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(-) Description

Title :  FOLDON CONTAINING D-AMINO ACIDS IN TURN POSITIONS
 
Authors :  B. Eckhardt, W. Grosse, L. -O. Essen, A. Geyer
Date :  22 Oct 09  (Deposition) - 29 Sep 10  (Release) - 24 Nov 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.98
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  D-Amino Acids, Chaperone, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Eckhardt, W. Grosse, L. Essen, A. Geyer
Structural Characterization Of A Beta-Turn Mimic Within A Protein-Protein Interface.
Proc. Natl. Acad. Sci. Usa V. 107 18336 2010
PubMed-ID: 20937907  |  Reference-DOI: 10.1073/PNAS.1004187107

(-) Compounds

Molecule 1 - FIBRITIN
    Chains: A, B, C
    Fragment: FOLDON, RESIDUES 458-484
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665
    Synonym: T4 FIBRITIN
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
1DAL3Mod. Amino AcidD-ALANINE
2DPN3Mod. Amino AcidD-PHENYLALANINE
3PG41Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:25 , GLY B:1 , TYR B:2 , HOH B:2001 , LEU C:22 , SER C:24 , THR C:25 , HOH C:2061BINDING SITE FOR RESIDUE PG4 C1028

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WW6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WW6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WW6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WW6)

(-) Exons   (0, 0)

(no "Exon" information available for 2WW6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:27
 aligned with Q76VI8_BPT2 | Q76VI8 from UniProtKB/TrEMBL  Length:487

    Alignment length:27
                                   467       477       
          Q76VI8_BPT2   458 GYIPEAPRDGQAYVRKDGEWVLLSTFL 484
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ...........eeeee..eeee.hhhh Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                 2ww6 A   1 GYIPEAPRDxQAYVRKxGEWVLLSTFL  27
                                    10      | 20       
                                    10-DAL 17-DPN      


Chain B from PDB  Type:PROTEIN  Length:27
 aligned with Q76VI8_BPT2 | Q76VI8 from UniProtKB/TrEMBL  Length:487

    Alignment length:27
                                   467       477       
          Q76VI8_BPT2   458 GYIPEAPRDGQAYVRKDGEWVLLSTFL 484
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ...........eeeee..eeee.hhhh Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                 2ww6 B   1 GYIPEAPRDxQAYVRKxGEWVLLSTFL  27
                                    10      | 20       
                                    10-DAL 17-DPN      


Chain C from PDB  Type:PROTEIN  Length:27
 aligned with Q76VI8_BPT2 | Q76VI8 from UniProtKB/TrEMBL  Length:487

    Alignment length:27
                                   467       477       
          Q76VI8_BPT2   458 GYIPEAPRDGQAYVRKDGEWVLLSTFL 484
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
           Pfam domains (1) Fibritin_C-2ww6C01 C:1-26 - Pfam domains (1)
           Pfam domains (2) Fibritin_C-2ww6C02 C:1-26 - Pfam domains (2)
           Pfam domains (3) Fibritin_C-2ww6C03 C:1-26 - Pfam domains (3)
         Sec.struct. author ...........eeeee..eeee.hhhh Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                 2ww6 C   1 GYIPEAPRDxQAYVRKxGEWVLLSTFL  27
                                    10      | 20       
                                    10-DAL 17-DPN
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WW6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WW6)

(-) Pfam Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Fibritin_C] (7)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2WW6)

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  2ww6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q76VI8_BPT2 | Q76VI8: 2ww7

(-) Related Entries Specified in the PDB File

2ww7 FOLDON CONTAINING BETA-TURN MIMIC