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(-) Description

Title :  PHOSPHOLIPASE C FROM CLOSTRIDIUM PERFRINGENS
 
Authors :  P. J. Magesh
Date :  10 Feb 04  (Deposition) - 24 Feb 04  (Release) - 24 Feb 04  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Zinc Phospholipase C, Gangrene Determinant, C2 Domain, Ca And Membrane Binding, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Magesh
Phospholipase C From Clostridium Perfringens
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHOSPHOLIPASE C
    Chains: A
    EC Number: 3.1.4.3
    Organism Common: BACTERIA
    Organism Scientific: CLOSTRIDIUM PERFRINGENS
    Synonym: PLC, PHOSPHATIDYLCHOLINE CHOLINEPHOSPHOHYDROLASE, ALPHA-TOXIN, HEMOLYSIN, LECITHINASE

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1SB4)

(-) Sites  (0, 0)

(no "Site" information available for 1SB4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SB4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SB4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (15, 15)

Theoretical Model (15, 15)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_PHLC1_CLOPE_007 *V43APHLC1_CLOPE  ---  ---AV43A
02UniProtVAR_PHLC1_CLOPE_008 *V47IPHLC1_CLOPE  ---  ---AV47I
03UniProtVAR_PHLC1_CLOPE_009 *L54MPHLC1_CLOPE  ---  ---AL54M
04UniProtVAR_PHLC1_CLOPE_010 *E71DPHLC1_CLOPE  ---  ---AE71D
05UniProtVAR_PHLC1_CLOPE_011 *D91NPHLC1_CLOPE  ---  ---AD91N
06UniProtVAR_PHLC1_CLOPE_012 *D103NPHLC1_CLOPE  ---  ---AD103N
07UniProtVAR_PHLC1_CLOPE_013 *H176YPHLC1_CLOPE  ---  ---AH176Y
08UniProtVAR_PHLC1_CLOPE_014 *A195VPHLC1_CLOPE  ---  ---AA195V
09UniProtVAR_PHLC1_CLOPE_015 *D202APHLC1_CLOPE  ---  ---AD202A
10UniProtVAR_PHLC1_CLOPE_016 *A205TPHLC1_CLOPE  ---  ---AA205T
11UniProtVAR_PHLC1_CLOPE_017 *K281NPHLC1_CLOPE  ---  ---AK281N
12UniProtVAR_PHLC1_CLOPE_018 *T329APHLC1_CLOPE  ---  ---AT329A
13UniProtVAR_PHLC1_CLOPE_019 *P363SPHLC1_CLOPE  ---  ---AP363S
14UniProtVAR_PHLC1_CLOPE_020 *I373LPHLC1_CLOPE  ---  ---AI373L
15UniProtVAR_PHLC1_CLOPE_021 *I373VPHLC1_CLOPE  ---  ---AI373V
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 2)

Theoretical Model (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROKAR_ZN_DEPEND_PLPC_1PS00384 Prokaryotic zinc-dependent phospholipase C signature.PHLC_CLOP1154-167  1A:154-167
PHLC1_CLOPE154-167  1A:154-167
2PLATPS50095 PLAT domain profile.PHLC_CLOP1284-398  1A:284-398
PHLC1_CLOPE284-398  1A:284-398

(-) Exons   (0, 0)

(no "Exon" information available for 1SB4)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:370
 aligned with PHLC1_CLOPE | P0C216 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:370
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398
          PHLC1_CLOPE    29 WDGKIDGTGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDTDNNFSKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPYHPANVTAVDSAGHVKFETFAEERKEQYKINTAGCKTNEDFYADILKNKDFNAWSKEYARGFAKTGKSIYYSHASMSHSWDDWDYAAKVTLANSQKGTAGYIYRFLHDVSEGNDPSVGKNVKELVAYISTSGEKDAGTDDYMYFGIKTKDGKTQEWEMDNPGNDFMTGSKDTYTFKLKDENLKIDDIQNMWIRKRKYTAFPDAYKPENIKIIANGKVVVDKDINEWISGNSTYNIK 398
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...eehhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..................................hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhhhhhh.........hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeeeee..........eeeeeeee...eeeeee............eeeeeee......hhh.eeeeeeeee..........eeeeeeee..eeeeeee........eeee.. Sec.struct. author
             SAPs(SNPs) (1) --------------A---I------M----------------D-------------------N-----------N------------------------------------------------------------------------Y------------------V------A--T---------------------------------------------------------------------------N-----------------------------------------------A---------------------------------S---------L------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V------------------------- SAPs(SNPs) (2)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------PROKAR_ZN_DEPE--------------------------------------------------------------------------------------------------------------------PLAT  PDB: A:284-398 UniProt: 284-398                                                                               PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sb4 A  29 WDGKIDGTGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDTDNNFSKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPYHPANVTAVDSAGHVKFETFAEERKEQYKINTAGCKTNEDFYADILKNKDFNAWSKEYARGFAKTGKSIYYSHASMSHSWDDWDYAAKVTLANSQKGTAGYIYRFLHDVSEGNDPSVGKNVKELVAYISTSGEKDAGTDDYMYFGIKTKDGKTQEWEMDNPGNDFMTGSKDTYTFKLKDENLKIDDIQNMWIRKRKYTAFPDAYKPENIKIIANGKVVVDKDINEWISGNSTYNIK 398
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398


Chain A from PDB  Type:PROTEIN  Length:370
 aligned with PHLC_CLOP1 | Q0TV31 from UniProtKB/Swiss-Prot  Length:398

    Alignment length:370
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398
           PHLC_CLOP1    29 WDGKIDGTGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDTDNNFSKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPYHPANVTAVDSAGHVKFETFAEERKEQYKINTAGCKTNEAFYTDILKNKDFNAWSKEYARGFAKTGKSIYYSHASMSHSWDDWDYAAKVTLANSQKGTAGYIYRFLHDVSEGNDPSVGKNVKELVAYISTSGEKDAGTDDYMYFGIKTKDGKTQEWEMDNPGNDFMTGSKDTYTFKLKDENLKIDDIQNMWIRKRKYTAFSDAYKPENIKIIANGKVVVDKDINEWISGNSTYNIK 398
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...eehhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..................................hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhhhhhh.........hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeeeee..........eeeeeeee...eeeeee............eeeeeee......hhh.eeeeeeeee..........eeeeeeee..eeeeeee........eeee.. Sec.struct. author
             SAPs(SNPs) (1) --------------A---I------M----------------D-------------------N-----------N------------------------------------------------------------------------Y------------------V------A--T---------------------------------------------------------------------------N-----------------------------------------------A---------------------------------S---------L------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V------------------------- SAPs(SNPs) (2)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------PROKAR_ZN_DEPE--------------------------------------------------------------------------------------------------------------------PLAT  PDB: A:284-398 UniProt: 284-398                                                                               PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sb4 A  29 WDGKIDGTGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKENMHELQLGSTYPDYDKNAYDLYQDHFWDPDTDNNFSKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDIDTPYHPANVTAVDSAGHVKFETFAEERKEQYKINTAGCKTNEDFYADILKNKDFNAWSKEYARGFAKTGKSIYYSHASMSHSWDDWDYAAKVTLANSQKGTAGYIYRFLHDVSEGNDPSVGKNVKELVAYISTSGEKDAGTDDYMYFGIKTKDGKTQEWEMDNPGNDFMTGSKDTYTFKLKDENLKIDDIQNMWIRKRKYTAFPDAYKPENIKIIANGKVVVDKDINEWISGNSTYNIK 398
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1SB4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1SB4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1SB4)

(-) Gene Ontology  (10, 20)

Theoretical Model(hide GO term definitions)
Chain A   (PHLC1_CLOPE | P0C216)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016788    hydrolase activity, acting on ester bonds    Catalysis of the hydrolysis of any ester bond.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0034480    phosphatidylcholine phospholipase C activity    Catalysis of the reaction: phosphatidylcholine + H2O = 1,2-diacylglycerol + a choline phosphate.
    GO:0004629    phospholipase C activity    Catalysis of the reaction: a phospholipid + H2O = 1,2-diacylglycerol + a phosphatidate.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0019835    cytolysis    The rupture of cell membranes and the loss of cytoplasm.
    GO:0044179    hemolysis in other organism    The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain A   (PHLC_CLOP1 | Q0TV31)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016788    hydrolase activity, acting on ester bonds    Catalysis of the hydrolysis of any ester bond.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0034480    phosphatidylcholine phospholipase C activity    Catalysis of the reaction: phosphatidylcholine + H2O = 1,2-diacylglycerol + a choline phosphate.
    GO:0004629    phospholipase C activity    Catalysis of the reaction: a phospholipid + H2O = 1,2-diacylglycerol + a phosphatidate.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0019835    cytolysis    The rupture of cell membranes and the loss of cytoplasm.
    GO:0044179    hemolysis in other organism    The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHLC1_CLOPE | P0C216: 1ca1 1gyg 1qm6 1qmd
        PHLC_CLOP1 | Q0TV31: 1ca1 1gyg 1qm6 1qmd 2wxt 2wxu 2wy6

(-) Related Entries Specified in the PDB File

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