2WY6 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CLOSTRIDIUM PERFRINGENS ALPHA-TOXIN STRAIN NCTC8237 MUTANT T74I

Authors :   S. G. Vachieri, C. E. Naylor, A. K. Basak

Date :   12 Nov 09 (Deposition) - 24 Nov 09 (Release) - 11 May 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.20

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Cytolysis, Hydrolase, Hemolysis, Membrane Binding, Virulence, Gangrene Determinant, C2 Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. G. Vachieri, G. C. Clark, A. Alape-Giron, M. Flores-Diaz, N. Justin, C. E. Naylor, R. W. Titball, A. K. Basak
Comparison Of A Nontoxic Variant Of Clostridium Perfringens [Alpha]-Toxin With The Toxic Wild-Type Strain
Acta Crystallogr. , Sect. D V. 66 1067 2011
PubMed-ID: 20944240 | Reference-DOI: 10.1107/S090744491003369X
(for further references see the PDB file header)

Molecule 1 - PHOSPHOLIPASE C
	Atcc	:	19408
	Chains	:	A, B, C
	EC Number	:	3.1.4.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Cell Line	:	JM109
	Expression System Plasmid	:	PT7BLUE
	Expression System Taxid	:	562
	Mutation	:	YES
	Organism Scientific	:	CLOSTRIDIUM PERFRINGENS
	Organism Taxid	:	1502
	Strain	:	NCTC8237
	Synonym	:	PLC, PHOSPHATIDYLCHOLINE CHOLINEPHOSPHOHYDROLASE, ALPHA-TOXIN, HEMOLYSIN, LECITHINASE

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 24)

No.	Name	Count	Type	Full Name
1	CA	4	Ligand/Ion	CALCIUM ION
2	CD	15	Ligand/Ion	CADMIUM ION
3	GOL	2	Ligand/Ion	GLYCEROL
4	ZN	3	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CD	-1	Ligand/Ion	CADMIUM ION
3	GOL	1	Ligand/Ion	GLYCEROL
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CD	-1	Ligand/Ion	CADMIUM ION
3	GOL	-1	Ligand/Ion	GLYCEROL
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CD	-1	Ligand/Ion	CADMIUM ION
3	GOL	1	Ligand/Ion	GLYCEROL
4	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TRP A:1 , HIS A:11 , ASP A:130 , CD A:1372	BINDING SITE FOR RESIDUE ZN A1371
02	AC2	SOFTWARE	ASP A:56 , HIS A:68 , HIS A:126 , ASP A:130 , ZN A:1371	BINDING SITE FOR RESIDUE CD A1372
03	AC3	SOFTWARE	HIS A:136 , HIS A:148 , GLU A:152	BINDING SITE FOR RESIDUE CD A1373
04	AC4	SOFTWARE	GLU A:157 , ASP A:215	BINDING SITE FOR RESIDUE CD A1374
05	AC5	SOFTWARE	GLU A:291 , HIS B:46 , GLU B:47	BINDING SITE FOR RESIDUE CD B1371
06	AC6	SOFTWARE	ASP A:293 , ASN A:294 , GLU B:43	BINDING SITE FOR RESIDUE CA A1375
07	AC7	SOFTWARE	GLU B:160 , HIS C:207 , TYR C:219	BINDING SITE FOR RESIDUE GOL C1371
08	AC8	SOFTWARE	HIS A:207 , ASP A:216 , TYR A:219	BINDING SITE FOR RESIDUE GOL A1376
09	AC9	SOFTWARE	TRP B:1 , HIS B:11 , HIS B:126 , ASP B:130 , CD B:1373	BINDING SITE FOR RESIDUE ZN B1372
10	BC1	SOFTWARE	ASP B:56 , HIS B:68 , HIS B:126 , ASP B:130 , ZN B:1372	BINDING SITE FOR RESIDUE CD B1373
11	BC2	SOFTWARE	HIS B:136 , HIS B:148 , GLU B:152	BINDING SITE FOR RESIDUE CD B1374
12	BC3	SOFTWARE	HIS B:212 , SER B:213 , ASP B:216	BINDING SITE FOR RESIDUE CD B1375
13	BC4	SOFTWARE	GLU B:291 , ASP B:293 , HIS C:46 , GLU C:47	BINDING SITE FOR RESIDUE CD B1376
14	BC5	SOFTWARE	ASP B:293 , ASN B:294 , GLY B:296 , ASP B:298 , LYS C:115	BINDING SITE FOR RESIDUE CA B1377
15	BC6	SOFTWARE	ASP B:269 , GLY B:271 , ASP B:336 , ALA B:337	BINDING SITE FOR RESIDUE CA B1378
16	BC7	SOFTWARE	ASP B:63 , GLU C:43	BINDING SITE FOR RESIDUE CD B1379
17	BC8	SOFTWARE	HIS B:241	BINDING SITE FOR RESIDUE CD B1380
18	BC9	SOFTWARE	TRP C:1 , HIS C:11 , ASP C:130 , CD C:1373	BINDING SITE FOR RESIDUE ZN C1372
19	CC1	SOFTWARE	ASP C:56 , HIS C:68 , HIS C:126 , ASP C:130 , ZN C:1372	BINDING SITE FOR RESIDUE CD C1373
20	CC2	SOFTWARE	HIS C:136 , HIS C:148 , GLU C:152	BINDING SITE FOR RESIDUE CD C1374
21	CC3	SOFTWARE	ASP C:216	BINDING SITE FOR RESIDUE CD C1375
22	CC4	SOFTWARE	HIS A:46 , GLU A:47 , GLU C:291 , ASP C:293	BINDING SITE FOR RESIDUE CD C1376
23	CC5	SOFTWARE	LYS A:115 , ASP C:293 , ASN C:294 , GLY C:296 , ASP C:298	BINDING SITE FOR RESIDUE CA C1377
24	CC6	SOFTWARE	HIS C:241	BINDING SITE FOR RESIDUE CD C1378

(no "SS Bond" information available for 2WY6)

(no "Cis Peptide Bond" information available for 2WY6)

(no "SAP(SNP)/Variant" information available for 2WY6)

Asymmetric Unit (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROKAR_ZN_DEPEND_PLPC_1	PS00384	Prokaryotic zinc-dependent phospholipase C signature.	PHLC_CLOP1	154-167	3	A:126-139 B:126-139 C:126-139
2	PLAT	PS50095	PLAT domain profile.	PHLC_CLOP1	284-398	3	A:256-370 B:256-370 C:256-370

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROKAR_ZN_DEPEND_PLPC_1	PS00384	Prokaryotic zinc-dependent phospholipase C signature.	PHLC_CLOP1	154-167	1	A:126-139 - -
2	PLAT	PS50095	PLAT domain profile.	PHLC_CLOP1	284-398	1	A:256-370 - -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROKAR_ZN_DEPEND_PLPC_1	PS00384	Prokaryotic zinc-dependent phospholipase C signature.	PHLC_CLOP1	154-167	1	- B:126-139 -
2	PLAT	PS50095	PLAT domain profile.	PHLC_CLOP1	284-398	1	- B:256-370 -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROKAR_ZN_DEPEND_PLPC_1	PS00384	Prokaryotic zinc-dependent phospholipase C signature.	PHLC_CLOP1	154-167	1	- - C:126-139
2	PLAT	PS50095	PLAT domain profile.	PHLC_CLOP1	284-398	1	- - C:256-370

(no "Exon" information available for 2WY6)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:361
 aligned with PHLC_CLOP1 | Q0TV31 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:370
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398
           PHLC_CLOP1    29 WDGKIDGTGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDTDNNFSKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPYHPANVTAVDSAGHVKFETFAEERKEQYKINTAGCKTNEAFYTDILKNKDFNAWSKEYARGFAKTGKSIYYSHASMSHSWDDWDYAAKVTLANSQKGTAGYIYRFLHDVSEGNDPSVGKNVKELVAYISTSGEKDAGTDDYMYFGIKTKDGKTQEWEMDNPGNDFMTGSKDTYTFKLKDENLKIDDIQNMWIRKRKYTAFSDAYKPENIKIIANGKVVVDKDINEWISGNSTYNIK 398
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wy6A01 A:1-249 P1 Nuclease                                                                                                                                                                                                                                 2wy6A02 A:253-370 Lipoxygenase-1                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh.....------.hhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhh.........hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......---....eeeeeeee..........eeeeeeee....eeeee............eeeeeee......hhh.eeeeeeeee..........eeeeeee....eeeeee.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------PROKAR_ZN_DEPE--------------------------------------------------------------------------------------------------------------------PLAT  PDB: A:256-370 UniProt: 284-398                                                                               PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wy6 A   1 WDGKIDGTGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDI------DNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPYHPANVTAVDSAGHVKFETFAEERKEQYKINTAGCKTNEAFYTDILKNKDFNAWSKEYARGFAKTGKSIYYSHASMSHSWDDWDYAAKVTLANSQKGTAGYIYRFLHDVSEGNDP---KNVKELVAYISTSGEKDAGTDDYMYFGIKTKDGKTQEWEMDNPGNDFMTGSKDTYTFKLKDENLKIDDIQNMWIRKRKYTAFPDAYKPENIKIIANGKVVVDKDINEWISGNSTYNIK 370
                                    10        20        30        40        50        60        70   |     -|       90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        |-  |    260       270       280       290       300       310       320       330       340       350       360       370
                                                                                                    74     81                                                                                                                                                                     249 253

Chain B from PDB  Type:PROTEIN  Length:365
 aligned with PHLC_CLOP1 | Q0TV31 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:370
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398
           PHLC_CLOP1    29 WDGKIDGTGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDTDNNFSKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPYHPANVTAVDSAGHVKFETFAEERKEQYKINTAGCKTNEAFYTDILKNKDFNAWSKEYARGFAKTGKSIYYSHASMSHSWDDWDYAAKVTLANSQKGTAGYIYRFLHDVSEGNDPSVGKNVKELVAYISTSGEKDAGTDDYMYFGIKTKDGKTQEWEMDNPGNDFMTGSKDTYTFKLKDENLKIDDIQNMWIRKRKYTAFSDAYKPENIKIIANGKVVVDKDINEWISGNSTYNIK 398
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wy6B01 B:1-250 P1 Nuclease                                                                                                                                                                                                                               2wy6B02 B:251-370 Lipoxygenase-1                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh......-----.hhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhh..hhhhhh.........hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeeee..........eeeeeee.....eeeee............eeeeeee......hhhhh.eeeeeee..........eeeeeee....eeeeee.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------PROKAR_ZN_DEPE--------------------------------------------------------------------------------------------------------------------PLAT  PDB: B:256-370 UniProt: 284-398                                                                               PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wy6 B   1 WDGKIDGTGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDID-----DNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPYHPANVTAVDSAGHVKFETFAEERKEQYKINTAGCKTNEAFYTDILKNKDFNAWSKEYARGFAKTGKSIYYSHASMSHSWDDWDYAAKVTLANSQKGTAGYIYRFLHDVSEGNDPSVGKNVKELVAYISTSGEKDAGTDDYMYFGIKTKDGKTQEWEMDNPGNDFMTGSKDTYTFKLKDENLKIDDIQNMWIRKRKYTAFPDAYKPENIKIIANGKVVVDKDINEWISGNSTYNIK 370
                                    10        20        30        40        50        60        70    |    -|       90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370
                                                                                                     75    81

Chain C from PDB  Type:PROTEIN  Length:358
 aligned with PHLC_CLOP1 | Q0TV31 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:370
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398
           PHLC_CLOP1    29 WDGKIDGTGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDTDNNFSKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPYHPANVTAVDSAGHVKFETFAEERKEQYKINTAGCKTNEAFYTDILKNKDFNAWSKEYARGFAKTGKSIYYSHASMSHSWDDWDYAAKVTLANSQKGTAGYIYRFLHDVSEGNDPSVGKNVKELVAYISTSGEKDAGTDDYMYFGIKTKDGKTQEWEMDNPGNDFMTGSKDTYTFKLKDENLKIDDIQNMWIRKRKYTAFSDAYKPENIKIIANGKVVVDKDINEWISGNSTYNIK 398
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wy6C01 C:1-247 P1 Nuclease                                                                                                                                                                                                                                2wy6C02 C:252-370 Lipoxygenase-1                                                                                        CATH domains
           Pfam domains (1) ---------Zn_dep_PLPC-2wy6C04 C:10-227                                                                                                                                                                                              --------------------    ------PLAT-2wy6C01 C:258-370                                                                                            Pfam domains (1)
           Pfam domains (2) ---------Zn_dep_PLPC-2wy6C05 C:10-227                                                                                                                                                                                              --------------------    ------PLAT-2wy6C02 C:258-370                                                                                            Pfam domains (2)
           Pfam domains (3) ---------Zn_dep_PLPC-2wy6C06 C:10-227                                                                                                                                                                                              --------------------    ------PLAT-2wy6C03 C:258-370                                                                                            Pfam domains (3)
         Sec.struct. author ........hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh....--------hhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhh..hhhhhh.........hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....----.....eeeeeeee..........eeeeeee.....eeeee............eeeeeee......hhhhh...eeeee..........eeeeeee....eeeeee.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------PROKAR_ZN_DEPE--------------------------------------------------------------------------------------------------------------------PLAT  PDB: C:256-370 UniProt: 284-398                                                                               PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wy6 C   1 WDGKIDGTGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPD--------NSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPYHPANVTAVDSAGHVKFETFAEERKEQYKINTAGCKTNEAFYTDILKNKDFNAWSKEYARGFAKTGKSIYYSHASMSHSWDDWDYAAKVTLANSQKGTAGYIYRFLHDVSEGN----GKNVKELVAYISTSGEKDAGTDDYMYFGIKTKDGKTQEWEMDNPGNDFMTGSKDTYTFKLKDENLKIDDIQNMWIRKRKYTAFPDAYKPENIKIIANGKVVVDKDINEWISGNSTYNIK 370
                                    10        20        30        40        50        60        70  |      - |      90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240      |  - |     260       270       280       290       300       310       320       330       340       350       360       370
                                                                                                   73       82                                                                                                                                                                  247  252

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2WY6)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: P1 Nuclease (17)

Homologous Superfamily: P1 Nuclease (17)

Clostridium perfringens. Organism_taxid: 1502. Strain: nctc8237. (2)

1a	2wy6B01	B:1-250
1b	2wy6A01	A:1-249
1c	2wy6C01	C:1-247

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Lipoxygenase-1 (46)

Homologous Superfamily: Lipoxygenase-1 (44)

Clostridium perfringens. Organism_taxid: 1502. Strain: nctc8237. (2)

2a	2wy6B02	B:251-370
2b	2wy6C02	C:252-370
2c	2wy6A02	A:253-370

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: PLAT (25)

Family: PLAT (25)

Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) (4)

1a	PLAT-2wy6C01	C:258-370
1b	PLAT-2wy6C02	C:258-370
1c	PLAT-2wy6C03	C:258-370

Clan: PhosC-NucP1 (7)

Family: Zn_dep_PLPC (7)

Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) (4)

2a	Zn_dep_PLPC-2wy6C04	C:10-227
2b	Zn_dep_PLPC-2wy6C05	C:10-227
2c	Zn_dep_PLPC-2wy6C06	C:10-227

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (PHLC_CLOP1 | Q0TV31)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016788	hydrolase activity, acting on ester bonds	Catalysis of the hydrolysis of any ester bond.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0034480	phosphatidylcholine phospholipase C activity	Catalysis of the reaction: phosphatidylcholine + H2O = 1,2-diacylglycerol + a choline phosphate.
	GO:0004629	phospholipase C activity	Catalysis of the reaction: a phospholipid + H2O = 1,2-diacylglycerol + a phosphatidate.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0019835	cytolysis	The rupture of cell membranes and the loss of cytoplasm.
	GO:0044179	hemolysis in other organism	The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another.
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2wy6)

Biological Units
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Access by PDB/NDB ID
	2wy6
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
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	PHLC_CLOP1 \| Q0TV31
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	3.1.4.3
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		Domain Information	:	XDom
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	PHLC_CLOP1 \| Q0TV31
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UniProtKB/Swiss-Prot
	PHLC_CLOP1 \| Q0TV31	:	1ca1 1gyg 1qm6 1qmd 1sb4 2wxt 2wxu

1qm6	CLOSED FORM OF C. PERFRINGENS ALPHA-TOXIN STRAIN NCTC8237
1qmd	CALCIUM BOUND CLOSED FORM ALPHA-TOXIN FROM CLOSTRIDIUM PERFRINGENS
2wxt	CLOSTRIDIUM PERFRINGENS ALPHA-TOXIN STRAIN NCTC8237
2wxu	CLOSTRIDIUM PERFRINGENS ALPHA-TOXIN STRAIN NCTC8237 MUTANT T74I

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 24)

Sites (24, 24)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 6)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (2, 6)

Pfam Domains (2, 6)

Gene Ontology (10, 10)

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Still Images

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File