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(-) Description

Title :  FOLDON CONTAINING BETA-TURN MIMIC
 
Authors :  B. Eckhardt, W. Grosse, L. -O. Essen, A. Geyer
Date :  22 Oct 09  (Deposition) - 29 Sep 10  (Release) - 24 Nov 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.06
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  D-Amino Acids, Chaperone, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Eckhardt, W. Grosse, L. Essen, A. Geyer
Structural Characterization Of A Beta-Turn Mimic Within A Protein-Protein Interface.
Proc. Natl. Acad. Sci. Usa V. 107 18336 2010
PubMed-ID: 20937907  |  Reference-DOI: 10.1073/PNAS.1004187107

(-) Compounds

Molecule 1 - FIBRITIN
    Chains: A, B, C, D, E, F
    Fragment: FOLDON, RESIDUES 459-484
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665
    Synonym: T4 FIBRITIN
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 24)

Asymmetric Unit (4, 24)
No.NameCountTypeFull Name
1DAL6Mod. Amino AcidD-ALANINE
2NA86Mod. Amino Acid(1S)-1-CARBOXY-2-NAPHTHALEN-2-YLETHANAMINIUM
3PRS6Mod. Amino AcidTHIOPROLINE
4TH66Mod. Amino Acid4-HYDROXY-L-THREONINE
Biological Unit 1 (4, 12)
No.NameCountTypeFull Name
1DAL3Mod. Amino AcidD-ALANINE
2NA83Mod. Amino Acid(1S)-1-CARBOXY-2-NAPHTHALEN-2-YLETHANAMINIUM
3PRS3Mod. Amino AcidTHIOPROLINE
4TH63Mod. Amino Acid4-HYDROXY-L-THREONINE
Biological Unit 2 (4, 12)
No.NameCountTypeFull Name
1DAL3Mod. Amino AcidD-ALANINE
2NA83Mod. Amino Acid(1S)-1-CARBOXY-2-NAPHTHALEN-2-YLETHANAMINIUM
3PRS3Mod. Amino AcidTHIOPROLINE
4TH63Mod. Amino Acid4-HYDROXY-L-THREONINE

(-) Sites  (0, 0)

(no "Site" information available for 2WW7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WW7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WW7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WW7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WW7)

(-) Exons   (0, 0)

(no "Exon" information available for 2WW7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:26
 aligned with Q76VI8_BPT2 | Q76VI8 from UniProtKB/TrEMBL  Length:487

    Alignment length:28
                                   466       476        
          Q76VI8_BPT2   457 AGYIPEAPRDGQAYVRKDGEWVLLSTFL 484
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .--.........eeeee..eeee.hhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                 2ww7 A   2 a--IPEAPRDxQAYVRKtpEWVLLSTFL  27
                            |  |     9|      |19        
                            |  3     10-DAL 17-TH6      
                            2-NA8            18-PRS     


Chain B from PDB  Type:PROTEIN  Length:26
 aligned with Q76VI8_BPT2 | Q76VI8 from UniProtKB/TrEMBL  Length:487

    Alignment length:28
                                   466       476        
          Q76VI8_BPT2   457 AGYIPEAPRDGQAYVRKDGEWVLLSTFL 484
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .--.........eeeee..eeee.hhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                 2ww7 B   2 a--IPEAPRDxQAYVRKtpEWVLLSTFL  27
                            |  |     9|      |19        
                            2-NA8    10-DAL 17-TH6      
                                             18-PRS     


Chain C from PDB  Type:PROTEIN  Length:26
 aligned with Q76VI8_BPT2 | Q76VI8 from UniProtKB/TrEMBL  Length:487

    Alignment length:28
                                   466       476        
          Q76VI8_BPT2   457 AGYIPEAPRDGQAYVRKDGEWVLLSTFL 484
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .--.........eeeee..eeee.hhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                 2ww7 C   2 a--IPEAPRDxQAYVRKtpEWVLLSTFL  27
                            |  |     9|      |19        
                            2-NA8    10-DAL 17-TH6      
                                             18-PRS     


Chain D from PDB  Type:PROTEIN  Length:26
 aligned with Q76VI8_BPT2 | Q76VI8 from UniProtKB/TrEMBL  Length:487

    Alignment length:28
                                   466       476        
          Q76VI8_BPT2   457 AGYIPEAPRDGQAYVRKDGEWVLLSTFL 484
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .--.........eeeee..eeee.hhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                 2ww7 D   2 a--IPEAPRDxQAYVRKtpEWVLLSTFL  27
                            |  |     9|      |19        
                            2-NA8    10-DAL 17-TH6      
                                             18-PRS     


Chain E from PDB  Type:PROTEIN  Length:26
 aligned with Q76VI8_BPT2 | Q76VI8 from UniProtKB/TrEMBL  Length:487

    Alignment length:28
                                   466       476        
          Q76VI8_BPT2   457 AGYIPEAPRDGQAYVRKDGEWVLLSTFL 484
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .--.........eeeee..eeee.hhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                 2ww7 E   2 a--IPEAPRDxQAYVRKtpEWVLLSTFL  27
                            |  |     9|      |19        
                            2-NA8    10-DAL 17-TH6      
                                             18-PRS     


Chain F from PDB  Type:PROTEIN  Length:26
 aligned with Q76VI8_BPT2 | Q76VI8 from UniProtKB/TrEMBL  Length:487

    Alignment length:28
                                   466       476        
          Q76VI8_BPT2   457 AGYIPEAPRDGQAYVRKDGEWVLLSTFL 484
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
           Pfam domains (1) ---Fibritin_C-2ww7F01      - Pfam domains (1)
           Pfam domains (2) ---Fibritin_C-2ww7F02      - Pfam domains (2)
           Pfam domains (3) ---Fibritin_C-2ww7F03      - Pfam domains (3)
           Pfam domains (4) ---Fibritin_C-2ww7F04      - Pfam domains (4)
           Pfam domains (5) ---Fibritin_C-2ww7F05      - Pfam domains (5)
           Pfam domains (6) ---Fibritin_C-2ww7F06      - Pfam domains (6)
         Sec.struct. author .--.........eeeee..eeee.hhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                 2ww7 F   2 a--IPEAPRDxQAYVRKtpEWVLLSTFL  27
                            |  |     9|      |19        
                            2-NA8    10-DAL 17-TH6      
                                             18-PRS
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WW7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WW7)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: no clan defined [family: Fibritin_C] (7)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2WW7)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q76VI8_BPT2 | Q76VI8: 2ww6

(-) Related Entries Specified in the PDB File

2ww6 FOLDON CONTAINING D-AMINO ACIDS IN TURN POSITIONS