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(-) Description

Title :  PYRUVATE DECARBOXYLASE FROM ZYMOMONAS MOBILIS
 
Authors :  G. Lu, D. Dobritzsch, G. Schneider
Date :  17 Apr 98  (Deposition) - 02 Feb 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.86
Chains :  Asym./Biol. Unit :  A,B,E,F
Keywords :  Alcohol Fermentation, Thiamin Diphosphate, Decarboxylase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Dobritzsch, S. Konig, G. Schneider, G. Lu
High Resolution Crystal Structure Of Pyruvate Decarboxylase From Zymomonas Mobilis. Implications For Substrate Activation In Pyruvate Decarboxylases.
J. Biol. Chem. V. 273 20196 1998
PubMed-ID: 9685367  |  Reference-DOI: 10.1074/JBC.273.32.20196
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PYRUVATE DECARBOXYLASE
    Chains: A, B, E, F
    EC Number: 4.1.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Collection: ATCC 29191
    Expression System Strain: SG13009/PREP4
    Expression System Taxid: 562
    Organism Scientific: ZYMOMONAS MOBILIS
    Organism Taxid: 542

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric/Biological Unit (3, 12)
No.NameCountTypeFull Name
1CIT4Ligand/IonCITRIC ACID
2DPX4Ligand/IonMONO-{4-[(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-AMINO]-2-HYDROXY-3-MERCAPTO-PENT-3-ENYL-PHOSPHONO}ESTER
3MG4Ligand/IonMAGNESIUM ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:440 , ASN A:467 , GLY A:469 , DPX A:600 , HOH A:611BINDING SITE FOR RESIDUE MG A 601
02AC2SOFTWAREASP B:440 , ASN B:467 , GLY B:469 , DPX B:600 , HOH B:611BINDING SITE FOR RESIDUE MG B 601
03AC3SOFTWAREASP E:440 , ASN E:467 , GLY E:469 , DPX E:600 , HOH E:611BINDING SITE FOR RESIDUE MG E 601
04AC4SOFTWAREASP F:440 , ASN F:467 , GLY F:469 , DPX F:600 , HOH F:611BINDING SITE FOR RESIDUE MG F 601
05AC5SOFTWAREASP A:390 , GLY A:413 , HIS A:414 , ILE A:415 , GLY A:439 , ASP A:440 , GLY A:441 , SER A:442 , ASN A:467 , GLY A:469 , TYR A:470 , THR A:471 , ILE A:472 , GLU A:473 , MG A:601 , HOH A:611 , HOH A:612 , HOH A:769 , HOH A:1256 , ALA B:25 , GLY B:26 , GLU B:50 , VAL B:75 , HIS B:114BINDING SITE FOR RESIDUE DPX A 600
06AC6SOFTWAREARG A:310 , ARG A:318 , PRO A:320 , SER A:321 , HOH A:709 , HOH A:746 , HOH A:789 , HOH A:1006 , HOH A:1049 , HIS F:150 , LYS F:153 , ARG F:157BINDING SITE FOR RESIDUE CIT A 610
07AC7SOFTWAREALA A:25 , GLY A:26 , GLU A:50 , VAL A:75 , HIS A:114 , ASP B:390 , GLY B:413 , HIS B:414 , ILE B:415 , GLY B:439 , ASP B:440 , GLY B:441 , SER B:442 , ASN B:467 , GLY B:469 , TYR B:470 , THR B:471 , ILE B:472 , GLU B:473 , MG B:601 , HOH B:611 , HOH B:612 , HOH B:842BINDING SITE FOR RESIDUE DPX B 600
08AC8SOFTWAREARG B:310 , ARG B:318 , PRO B:320 , SER B:321 , HOH B:688 , HOH B:782 , HOH B:819 , HOH B:861 , HOH B:1111 , HIS E:150 , LYS E:153 , ARG E:157BINDING SITE FOR RESIDUE CIT B 610
09AC9SOFTWAREASP E:390 , GLY E:413 , HIS E:414 , ILE E:415 , GLY E:439 , ASP E:440 , GLY E:441 , SER E:442 , ASN E:467 , GLY E:469 , TYR E:470 , THR E:471 , ILE E:472 , GLU E:473 , MG E:601 , HOH E:611 , HOH E:612 , HOH E:874 , ALA F:25 , GLY F:26 , GLU F:50 , VAL F:75 , HIS F:114BINDING SITE FOR RESIDUE DPX E 600
10BC1SOFTWAREHIS B:150 , LYS B:153 , ARG B:157 , ARG E:310 , ARG E:318 , PRO E:320 , SER E:321 , HOH E:656 , HOH E:814 , HOH E:851 , HOH E:894 , HOH E:1113BINDING SITE FOR RESIDUE CIT E 610
11BC2SOFTWAREALA E:25 , GLY E:26 , GLU E:50 , VAL E:75 , HIS E:114 , ASP F:390 , GLY F:413 , HIS F:414 , ILE F:415 , GLY F:439 , ASP F:440 , GLY F:441 , SER F:442 , ASN F:467 , GLY F:469 , TYR F:470 , THR F:471 , ILE F:472 , GLU F:473 , MG F:601 , HOH F:611 , HOH F:612 , HOH F:943 , HOH F:1240BINDING SITE FOR RESIDUE DPX F 600
12BC3SOFTWAREHIS A:150 , LYS A:153 , ARG A:157 , ARG F:310 , ARG F:318 , PRO F:320 , SER F:321 , HOH F:712 , HOH F:793 , HOH F:885 , HOH F:920 , HOH F:962BINDING SITE FOR RESIDUE CIT F 610

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZPD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZPD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZPD)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TPP_ENZYMESPS00187 Thiamine pyrophosphate enzymes signature.PDC_ZYMMO423-442
 
 
 		  4A:423-442
B:423-442
E:423-442
F:423-442

(-) Exons   (0, 0)

(no "Exon" information available for 1ZPD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:565
 aligned with PDC_ZYMMO | P06672 from UniProtKB/Swiss-Prot  Length:568

    Alignment length:565
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     
            PDC_ZYMMO     2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
               SCOP domains d1zpda2 A:2-187 Pyruvate decarboxylase                                                                                                                                                    d1zpda1 A:188-362 Pyruvate decarboxylase                                                                                                                                       d1zpda3 A:363-566 Pyruvate decarboxylase                                                                                                                                                                     SCOP domains
               CATH domains 1zpdA01 A:2-186  [code=3.40.50.970, no name defined]                                                                                                                                     -1zpdA02 A:188-350 TPP-binding domain                                                                                                                               ----1zpdA03 A:355-548  [code=3.40.50.970, no name defined]                                                                                                                                            ------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh...eeee...hhhhhhhhhhhh....eeee...hhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhh...eeeeeeee..hhh.................hhhhhhhhh...eeee..hhhhhhhhhhhhhhhhhh...eeeeeehhh..........hhhhh......hhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhh...eeeehhh..........eeeee.hhh....hhhhhhh..eeeee.................hhheeee...eeee..eeee...hhhhhhhhhhh.....hhhhhhhhh..................hhhhhhhhhhh....eeeee...hhhhhhhh.......eeee........hhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhh.....eeeeee....hhhhhh...hhh......hhhhhhhhh..........eeeee..hhhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zpd A   2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAKSFFPEENALYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGSLDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     


Chain B from PDB  Type:PROTEIN  Length:565
 aligned with PDC_ZYMMO | P06672 from UniProtKB/Swiss-Prot  Length:568

    Alignment length:565
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     
            PDC_ZYMMO     2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
               SCOP domains d1zpdb2 B:2-187 Pyruvate decarboxylase                                                                                                                                                    d1zpdb1 B:188-362 Pyruvate decarboxylase                                                                                                                                       d1zpdb3 B:363-566 Pyruvate decarboxylase                                                                                                                                                                     SCOP domains
               CATH domains 1zpdB01 B:2-186  [code=3.40.50.970, no name defined]                                                                                                                                     -1zpdB02 B:188-350 TPP-binding domain                                                                                                                               ----1zpdB03 B:355-548  [code=3.40.50.970, no name defined]                                                                                                                                            ------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh....eeee......hhhhhhhhh....eeee...hhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhh...eeeeeeee..hhh.................hhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhh...eeeeeehhh..........hhhhh......hhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhh...eeeehhh..........eeeee.hhh....hhhhhhh..eeeee....................eeee...eeee..eeee...hhhhhhhhhhh.....hhhhhhhhh..................hhhhhhhhhhh....eeeee...hhhhhhhh.......eeee........hhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhh.....eeeeee....hhhh.....hhh......hhhhhhhhh..........eeeee..hhhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zpd B   2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAKSFFPEENALYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGSLDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     


Chain E from PDB  Type:PROTEIN  Length:565
 aligned with PDC_ZYMMO | P06672 from UniProtKB/Swiss-Prot  Length:568

    Alignment length:565
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     
            PDC_ZYMMO     2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
               SCOP domains d1zpde2 E:2-187 Pyruvate decarboxylase                                                                                                                                                    d1zpde1 E:188-362 Pyruvate decarboxylase                                                                                                                                       d1zpde3 E:363-566 Pyruvate decarboxylase                                                                                                                                                                     SCOP domains
               CATH domains 1zpdE01 E:2-186  [code=3.40.50.970, no name defined]                                                                                                                                     -1zpdE02 E:188-350 TPP-binding domain                                                                                                                               ----1zpdE03 E:355-548  [code=3.40.50.970, no name defined]                                                                                                                                            ------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh...eeee...hhhhhhhhhhhh....eeee...hhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhh...eeeeeeee..hhh.................hhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhh...eeeeeehhh..........hhhhh......hhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhh...eeeehhh..........eeeee.hhh....hhhhhhh..eeeee.................hhheeee...eeee..eeee...hhhhhhhhhhh.....hhhhhhhhh..................hhhhhhhhhhh....eeeee...hhhhhhhh.......eeee........hhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhh.....eeeeee....hhhhhh...hhh......hhhhhhhhh..........eeeee..hhhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zpd E   2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAKSFFPEENALYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGSLDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     


Chain F from PDB  Type:PROTEIN  Length:565
 aligned with PDC_ZYMMO | P06672 from UniProtKB/Swiss-Prot  Length:568

    Alignment length:565
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     
            PDC_ZYMMO     2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
               SCOP domains d1zpdf2 F:2-187 Pyruvate decarboxylase                                                                                                                                                    d1zpdf1 F:188-362 Pyruvate decarboxylase                                                                                                                                       d1zpdf3 F:363-566 Pyruvate decarboxylase                                                                                                                                                                     SCOP domains
               CATH domains 1zpdF01 F:2-186  [code=3.40.50.970, no name defined]                                                                                                                                     -1zpdF02 F:188-350 TPP-binding domain                                                                                                                               ----1zpdF03 F:355-548  [code=3.40.50.970, no name defined]                                                                                                                                            ------------------ CATH domains
           Pfam domains (1) -TPP_enzyme_N-1zpdF09 F:3-179                                                                                                                                                     -------------------TPP_enzyme_M-1zpdF01 F:199-360                                                                                                                                    --------------------------TPP_enzyme_C-1zpdF05 F:387-537                                                                                                                         ----------------------------- Pfam domains (1)
           Pfam domains (2) -TPP_enzyme_N-1zpdF10 F:3-179                                                                                                                                                     -------------------TPP_enzyme_M-1zpdF02 F:199-360                                                                                                                                    --------------------------TPP_enzyme_C-1zpdF06 F:387-537                                                                                                                         ----------------------------- Pfam domains (2)
           Pfam domains (3) -TPP_enzyme_N-1zpdF11 F:3-179                                                                                                                                                     -------------------TPP_enzyme_M-1zpdF03 F:199-360                                                                                                                                    --------------------------TPP_enzyme_C-1zpdF07 F:387-537                                                                                                                         ----------------------------- Pfam domains (3)
           Pfam domains (4) -TPP_enzyme_N-1zpdF12 F:3-179                                                                                                                                                     -------------------TPP_enzyme_M-1zpdF04 F:199-360                                                                                                                                    --------------------------TPP_enzyme_C-1zpdF08 F:387-537                                                                                                                         ----------------------------- Pfam domains (4)
         Sec.struct. author ...hhhhhhhhhhh....eeee...hhhhhhhhhhhh....eeee...hhhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhh...eeeeeeee..hhh.................hhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhh...eeeeeehhh..........hhhhh......hhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhh...eeeehhh..........eeeee.hhh....hhhhhhh..eeeee.................hhheeee...eeee..eeee...hhhhhhhhhhh.....hhhhhhhhh..................hhhhhhhhhhh....eeeee...hhhhhhhh.......eeee........hhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhh.....eeeeee....hhhhhh...hhh......hhhhhhhhh..........eeeee..hhhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPP_ENZYMES         ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zpd F   2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPASALFNDEASDEASLNAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAKSFFPEENALYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGSLDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAKTGGELAEAIKVALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPVNK 566
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561
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 Classification and Annotation

(-) SCOP Domains  (3, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (3, 12)

Asymmetric/Biological Unit
(-)
Clan: FAD_DHS (82)
(-)
Clan: THDP-binding (106)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,E,F   (PDC_ZYMMO | P06672)
molecular function
    GO:0016831    carboxy-lyase activity    Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004737    pyruvate decarboxylase activity    Catalysis of the reaction: a 2-oxo acid = an aldehyde + CO2.
    GO:0030976    thiamine pyrophosphate binding    Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases.

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  1zpd
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PDC_ZYMMO | P06672: 2wva 2wvg 2wvh 3oe1 4zp1

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1ZPD)