:18
10Trp E:323 -Pro E:324
11Phe F:17 -Pro F:18
12Trp F:323 -Pro F:324

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WYM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WYM)

(-) Exons   (0, 0)

(no "Exon" information available for 2WYM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
 aligned with ULAG_ECOLI | P39300 from UniProtKB/Swiss-Prot  Length:354

    Alignment length:340
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340
           ULAG_ECOLI     1 MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHYPRGFDD 340
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wymA00 A:1-340 Metallo-beta-lactamase, chain A                                                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh....hhhhhhhhhh......eeeeeee..eeeee.....eeee............-----------------.............hhhhh....eee....hhhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhh.hhh.eee.....eeee..eeeeeee...--------------------.....eeeeee....eeee........hhhhhhhhh...eeeee............hhhhhhhhhhhh...eeeee.....hhhh..hhhhhhhhhhhh.......ee.......eeee................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wym A   1 MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCVDFWCGTGKQSHG-----------------KLQPNLRTTPFVLDPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAFD--------------------MDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHYPRGFDD 340
                                    10        20        30        40        50        60        70 |       -        90       100       110       120       130       140       150       160       170       180   |     -         -    |  210       220       230       240       250       260       270       280       290       300       310       320       330       340
                                                                                                  72                90                                                                                           184                  205                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:300
 aligned with ULAG_ECOLI | P39300 from UniProtKB/Swiss-Prot  Length:354

    Alignment length:337
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       
           ULAG_ECOLI     1 MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHYPRG 337
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wymB00 B:1-337 Metallo-beta-lactamase, chain A                                                                                                                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh....hhhhhhhhhh......eeeee.....eeee.....eeee............------------------............hhhhh....eee....hhhhhhhhhhhhhhhhh.....eeehhhhhhhhhhh..hhh.eee.....eeee..eeeeeee...-------------------......eeeeeee..eeeee.......hhhhhhhhhh...eeeee............hhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhh.......ee.......eeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wym B   1 MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCVDFWCGTGKQSHG------------------LQPNLRTTPFVLDPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAFD-------------------GMDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHYPRG 337
                                    10        20        30        40        50        60        70 |       -         -|      100       110       120       130       140       150       160       170       180   |     -         -   |   210       220       230       240       250       260       270       280       290       300       310       320       330       
                                                                                                  72                 91                                                                                          184                 204                                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:298
 aligned with ULAG_ECOLI | P39300 from UniProtKB/Swiss-Prot  Length:354

    Alignment length:337
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       
           ULAG_ECOLI     1 MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHYPRG 337
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -2wymC00 C:2-337 Metallo-beta-lactamase, chain A                                                                                                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh....hhhhhhhhhh......eeeee.....eeee.....eeee............-------------------...........hhhhh....eee.........hhhhhhhhhhhh.....eeehhhhhhhhhhhh.....eee.....eeee..eeeeeee..--------------------......eeeeee....eeee.......hhhhhhhhhh...eeeee............hhhhhhhhhhhh...eeeee.....hhhh..hhhhhhhhhhhh.......ee.......eeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wym C   1 mSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCVDFWCGTGKQSHG-------------------QPNLRTTPFVLDPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAF--------------------GMDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHYPRG 337
                            |       10        20        30        40        50        60        70 |       -         - |     100       110       120       130       140       150       160       170       180  |      -         -   |   210       220       230       240       250       260       270       280       290       300       310       320       330       
                            1-FME                                                                 72                  92                                                                                        183                  204                                                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:300
 aligned with ULAG_ECOLI | P39300 from UniProtKB/Swiss-Prot  Length:354

    Alignment length:339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         
           ULAG_ECOLI     1 MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHYPRGFD 339
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wymD00 D:1-339 Metallo-beta-lactamase, chain A                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh....hhhhhhhhhh......eeeeeee..eeeee.....eeee............-------------------...........hhhhh....eee....hhhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhh.hhh.eee.....eeee..eeeeeee..--------------------hhhhh.eeeeeee..eeeee.......hhhhhhhhhh...eeeee............hhhhhhhhhhhh...eeeee.....hhhh..hhhhhhhhhhhhhhhh...ee.......eeee................ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wym D   1 MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCVDFWCGTGKQSHG-------------------QPNLRTTPFVLDPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAF--------------------GMDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHYPRGFD 339
                                    10        20        30        40        50        60        70 |       -         - |     100       110       120       130       140       150       160       170       180  |      -         -   |   210       220       230       240       250       260       270       280       290       300       310       320       330         
                                                                                                  72                  92                                                                                        183                  204                                                                                                                                       


Chain E from PDB  Type:PROTEIN  Length:300
 aligned with ULAG_ECOLI | P39300 from UniProtKB/Swiss-Prot  Length:354

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
           ULAG_ECOLI     1 MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHYPRGF 338
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wymE00 E:1-338 Metallo-beta-lactamase, chain A                                                                                                                                                                                                                                                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh....hhhhhhhhh.......eeeeeee..eeeeee....eeee............------------------............hhhhh....eee....hhhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhh.hhh.eee.....eeee..eeeeeee...--------------------.....eeeeeee..eeeee.......hhhhhhhhhh...eeeee............hhhhhhhhhhhhh..eeeee.....hhhh..hhhhhhhhhhhh.......ee.......eeee............... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wym E   1 MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCVDFWCGTGKQSHG------------------LQPNLRTTPFVLDPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAFD--------------------MDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHYPRGF 338
                                    10        20        30        40        50        60        70 |       -         -|      100       110       120       130       140       150       160       170       180   |     -         -    |  210       220       230       240       250       260       270       280       290       300       310       320       330        
                                                                                                  72                 91                                                                                          184                  205                                                                                                                                     


Chain F from PDB  Type:PROTEIN  Length:301
 aligned with ULAG_ECOLI | P39300 from UniProtKB/Swiss-Prot  Length:354

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
           ULAG_ECOLI     1 MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHYPRGF 338
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -2wymF00 F:2-338 Metallo-beta-lactamase, chain A                                                                                                                                                                                                                                                                                                   CATH domains
           Pfam domains (1) -------------------------------------------------------Lactamase_B_2-2wy                 mF01 F:56-282                                                                                                                                                                                    -------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------Lactamase_B_2-2wy                 mF02 F:56-282                                                                                                                                                                                    -------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------Lactamase_B_2-2wy                 mF03 F:56-282                                                                                                                                                                                    -------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -------------------------------------------------------Lactamase_B_2-2wy                 mF04 F:56-282                                                                                                                                                                                    -------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) -------------------------------------------------------Lactamase_B_2-2wy                 mF05 F:56-282                                                                                                                                                                                    -------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) -------------------------------------------------------Lactamase_B_2-2wy                 mF06 F:56-282                                                                                                                                                                                    -------------------------------------------------------- Pfam domains (6)
         Sec.struct. author .hhhhhhhhhhhhhhhh....hhhhhhhhh.......eeeeeee..eeeee.....eeee............-----------------.............hhhhh....eee.........hhhhhhhhhhhh.....eeehhhhhhhhhhhh.....eee.....eeee..eeeeee.....--------------------.....eeeee....eeee.......hhhhhhhhhh...eeeee............hhhhhhhhhhhh...eeeee.....hhhh..hhhhhhhhhhhh.......ee.......eeee............... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wym F   1 mSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLGCTGIWLKSEGGTNVCVDFWCGTGKQSHG-----------------KLQPNLRTTPFVLDPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAFDR--------------------DDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHYPRGF 338
                            |       10        20        30        40        50        60        70 |       -        90       100       110       120       130       140       150       160       170       180    |    -         -     | 210       220       230       240       250       260       270       280       290       300       310       320       330        
                            1-FME                                                                 72                90                                                                                            185                  206
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WYM)

(-) CATH Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Clan: Metallo-HOrase (67)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (ULAG_ECOLI | P39300)
molecular function
    GO:0035460    L-ascorbate 6-phosphate lactonase activity    Catalysis of the reaction: L-ascorbate 6-phosphate + H2O = 3-keto-L-gulonate 6-phosphate.
    GO:0052689    carboxylic ester hydrolase activity    Catalysis of the hydrolysis of a carboxylic ester bond.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0030145    manganese ion binding    Interacting selectively and non-covalently with manganese (Mn) ions.
biological process
    GO:0019854    L-ascorbic acid catabolic process    The chemical reactions and pathways resulting in the breakdown of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    FLC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    FME  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Phe A:17 - Pro A:18   [ RasMol ]  
    Phe B:17 - Pro B:18   [ RasMol ]  
    Phe C:17 - Pro C:18   [ RasMol ]  
    Phe D:17 - Pro D:18   [ RasMol ]  
    Phe E:17 - Pro E:18   [ RasMol ]  
    Phe F:17 - Pro F:18   [ RasMol ]  
    Trp A:323 - Pro A:324   [ RasMol ]  
    Trp B:323 - Pro B:324   [ RasMol ]  
    Trp C:323 - Pro C:324   [ RasMol ]  
    Trp D:323 - Pro D:324   [ RasMol ]  
    Trp E:323 - Pro E:324   [ RasMol ]  
    Trp F:323 - Pro F:324   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2wym
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  ULAG_ECOLI | P39300
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.1.1.-
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  ULAG_ECOLI | P39300
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ULAG_ECOLI | P39300: 2wyl

(-) Related Entries Specified in the PDB File

2wyl APO STRUCTURE OF A METALLO-B-LACTAMASE