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(-) Description

Title :  STRUCTURAL INSIGHTS INTO THE PRE-REACTION STATE OF PYRUVATE DECARBOXYLASE FROM ZYMOMONAS MOBILIS
 
Authors :  X. Y. Pei, K. Erixon, B. F. Luisi, F. J. Leeper
Date :  15 Oct 09  (Deposition) - 09 Feb 10  (Release) - 19 Oct 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,E,F,V,X,Y,Z
Biol. Unit 1:  V,X,Y,Z  (1x)
Biol. Unit 2:  A,B,E,F  (1x)
Keywords :  Thiamin Diphosphate, Lyase, Flavoprotein, Metal-Binding, Alcohol Fermentation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  X. Y. Pei, K. Erixon, B. F. Luisi, F. J. Leeper
Structural Insights Into The Pre-Reaction State Of Pyruvate Decarboxylase From Zymomonas Mobilis
Biochemistry V. 49 1727 2010
PubMed-ID: 20099870  |  Reference-DOI: 10.1021/BI901864J

(-) Compounds

Molecule 1 - PYRUVATE DECARBOXYLASE
    ChainsA, B, E, F, V, X, Y, Z
    EC Number4.1.1.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPPL450
    Expression System StrainDH5[ALPHA]
    Expression System Taxid668369
    Expression System Vector TypePLASMID
    Organism ScientificZYMOMONAS MOBILIS
    Organism Taxid542
    SynonymPDC

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABEFVXYZ
Biological Unit 1 (1x)    VXYZ
Biological Unit 2 (1x)ABEF    

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 19)

Asymmetric Unit (3, 19)
No.NameCountTypeFull Name
1MG8Ligand/IonMAGNESIUM ION
2PYR3Ligand/IonPYRUVIC ACID
3TPU8Ligand/Ion2-{1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-5-METHYL-1H-1,2,3-TRIAZOL-4-YL}ETHYLTRIHYDROGEN DIPHOSPHATE
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2PYR2Ligand/IonPYRUVIC ACID
3TPU4Ligand/Ion2-{1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-5-METHYL-1H-1,2,3-TRIAZOL-4-YL}ETHYLTRIHYDROGEN DIPHOSPHATE
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2PYR1Ligand/IonPYRUVIC ACID
3TPU4Ligand/Ion2-{1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-5-METHYL-1H-1,2,3-TRIAZOL-4-YL}ETHYLTRIHYDROGEN DIPHOSPHATE

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:389 , ASP A:390 , GLY A:413 , HIS A:414 , ILE A:415 , GLY A:439 , ASP A:440 , GLY A:441 , SER A:442 , ASN A:467 , GLY A:469 , TYR A:470 , THR A:471 , ILE A:472 , GLU A:473 , MG A:601 , HOH A:2307 , HOH A:2332 , HOH A:2388 , ALA B:25 , GLY B:26 , GLU B:50 , VAL B:75 , HIS B:114BINDING SITE FOR RESIDUE TPU A 600
02AC2SOFTWAREASP A:440 , ASN A:467 , GLY A:469 , TPU A:600 , HOH A:2332BINDING SITE FOR RESIDUE MG A 601
03AC3SOFTWAREALA A:25 , GLY A:26 , GLU A:50 , VAL A:75 , HIS A:114 , GLY B:389 , ASP B:390 , GLY B:413 , HIS B:414 , ILE B:415 , GLY B:439 , ASP B:440 , GLY B:441 , SER B:442 , ASN B:467 , GLY B:469 , TYR B:470 , THR B:471 , ILE B:472 , GLU B:473 , MG B:601 , HOH B:2231 , HOH B:2292 , HOH B:2293BINDING SITE FOR RESIDUE TPU B 600
04AC4SOFTWAREASP B:440 , ASN B:467 , GLY B:469 , TPU B:600 , HOH B:2293BINDING SITE FOR RESIDUE MG B 601
05AC5SOFTWAREGLY E:389 , ASP E:390 , GLY E:413 , HIS E:414 , ILE E:415 , GLY E:439 , ASP E:440 , GLY E:441 , SER E:442 , ASN E:467 , GLY E:469 , TYR E:470 , THR E:471 , ILE E:472 , GLU E:473 , MG E:601 , HOH E:2238 , HOH E:2246 , HOH E:2294 , HOH E:2295 , ALA F:25 , GLU F:50 , VAL F:75 , HIS F:114BINDING SITE FOR RESIDUE TPU E 600
06AC6SOFTWAREASP E:440 , ASN E:467 , GLY E:469 , TPU E:600 , HOH E:2246BINDING SITE FOR RESIDUE MG E 601
07AC7SOFTWAREASP F:440 , ASN F:467 , GLY F:469 , TPU F:600 , HOH F:2332BINDING SITE FOR RESIDUE MG F 569
08AC8SOFTWAREALA E:25 , GLY E:26 , GLU E:50 , VAL E:75 , HIS E:114 , GLY F:389 , ASP F:390 , GLY F:413 , HIS F:414 , ILE F:415 , GLY F:439 , ASP F:440 , GLY F:441 , SER F:442 , ASN F:467 , GLY F:469 , TYR F:470 , THR F:471 , ILE F:472 , GLU F:473 , MG F:569 , PYR F:602 , HOH F:2266 , HOH F:2332 , HOH F:2333BINDING SITE FOR RESIDUE TPU F 600
09AC9SOFTWAREASP E:27 , HIS E:114 , HOH E:2043 , TYR F:290 , ILE F:472 , GLU F:473 , ILE F:476 , TPU F:600 , HOH F:2334BINDING SITE FOR RESIDUE PYR F 602
10BC1SOFTWAREGLY V:389 , ASP V:390 , GLY V:413 , HIS V:414 , ILE V:415 , GLY V:439 , ASP V:440 , GLY V:441 , SER V:442 , ASN V:467 , GLY V:469 , TYR V:470 , THR V:471 , ILE V:472 , GLU V:473 , MG V:601 , HOH V:2266 , HOH V:2276 , HOH V:2344 , ALA Z:25 , GLY Z:26 , GLU Z:50 , VAL Z:75 , HIS Z:114 , PYR Z:602BINDING SITE FOR RESIDUE TPU V 600
11BC2SOFTWAREGLY V:439 , ASP V:440 , ILE V:465 , ASN V:467 , TPU V:600BINDING SITE FOR RESIDUE MG V 601
12BC3SOFTWAREASP V:27 , HIS V:114 , HOH V:2052 , TYR Z:290 , ILE Z:472 , GLU Z:473 , ILE Z:476 , TPU Z:600BINDING SITE FOR RESIDUE PYR V 602
13BC4SOFTWAREGLY X:389 , ASP X:390 , GLY X:413 , HIS X:414 , ILE X:415 , GLY X:439 , ASP X:440 , GLY X:441 , SER X:442 , ASN X:467 , GLY X:469 , TYR X:470 , THR X:471 , ILE X:472 , GLU X:473 , MG X:601 , HOH X:2272 , HOH X:2292 , HOH X:2301 , HOH X:2357 , ALA Y:25 , GLY Y:26 , GLU Y:50 , VAL Y:75 , HIS Y:114BINDING SITE FOR RESIDUE TPU X 600
14BC5SOFTWAREASP X:440 , ASN X:467 , GLY X:469 , TPU X:600 , HOH X:2301BINDING SITE FOR RESIDUE MG X 601
15BC6SOFTWAREALA X:25 , GLY X:26 , GLU X:50 , VAL X:75 , HIS X:114 , GLY Y:389 , ASP Y:390 , GLY Y:413 , HIS Y:414 , ILE Y:415 , GLY Y:439 , ASP Y:440 , GLY Y:441 , SER Y:442 , ASN Y:467 , GLY Y:469 , TYR Y:470 , THR Y:471 , ILE Y:472 , GLU Y:473 , MG Y:601 , HOH Y:2265 , HOH Y:2274 , HOH Y:2317BINDING SITE FOR RESIDUE TPU Y 600
16BC7SOFTWAREASP Y:440 , ASN Y:467 , GLY Y:469 , TPU Y:600 , HOH Y:2274BINDING SITE FOR RESIDUE MG Y 601
17BC8SOFTWAREASP Z:440 , ASN Z:467 , GLY Z:469 , TPU Z:600 , HOH Z:2334BINDING SITE FOR RESIDUE MG Z 569
18BC9SOFTWAREALA V:25 , GLY V:26 , GLU V:50 , VAL V:75 , HIS V:114 , PYR V:602 , GLY Z:389 , ASP Z:390 , GLY Z:413 , HIS Z:414 , ILE Z:415 , GLY Z:439 , ASP Z:440 , GLY Z:441 , SER Z:442 , ASN Z:467 , GLY Z:469 , TYR Z:470 , THR Z:471 , ILE Z:472 , GLU Z:473 , MG Z:569 , HOH Z:2334 , HOH Z:2335BINDING SITE FOR RESIDUE TPU Z 600
19CC1SOFTWARETYR V:290 , GLU V:473 , ILE V:476 , TPU V:600 , GLY Z:26 , ASP Z:27 , HIS Z:114 , HOH Z:2064BINDING SITE FOR RESIDUE PYR Z 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WVA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WVA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WVA)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TPP_ENZYMESPS00187 Thiamine pyrophosphate enzymes signature.PDC_ZYMMO423-442
 
 
 
 
 
 
 
  8A:423-442
B:423-442
E:423-442
F:423-442
V:423-442
X:423-442
Y:423-442
Z:423-442
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TPP_ENZYMESPS00187 Thiamine pyrophosphate enzymes signature.PDC_ZYMMO423-442
 
 
 
 
 
 
 
  4-
-
-
-
V:423-442
X:423-442
Y:423-442
Z:423-442
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TPP_ENZYMESPS00187 Thiamine pyrophosphate enzymes signature.PDC_ZYMMO423-442
 
 
 
 
 
 
 
  4A:423-442
B:423-442
E:423-442
F:423-442
-
-
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 2WVA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:565
 aligned with PDC_ZYMMO | P06672 from UniProtKB/Swiss-Prot  Length:568

    Alignment length:565
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     
            PDC_ZYMMO     2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
               SCOP domains d2wvaa1 A:2-187 automated matches                                                                                                                                                         d2wvaa2 A:188-362 automated matches                                                                                                                                            d2wvaa3 A:363-566 automated matches                                                                                                                                                                          SCOP domains
               CATH domains 2wvaA01 A:2-186  [code=3.40.50.970, no name defined]                                                                                                                                     -2wvaA02 A:188-350 TPP-binding domain                                                                                                                               ----2wvaA03 A:355-548  [code=3.40.50.970, no name defined]                                                                                                                                            ------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhh...eeee.....hhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhh...eeeeeee.hhhhh...............hhhhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhh..eeeeee......ee.ee.hhhhhh.....hhhhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhh.eeeee.hhh.........eeeeehhhhh..hhhhhhhhh.eeeee................hhh.eeee...eeee..eeee..hhhhhhhhhhhhh...hhhhhhhhhh.................hhhhhhhhhhh.....eeeee..hhhhhhhhh.......eeee........hhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhhh....eeeeee...hhhhhh...hhhhh....hhhhhhhhhhh.........eeeee.hhhhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wva A   2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     

Chain B from PDB  Type:PROTEIN  Length:565
 aligned with PDC_ZYMMO | P06672 from UniProtKB/Swiss-Prot  Length:568

    Alignment length:565
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     
            PDC_ZYMMO     2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
               SCOP domains d2wvab1 B:2-187 automated matches                                                                                                                                                         d2wvab2 B:188-362 automated matches                                                                                                                                            d2wvab3 B:363-566 automated matches                                                                                                                                                                          SCOP domains
               CATH domains 2wvaB01 B:2-186  [code=3.40.50.970, no name defined]                                                                                                                                     -2wvaB02 B:188-350 TPP-binding domain                                                                                                                               ----2wvaB03 B:355-548  [code=3.40.50.970, no name defined]                                                                                                                                            ------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhh...eeee.....hhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhh...eeeeeee.hhhhh...............hhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh..eeeeee......ee.ee..hhhhhh....hhhhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhh.eeeee.hhh.........eeeeehhhhh..hhhhhhhhh.eeeee................hhh.eeee...eeee..eeee..hhhhhhhhhhhhh...hhhhhhhhhh.................hhhhhhhhhhh.....eeeee..hhhhhhhhh.......eeee........hhhhhhhhhhhhh...eeeeeeehhhhhhhh.hhhhhhhh....eeeeee...hhhhhh...hhhhh....hhhhhhhhhhh.........eeeee.hhhhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wva B   2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     

Chain E from PDB  Type:PROTEIN  Length:565
 aligned with PDC_ZYMMO | P06672 from UniProtKB/Swiss-Prot  Length:568

    Alignment length:565
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     
            PDC_ZYMMO     2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
               SCOP domains d2wvae1 E:2-187 automated matches                                                                                                                                                         d2wvae2 E:188-362 automated matches                                                                                                                                            d2wvae3 E:363-566 automated matches                                                                                                                                                                          SCOP domains
               CATH domains 2wvaE01 E:2-186  [code=3.40.50.970, no name defined]                                                                                                                                     -2wvaE02 E:188-350 TPP-binding domain                                                                                                                               ----2wvaE03 E:355-548  [code=3.40.50.970, no name defined]                                                                                                                                            ------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhh...eeee.....hhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhh...eeeeeee.hhhhh...............hhhhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhh..eeeeee......ee.ee..hhhhhh....hhhhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhh.eeeee.hhh.........eeeeehhhhh..hhhhhhhhh.eeeee................hhh.eeeee..eeee..eeee..hhhhhhhhhhhhh...hhhhhhhhhh.................hhhhhhhhhhh.....eeeee..hhhhhhhhh.......eee.........hhhhhhhhhhhhh...eeeeeeehhhhhhhh.hhhhhhhh....eeeeee...hhhhhh...hhhhh....hhhhhhhhhhh.........eeeee.hhhhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wva E   2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     

Chain F from PDB  Type:PROTEIN  Length:565
 aligned with PDC_ZYMMO | P06672 from UniProtKB/Swiss-Prot  Length:568

    Alignment length:565
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     
            PDC_ZYMMO     2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
               SCOP domains d2wvaf1 F:2-187 automated matches                                                                                                                                                         d2wvaf2 F:188-362 automated matches                                                                                                                                            d2wvaf3 F:363-566 automated matches                                                                                                                                                                          SCOP domains
               CATH domains 2wvaF01 F:2-186  [code=3.40.50.970, no name defined]                                                                                                                                     -2wvaF02 F:188-350 TPP-binding domain                                                                                                                               ----2wvaF03 F:355-548  [code=3.40.50.970, no name defined]                                                                                                                                            ------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhh...eeee.....hhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhh...eeeeeee.hhhhh...............hhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh..eeeeee......ee.ee..hhhhhh....hhhhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhh.eeeee.hhh.........eeeeehhhhh..hhhhhhhhh.eeeee................hhh.eeee...eeee..eeee..hhhhhhhhhhhhh...hhhhhhhhhh.................hhhhhhhhhhh.....eeeee..hhhhhhhhh.......eeee........hhhhhhhhhhhhh...eeeeeeehhhhhhhh.hhhhhhhh....eeeeee...hhhhhh...hhhhh....hhhhhhhhhhh.........eeeee.hhhhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wva F   2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     

Chain V from PDB  Type:PROTEIN  Length:565
 aligned with PDC_ZYMMO | P06672 from UniProtKB/Swiss-Prot  Length:568

    Alignment length:565
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     
            PDC_ZYMMO     2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
               SCOP domains d2wvav1 V:2-187 automated matches                                                                                                                                                         d2wvav2 V:188-362 automated matches                                                                                                                                            d2wvav3 V:363-566 automated matches                                                                                                                                                                          SCOP domains
               CATH domains 2wvaV01 V:2-186  [code=3.40.50.970, no name defined]                                                                                                                                     -2wvaV02 V:188-350 TPP-binding domain                                                                                                                               ----2wvaV03 V:355-548  [code=3.40.50.970, no name defined]                                                                                                                                            ------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhh...eeee.....hhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhh...eeeeeee.hhhhh...............hhhhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhh..eeeeee......ee.ee..hhhhhh....hhhhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhh.eeeee.hhh.........eeeeehhhhh..hhhhhhhhh.eeeee................hhh.eeee...eeee..eeee..hhhhhhhhhhhhh...hhhhhhhhhh.................hhhhhhhhhhh.....eeeee..hhhhhhhhh.......eee.........hhhhhhhhhhhhh...eeeeeeehhhhhhhh.hhhhhhhh....eeeeee...hhhhhh...hhhhh....hhhhhhhhhhh.........eeeee.hhhhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wva V   2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     

Chain X from PDB  Type:PROTEIN  Length:566
 aligned with PDC_ZYMMO | P06672 from UniProtKB/Swiss-Prot  Length:568

    Alignment length:566
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560      
            PDC_ZYMMO     1 MSYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
               SCOP domains d2wvax1 X:1-187 automated matches                                                                                                                                                          d2wvax2 X:188-362 automated matches                                                                                                                                            d2wvax3 X:363-566 automated matches                                                                                                                                                                          SCOP domains
               CATH domains 2wvaX01 X:1-186  [code=3.40.50.970, no name defined]                                                                                                                                      -2wvaX02 X:188-350 TPP-binding domain                                                                                                                               ----2wvaX03 X:355-548  [code=3.40.50.970, no name defined]                                                                                                                                            ------------------ CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eehhhhhhhhhhhh...eeee.....hhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhh...eeeeeee.hhhhh...............hhhhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhh..eeeeee......ee.ee..hhhhhh....hhhhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhh.eeeee.hhh.........eeeeehhhhh..hhhhhhhhh.eeeee................hhh.eeee...eeee..eeee..hhhhhhhhhhhhh...hhhhhhhhhh.................hhhhhhhhhhh.....eeeee..hhhhhhhhh.......eee.........hhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhhh....eeeeee...hhhhhh...hhhhh....hhhhhhhhhhh.........eeeee.hhhhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wva X   1 MSYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560      

Chain Y from PDB  Type:PROTEIN  Length:565
 aligned with PDC_ZYMMO | P06672 from UniProtKB/Swiss-Prot  Length:568

    Alignment length:565
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     
            PDC_ZYMMO     2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
               SCOP domains d2wvay1 Y:2-187 automated matches                                                                                                                                                         d2wvay2 Y:188-362 automated matches                                                                                                                                            d2wvay3 Y:363-566 automated matches                                                                                                                                                                          SCOP domains
               CATH domains 2wvaY01 Y:2-186  [code=3.40.50.970, no name defined]                                                                                                                                     -2wvaY02 Y:188-350 TPP-binding domain                                                                                                                               ----2wvaY03 Y:355-548  [code=3.40.50.970, no name defined]                                                                                                                                            ------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhh...eeee.....hhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhh...eeeeeee.hhhhh...............hhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh..eeeeee......ee.ee..hhhhhh....hhhhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhh.eeeee.hhh.........eeeeehhhhh..hhhhhhhhh.eeeee................hhh.eeee...eeee..eeee..hhhhhhhhhhhhh...hhhhhhhhhh.................hhhhhhhhhhh.....eeeee..hhhhhhhhh.......eee.........hhhhhhhhhhhhh...eeeeeeehhhhhhhh.hhhhhhhh....eeeeee...hhhhhh...hhhhh....hhhhhhhhhhh.........eeeee.hhhhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wva Y   2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     

Chain Z from PDB  Type:PROTEIN  Length:565
 aligned with PDC_ZYMMO | P06672 from UniProtKB/Swiss-Prot  Length:568

    Alignment length:565
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     
            PDC_ZYMMO     2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
               SCOP domains d2wvaz1 Z:2-187 automated matches                                                                                                                                                         d2wvaz2 Z:188-362 automated matches                                                                                                                                            d2wvaz3 Z:363-566 automated matches                                                                                                                                                                          SCOP domains
               CATH domains 2wvaZ01 Z:2-186  [code=3.40.50.970, no name defined]                                                                                                                                     -2wvaZ02 Z:188-350 TPP-binding domain                                                                                                                               ----2wvaZ03 Z:355-548  [code=3.40.50.970, no name defined]                                                                                                                                            ------------------ CATH domains
           Pfam domains (1) -TPP_enzyme_N-2wvaZ17 Z:3-179                                                                                                                                                     -------------------TPP_enzyme_M-2wvaZ01 Z:199-360                                                                                                                                    --------------------------TPP_enzyme_C-2wvaZ09 Z:387-537                                                                                                                         ----------------------------- Pfam domains (1)
           Pfam domains (2) -TPP_enzyme_N-2wvaZ18 Z:3-179                                                                                                                                                     -------------------TPP_enzyme_M-2wvaZ02 Z:199-360                                                                                                                                    --------------------------TPP_enzyme_C-2wvaZ10 Z:387-537                                                                                                                         ----------------------------- Pfam domains (2)
           Pfam domains (3) -TPP_enzyme_N-2wvaZ19 Z:3-179                                                                                                                                                     -------------------TPP_enzyme_M-2wvaZ03 Z:199-360                                                                                                                                    --------------------------TPP_enzyme_C-2wvaZ11 Z:387-537                                                                                                                         ----------------------------- Pfam domains (3)
           Pfam domains (4) -TPP_enzyme_N-2wvaZ20 Z:3-179                                                                                                                                                     -------------------TPP_enzyme_M-2wvaZ04 Z:199-360                                                                                                                                    --------------------------TPP_enzyme_C-2wvaZ12 Z:387-537                                                                                                                         ----------------------------- Pfam domains (4)
           Pfam domains (5) -TPP_enzyme_N-2wvaZ21 Z:3-179                                                                                                                                                     -------------------TPP_enzyme_M-2wvaZ05 Z:199-360                                                                                                                                    --------------------------TPP_enzyme_C-2wvaZ13 Z:387-537                                                                                                                         ----------------------------- Pfam domains (5)
           Pfam domains (6) -TPP_enzyme_N-2wvaZ22 Z:3-179                                                                                                                                                     -------------------TPP_enzyme_M-2wvaZ06 Z:199-360                                                                                                                                    --------------------------TPP_enzyme_C-2wvaZ14 Z:387-537                                                                                                                         ----------------------------- Pfam domains (6)
           Pfam domains (7) -TPP_enzyme_N-2wvaZ23 Z:3-179                                                                                                                                                     -------------------TPP_enzyme_M-2wvaZ07 Z:199-360                                                                                                                                    --------------------------TPP_enzyme_C-2wvaZ15 Z:387-537                                                                                                                         ----------------------------- Pfam domains (7)
           Pfam domains (8) -TPP_enzyme_N-2wvaZ24 Z:3-179                                                                                                                                                     -------------------TPP_enzyme_M-2wvaZ08 Z:199-360                                                                                                                                    --------------------------TPP_enzyme_C-2wvaZ16 Z:387-537                                                                                                                         ----------------------------- Pfam domains (8)
         Sec.struct. author .eehhhhhhhhhhhh...eeee.....hhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhh...eeeeeee.hhhhh...............hhhhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhh..eeeeee......ee.ee..hhhhhh....hhhhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhh.eeeee.hhh.........eeeeehhhhh..hhhhhhhhh.eeeee................hhh.eeee...eeee..eeee..hhhhhhhhhhh.....hhhhhhhhhh.................hhhhhhhhhhh.....eeeee..hhhhhhhhh.......eeee........hhhhhhhhhhhhh...eeeeeeehhhhhhhh.hhhhhhhh....eeeeee...hhhhhh...hhhhh....hhhhhhhhhhh.........eeeee.hhhhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wva Z   2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 24)

Asymmetric Unit
1ad2wvaa2A:188-362
1bd2wvab2B:188-362
1cd2wvae2E:188-362
1dd2wvaf2F:188-362
1ed2wvav2V:188-362
1fd2wvax2X:188-362
1gd2wvay2Y:188-362
1hd2wvaz2Z:188-362
2ad2wvaa1A:2-187
2bd2wvaa3A:363-566
2cd2wvab1B:2-187
2dd2wvab3B:363-566
2ed2wvae1E:2-187
2fd2wvae3E:363-566
2gd2wvaf1F:2-187
2hd2wvaf3F:363-566
2id2wvav1V:2-187
2jd2wvav3V:363-566
2kd2wvax1X:1-187
2ld2wvax3X:363-566
2md2wvay1Y:2-187
2nd2wvay3Y:363-566
2od2wvaz1Z:2-187
2pd2wvaz3Z:363-566

(-) CATH Domains  (2, 24)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
1a2wvaA03A:355-548
1b2wvaY03Y:355-548
1c2wvaZ03Z:355-548
1d2wvaX01X:1-186
1e2wvaA01A:2-186
1f2wvaB01B:2-186
1g2wvaE01E:2-186
1h2wvaF01F:2-186
1i2wvaV01V:2-186
1j2wvaY01Y:2-186
1k2wvaZ01Z:2-186
1l2wvaB03B:355-548
1m2wvaE03E:355-548
1n2wvaF03F:355-548
1o2wvaV03V:355-548
1p2wvaX03X:355-548
2a2wvaA02A:188-350
2b2wvaY02Y:188-350
2c2wvaZ02Z:188-350
2d2wvaB02B:188-350
2e2wvaE02E:188-350
2f2wvaF02F:188-350
2g2wvaV02V:188-350
2h2wvaX02X:188-350

(-) Pfam Domains  (3, 24)

Asymmetric Unit
(-)
Clan: FAD_DHS (82)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,E,F,V,X,Y,Z   (PDC_ZYMMO | P06672)
molecular function
    GO:0016831    carboxy-lyase activity    Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004737    pyruvate decarboxylase activity    Catalysis of the reaction: a 2-oxo acid = an aldehyde + CO2.
    GO:0030976    thiamine pyrophosphate binding    Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PDC_ZYMMO | P066721zpd 2wvg 2wvh 3oe1 4zp1

(-) Related Entries Specified in the PDB File

1zpd PYRUVATE DECARBOXYLASE FROM ZYMOMONAS MOBILIS
2wvg STRUCTURAL INSIGHTS INTO THE PRE-REACTION STATE OF PYRUVATE DECARBOXYLASE FROM ZYMOMONAS MOBILIS
2wvh STRUCTURAL INSIGHTS INTO THE PRE-REACTION STATE OF PYRUVATE DECARBOXYLASE FROM ZYMOMONAS MOBILIS