2WUV - JenaLib

Title :   CRYSTALLOGRAPHIC ANALYSIS OF COUNTER-ION EFFECTS ON SUBTILISIN ENZYMATIC ACTION IN ACETONITRILE

Authors :   M. Cianci, B. Tomaszewki, J. R. Helliwell, P. J. Halling

Date :   09 Oct 09 (Deposition) - 08 Dec 10 (Release) - 08 Dec 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.24

Chains :   Asym./Biol. Unit : A

Keywords :   Serine Protease, Metal-Binding, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Cianci, B. Tomaszewski, J. R. Helliwell, P. J. Halling
Crystallographic Analysis Of Counterion Effects On Subtilisin Enzymatic Action In Acetonitrile.
J. Am. Chem. Soc. V. 132 2293 2010
PubMed-ID: 20099851 | Reference-DOI: 10.1021/JA908703C

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 26)

Sites (26, 26)

Asymmetric Unit (26, 26)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLN A:2 , SER A:184 , ASN A:185 , LEU A:257 , TYR A:263	BINDING SITE FOR RESIDUE CL A1276
02	AC2	SOFTWARE	ASN A:97 , ALA A:254 , LYS A:265	BINDING SITE FOR RESIDUE CL A1277
03	AC3	SOFTWARE	ASN A:240 , SER A:242 , GLN A:245	BINDING SITE FOR RESIDUE CL A1278
04	AC4	SOFTWARE	LYS A:170	BINDING SITE FOR RESIDUE CL A1301
05	AC5	SOFTWARE	ASN A:158 , CS A:1292	BINDING SITE FOR RESIDUE CL A1279
06	AC6	SOFTWARE	TYR A:6 , TYR A:256	BINDING SITE FOR RESIDUE CL A1280
07	AC7	SOFTWARE	SER A:99 , ASN A:248	BINDING SITE FOR RESIDUE CL A1281
08	AC8	SOFTWARE	PRO A:40 , LEU A:42 , LEU A:75 , CS A:1283	BINDING SITE FOR RESIDUE CL A1282
09	AC9	SOFTWARE	ALA A:37 , HIS A:39 , LEU A:42 , CL A:1282	BINDING SITE FOR RESIDUE CS A1283
10	BC1	SOFTWARE	GLY A:193 , ALA A:194 , LEU A:196 , SER A:260	BINDING SITE FOR RESIDUE CS A1284
11	BC2	SOFTWARE	GLY A:61 , SER A:98 , HOH A:2041	BINDING SITE FOR RESIDUE CS A1285
12	BC3	SOFTWARE	GLN A:2 , ASN A:77 , ASN A:185	BINDING SITE FOR RESIDUE CS A1286
13	BC4	SOFTWARE	ALA A:52 , TYR A:256 , CCN A:1299	BINDING SITE FOR RESIDUE CS A1287
14	BC5	SOFTWARE	TYR A:143 , SER A:244 , HOH A:2101	BINDING SITE FOR RESIDUE CS A1288
15	BC6	SOFTWARE	PRO A:239 , LEU A:241 , HOH A:2052	BINDING SITE FOR RESIDUE CS A1289
16	BC7	SOFTWARE	ALA A:254 , HOH A:2040	BINDING SITE FOR RESIDUE CS A1290
17	BC8	SOFTWARE	ALA A:1 , THR A:3 , GLY A:80 , HOH A:2086	BINDING SITE FOR RESIDUE CS A1291
18	BC9	SOFTWARE	SER A:156 , ASN A:158 , CL A:1279	BINDING SITE FOR RESIDUE CS A1292
19	CC1	SOFTWARE	SER A:182 , ASN A:183	BINDING SITE FOR RESIDUE CS A1293
20	CC2	SOFTWARE	GLN A:2 , ASP A:41 , LEU A:75 , ASN A:77 , THR A:79 , VAL A:81	BINDING SITE FOR RESIDUE CA A1294
21	CC3	SOFTWARE	ALA A:169 , TYR A:171 , VAL A:174 , HOH A:2070 , HOH A:2083	BINDING SITE FOR RESIDUE NA A1295
22	CC4	SOFTWARE	GLY A:127 , GLY A:154 , SER A:221 , CCN A:1297 , HOH A:2065	BINDING SITE FOR RESIDUE CCN A1296
23	CC5	SOFTWARE	ASN A:155 , GLY A:219 , THR A:220 , SER A:221 , CCN A:1296 , HOH A:2095	BINDING SITE FOR RESIDUE CCN A1297
24	CC6	SOFTWARE	ASN A:62 , ASN A:117 , HOH A:2110	BINDING SITE FOR RESIDUE CCN A1298
25	CC7	SOFTWARE	VAL A:51 , ALA A:52 , TYR A:256 , CS A:1287 , HOH A:2040 , HOH A:2111 , HOH A:2112	BINDING SITE FOR RESIDUE CCN A1299
26	CC8	SOFTWARE	SER A:101 , GLY A:102 , GLY A:127 , HOH A:2055 , HOH A:2113	BINDING SITE FOR RESIDUE CCN A1300

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (3, 3)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:274
 aligned with SUBT_BACLI | P00780 from UniProtKB/Swiss-Prot  Length:379

    Alignment length:274
                                   115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375    
           SUBT_BACLI   106 AQTVPYGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGTYSGIVSGIEWATTNGMDVINMSLGGPSGSTAMKQAVDNAYARGVVVVAAAGNSGSSGNTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTSTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFYYGKGLINVEAAAQ 379
               SCOP domains d2wuva_ A: automated matches                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------Peptidase_S8-2wuvA01 A:27-275                                                                                                                                                                                                                            Pfam domains
         Sec.struct. author ...........hhhhhhh.....eeeeeeeee.....................................................eeeeeeee................hhhhhhh...eeee.......hhhhhhhhhhhhhh..eeeee......................eee............................eeee...eeee......hhhhhh.hhhhhhhhh...hhhhhhhhhhhh...............hhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------SUBTILASE_AS-----------------------SUBTILASE_H------------------------------------------------------------------------------------------------------------------------------------------------SUBTILASE_S---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wuv A   1 AQTVPYGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFYYGKGLINVEAAAQ 275
                                    10        20        30        40        50    ||  61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271    
                                                                                 55|                                                                                                                                                                                                                          
                                                                                  57

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (SUBT_BACLI | P00780)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0030435	sporulation resulting in formation of a cellular spore	The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1av7	SUBTILISIN CARLSBERG L-NAPHTHYL-1-ACETAMIDO BORONIC ACID INHIBITOR COMPLEX
1avt	SUBTILISIN CARLSBERG D-PARA-CHLOROPHENYL-1- ACETAMIDO BORONIC ACID INHIBITOR COMPLEX
1c3l	SUBTILISIN-CARLSBERG COMPLEXED WITH XENON (8 BAR)
1oyv	CRYSTAL STRUCTURE OF TOMATO INHIBITOR-II IN A TERNARYCOMPLEX WITH SUBTILISIN CARLSBERG
1r0r	1.1 ANGSTROM RESOLUTION STRUCTURE OF THE COMPLEX BETWEENTHE PROTEIN INHIBITOR, OMTKY3, AND THE SERINE PROTEASE,SUBTILISIN CARLSBERG
1sbc	SUBTILISIN CARLSBERG (SUBTILOPEPTIDASE A)
1scn	SUBTILISIN CARLSBERG COMPLEXED WITH N-(TERT- BUTOXYCARBONYL-ALANYL-PROLYL-PHENYLALANYL)- O- BENZOYL HYDROXYLAMINE
1sel	SELENOSUBTILISIN (CHEMICALLY ENGINEERED MUTANT WITH SER 221 REPLACED BY SELENOCYSTEINE)
1vsb	SUBTILISIN CARLSBERG L-PARA-CHLOROPHENYL-1- ACETAMIDO BORONIC ACID INHIBITOR COMPLEX
1yu6	CRYSTAL STRUCTURE OF THE SUBTILISIN CARLSBERG :OMTKY3 COMPLEX
2sec	SUBTILISIN CARLSBERG COMPLEX WITH GENETICALLY- ENGINEERED N-ACETYL EGLIN-C
2wuw	CRYSTALLOGRAPHIC ANALYSIS OF COUNTER-ION EFFECTS ON SUBTILISIN ENZYMATIC ACTION IN ACETONITRILE (NATIVE DATA)
3vsb	SUBTILISIN CARLSBERG D-NAPHTHYL-1-ACETAMIDO BORONIC ACID INHIBITOR COMPLEX

Description