2WWR - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN GLYOXYLATE REDUCTASE HYDROXYPYRUVATE REDUCTASE

Authors :   M. P. S. Booth, R. Conners, G. Rumsby, R. L. Brady

Date :   26 Oct 09 (Deposition) - 13 Oct 10 (Release) - 13 Oct 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.82

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: C,D  (1x)
Biol. Unit 2: A,B  (1x)

Keywords :   Molecular Conformation, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. P. Booth, R. Conners, G. Rumsby, R. L. Brady
Structural Basis Of Substrate Specificity In Human Glyoxylate Reductase/Hydroxypyruvate Reductase.
J. Mol. Biol. V. 360 178 2006
PubMed-ID: 16756993 | Reference-DOI: 10.1016/J.JMB.2006.05.018

Molecule 1 - GLYOXYLATE REDUCTASE/HYDROXYPYRUVATE REDUCTASE
	Chains	:	A, B, C, D
	EC Number	:	1.1.1.79
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTRCHISB
	Expression System Strain	:	ROSETTA
	Expression System Taxid	:	562
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:			C	D
Biological Unit 2 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	MG	2	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP B:253	BINDING SITE FOR RESIDUE MG B1328
2	AC2	SOFTWARE	ASP A:37 , ASP D:253	BINDING SITE FOR RESIDUE MG D1328

(no "SS Bond" information available for 2WWR)

Asymmetric Unit

No.	Residues
1	Ser A:272	-	Pro A:273
2	Glu A:274	-	Pro A:275
3	Ala B:27	-	Asp B:28
4	Ser B:272	-	Pro B:273
5	Glu B:274	-	Pro B:275
6	Ser C:272	-	Pro C:273
7	Glu C:274	-	Pro C:275
8	Ser D:272	-	Pro D:273
9	Glu D:274	-	Pro D:275

Asymmetric Unit (1, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_032762	R	170	Q	GRHPR_HUMAN	Polymorphism	12002324	A/B/C/D	R	170	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_032762	R	170	Q	GRHPR_HUMAN	Polymorphism	12002324	C/D	R	170	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_032762	R	170	Q	GRHPR_HUMAN	Polymorphism	12002324	A/B	R	170	Q

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	D_2_HYDROXYACID_DH_3	PS00671	D-isomer specific 2-hydroxyacid dehydrogenases signature 3.	GRHPR_HUMAN	234-250	4	A:234-250 B:234-250 C:234-250 D:234-250

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	D_2_HYDROXYACID_DH_3	PS00671	D-isomer specific 2-hydroxyacid dehydrogenases signature 3.	GRHPR_HUMAN	234-250	2	- - C:234-250 D:234-250

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	D_2_HYDROXYACID_DH_3	PS00671	D-isomer specific 2-hydroxyacid dehydrogenases signature 3.	GRHPR_HUMAN	234-250	2	A:234-250 B:234-250 - -

Asymmetric Unit (9, 36)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1b	ENST00000318158	1b	ENSE00001934486	chr9:37422663-37422830	168	GRHPR_HUMAN	1-28	28	4	A:6-28 B:6-28 C:6-28 D:6-28	23 23 23 23
1.2	ENST00000318158	2	ENSE00001258021	chr9:37424842-37424972	131	GRHPR_HUMAN	28-72	45	4	A:28-72 B:28-72 C:28-72 D:28-72	45 45 45 45
1.3a	ENST00000318158	3a	ENSE00001258055	chr9:37425919-37425991	73	GRHPR_HUMAN	72-96	25	4	A:72-96 B:72-96 C:72-96 D:72-96	25 25 25 25
1.3c	ENST00000318158	3c	ENSE00001257930	chr9:37426535-37426651	117	GRHPR_HUMAN	96-135	40	4	A:96-135 B:96-135 C:96-135 D:96-135	40 40 40 40
1.4b	ENST00000318158	4b	ENSE00001257990	chr9:37428481-37428569	89	GRHPR_HUMAN	135-165	31	4	A:135-165 B:135-165 C:135-165 D:135-165	31 31 31 31
1.4f	ENST00000318158	4f	ENSE00001149947	chr9:37429729-37429833	105	GRHPR_HUMAN	165-200	36	4	A:165-200 B:165-200 C:165-200 D:165-200	36 36 36 36
1.4h	ENST00000318158	4h	ENSE00001149942	chr9:37430508-37430643	136	GRHPR_HUMAN	200-245	46	4	A:200-245 (gaps) B:200-245 (gaps) C:200-245 (gaps) D:200-245 (gaps)	46 46 46 46
1.4l	ENST00000318158	4l	ENSE00000928324	chr9:37432005-37432135	131	GRHPR_HUMAN	245-289	45	4	A:245-289 B:245-289 C:245-289 D:245-289	45 45 45 45
1.6e	ENST00000318158	6e	ENSE00001952551	chr9:37436658-37436987	330	GRHPR_HUMAN	289-328	40	4	A:289-327 B:289-327 C:289-327 D:289-325	39 39 39 37

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:315
 aligned with GRHPR_HUMAN | Q9UBQ7 from UniProtKB/Swiss-Prot  Length:328

    Alignment length:322
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325  
          GRHPR_HUMAN     6 LMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELK 327
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhh...eeeee.......hhhhhhhhh....eeee......hhhhhhhhh....eeee........hhhhhhhh..eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................eeeee..hhhhhhhhhhhhhhh..eeeee....hhhhhhhhh.ee.hhhhhhhhh.eeee..-------...hhhhhhhh....eeee..hhhh.hhhhhhhhhhhh...eeee...........hhhhhh..eee.......hhhhhhhhhhhhhhhhhhhhhh.....ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------Q------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D_2_HYDROXYACID_D----------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1b  PDB: A:6-28 -------------------------------------------Exon 1.3a  PDB: A:72-96  --------------------------------------Exon 1.4b  PDB: A:135-165      ----------------------------------Exon 1.4h  PDB: A:200-245 (gaps)              -------------------------------------------Exon 1.6e  PDB: A:289-327 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) ----------------------Exon 1.2  PDB: A:28-72 UniProt: 28-72        -----------------------Exon 1.3c  PDB: A:96-135 UniProt: 96-135-----------------------------Exon 1.4f  PDB: A:165-200           --------------------------------------------Exon 1.4l  PDB: A:245-289 UniProt: 245-289   -------------------------------------- Transcript 1 (2)
                 2wwr A   6 LMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVAC-------GLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELK 327
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215|      225       235       245       255       265       275       285       295       305       315       325  
                                                                                                                                                                                                                                            216     224

Chain B from PDB  Type:PROTEIN  Length:315
 aligned with GRHPR_HUMAN | Q9UBQ7 from UniProtKB/Swiss-Prot  Length:328

    Alignment length:322
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325  
          GRHPR_HUMAN     6 LMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELK 327
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhh...eeeee.......hhhhhhhhh....eeee......hhhhhhhhh....eeee........hhhhhhhh..eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................eeeee..hhhhhhhhhhhhhhh..eeeee....hhhhhh....ee.hhhhhhhhh.eeee..-------...hhhhhhhh....eeee..hhhh.hhhhhhhhhhhh...eeee...........hhhhhh..eee.......hhhhhhhhhhhhhhhhhhhhhh.....ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------Q------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D_2_HYDROXYACID_D----------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1b  PDB: B:6-28 -------------------------------------------Exon 1.3a  PDB: B:72-96  --------------------------------------Exon 1.4b  PDB: B:135-165      ----------------------------------Exon 1.4h  PDB: B:200-245 (gaps)              -------------------------------------------Exon 1.6e  PDB: B:289-327 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) ----------------------Exon 1.2  PDB: B:28-72 UniProt: 28-72        -----------------------Exon 1.3c  PDB: B:96-135 UniProt: 96-135-----------------------------Exon 1.4f  PDB: B:165-200           --------------------------------------------Exon 1.4l  PDB: B:245-289 UniProt: 245-289   -------------------------------------- Transcript 1 (2)
                 2wwr B   6 LMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVAC-------GLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELK 327
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215|      225       235       245       255       265       275       285       295       305       315       325  
                                                                                                                                                                                                                                            216     224

Chain C from PDB  Type:PROTEIN  Length:315
 aligned with GRHPR_HUMAN | Q9UBQ7 from UniProtKB/Swiss-Prot  Length:328

    Alignment length:322
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325  
          GRHPR_HUMAN     6 LMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELK 327
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhh..eeeee.......hhhhhhhhhh...eeee......hhhhhhhhh....eeee........hhhhhhhh..eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................eeeee..hhhhhhhhhhhhhhh..eeeee.....hhhhhhhh.ee.hhhhhhhhh.eeee..-------.....hhhhhh....eeee.......hhhhhhhhhhh....eeee...........hhhhhh..eee.......hhhhhhhhhhhhhhhhhhhhhh.....ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------Q------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D_2_HYDROXYACID_D----------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1b  PDB: C:6-28 -------------------------------------------Exon 1.3a  PDB: C:72-96  --------------------------------------Exon 1.4b  PDB: C:135-165      ----------------------------------Exon 1.4h  PDB: C:200-245 (gaps)              -------------------------------------------Exon 1.6e  PDB: C:289-327 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) ----------------------Exon 1.2  PDB: C:28-72 UniProt: 28-72        -----------------------Exon 1.3c  PDB: C:96-135 UniProt: 96-135-----------------------------Exon 1.4f  PDB: C:165-200           --------------------------------------------Exon 1.4l  PDB: C:245-289 UniProt: 245-289   -------------------------------------- Transcript 1 (2)
                 2wwr C   6 LMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVAC-------GLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELK 327
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215|      225       235       245       255       265       275       285       295       305       315       325  
                                                                                                                                                                                                                                            216     224

Chain D from PDB  Type:PROTEIN  Length:313
 aligned with GRHPR_HUMAN | Q9UBQ7 from UniProtKB/Swiss-Prot  Length:328

    Alignment length:320
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325
          GRHPR_HUMAN     6 LMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSE 325
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---2-Hacid_dh-2wwrD01 D:9-325                                                                                                                                                                                                                                                                                                    Pfam domains (1)
           Pfam domains (2) ---2-Hacid_dh-2wwrD02 D:9-325                                                                                                                                                                                                                                                                                                    Pfam domains (2)
           Pfam domains (3) ---2-Hacid_dh-2wwrD03 D:9-325                                                                                                                                                                                                                                                                                                    Pfam domains (3)
           Pfam domains (4) ---2-Hacid_dh-2wwrD04 D:9-325                                                                                                                                                                                                                                                                                                    Pfam domains (4)
           Pfam domains (5) --------------------------------------------------------------------------------------------------------------2-Hacid_dh_C-2wwrD05 D:116-295                                                                                                                                                      ------------------------------ Pfam domains (5)
           Pfam domains (6) --------------------------------------------------------------------------------------------------------------2-Hacid_dh_C-2wwrD06 D:116-295                                                                                                                                                      ------------------------------ Pfam domains (6)
           Pfam domains (7) --------------------------------------------------------------------------------------------------------------2-Hacid_dh_C-2wwrD07 D:116-295                                                                                                                                                      ------------------------------ Pfam domains (7)
           Pfam domains (8) --------------------------------------------------------------------------------------------------------------2-Hacid_dh_C-2wwrD08 D:116-295                                                                                                                                                      ------------------------------ Pfam domains (8)
         Sec.struct. author .eeeee....hhhhhhhhhh...eeeee.......hhhhhhhhh....eeee......hhhhhhhhh....eeee..................eee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................eeeee..hhhhhhhhhhhhhhh..eeeee..............ee.hhhhhhhhh.eeee..-------...hhhhhhhh....eeee.......hhhhhhhhhhh....eeee...........hhhhhh..eee.......hhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------Q----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D_2_HYDROXYACID_D--------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1b  PDB: D:6-28 -------------------------------------------Exon 1.3a  PDB: D:72-96  --------------------------------------Exon 1.4b  PDB: D:135-165      ----------------------------------Exon 1.4h  PDB: D:200-245 (gaps)              -------------------------------------------Exon 1.6e  PDB: D:289-325             Transcript 1 (1)
           Transcript 1 (2) ----------------------Exon 1.2  PDB: D:28-72 UniProt: 28-72        -----------------------Exon 1.3c  PDB: D:96-135 UniProt: 96-135-----------------------------Exon 1.4f  PDB: D:165-200           --------------------------------------------Exon 1.4l  PDB: D:245-289 UniProt: 245-289   ------------------------------------ Transcript 1 (2)
                 2wwr D   6 LMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVAC-------GLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSE 325
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215|      225       235       245       255       265       275       285       295       305       315       325
                                                                                                                                                                                                                                            216     224

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2WWR)

(no "CATH Domain" information available for 2WWR)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Form_Glyc_dh (56)

Family: 2-Hacid_dh (21)

Homo sapiens (Human) (3)

1a	2-Hacid_dh-2wwrD01	D:9-325
1b	2-Hacid_dh-2wwrD02	D:9-325
1c	2-Hacid_dh-2wwrD03	D:9-325
1d	2-Hacid_dh-2wwrD04	D:9-325

Clan: NADP_Rossmann (1239)

Family: 2-Hacid_dh_C (23)

Homo sapiens (Human) (3)

2a	2-Hacid_dh_C-2wwrD05	D:116-295
2b	2-Hacid_dh_C-2wwrD06	D:116-295
2c	2-Hacid_dh_C-2wwrD07	D:116-295
2d	2-Hacid_dh_C-2wwrD08	D:116-295

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (GRHPR_HUMAN | Q9UBQ7)

molecular function
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0070402	NADPH binding	Interacting selectively and non-covalently with the reduced form, NADPH, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.
	GO:0031406	carboxylic acid binding	Interacting selectively and non-covalently with a carboxylic acid, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
	GO:0008465	glycerate dehydrogenase activity	Catalysis of the reaction: (R)-glycerate + NAD+ = hydroxypyruvate + NADH + H+.
	GO:0030267	glyoxylate reductase (NADP) activity	Catalysis of the reaction: glycolate + NADP+ = glyoxylate + NADPH + H+.
	GO:0016618	hydroxypyruvate reductase activity	Catalysis of the reaction: D-glycerate + NADP+ = hydroxypyruvate + NADPH + H+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
	GO:0043648	dicarboxylic acid metabolic process	The chemical reactions and pathways involving dicarboxylic acids, any organic acid containing two carboxyl (COOH) groups or anions (COO-).
	GO:0007588	excretion	The elimination by an organism of the waste products that arise as a result of metabolic activity. These products include water, carbon dioxide (CO2), and nitrogenous compounds.
	GO:0046487	glyoxylate metabolic process	The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0051259	protein oligomerization	The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005782	peroxisomal matrix	The volume contained within the membranes of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase.

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		Glu A:274 - Pro A:275	[ RasMol ]
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		Glu C:274 - Pro C:275	[ RasMol ]
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		Ser C:272 - Pro C:273	[ RasMol ]
		Ser D:272 - Pro D:273	[ RasMol ]

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	2wwr
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	1.1.1.79
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UniProtKB/Swiss-Prot
	GRHPR_HUMAN \| Q9UBQ7	:	2gcg 2h1s 2q50

2gcg	TERNARY CRYSTAL STRUCTURE OF HUMAN GLYOXYLATEREDUCTASE/HYDROXYPYRUVATE REDUCTASE
2h1s	CRYSTAL STRUCTURE OF A GLYOXYLATE/ HYDROXYPYRUVATE REDUCTASEFROM HOMO SAPIENS

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (9, 9)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 4)

PROSITE Motifs (1, 4)

Exons (9, 36)

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Pfam Domains (2, 8)

Gene Ontology (20, 20)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File