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(-) Description

Title :  EST1E FROM BUTYRIVIBRIO PROTEOCLASTICUS
 
Authors :  D. C. Goldstone, V. L. Arcus
Date :  17 Sep 09  (Deposition) - 19 Jan 10  (Release) - 15 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Esterase, Hydrolase, Ferulic Acid Esterase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. C. Goldstone, S. G. Villas-Boas, M. Till, W. J. Kelly, G. T. Attwood, V. L. Arcus
Structural And Functional Characterization Of A Promiscuous Feruloyl Esterase (Est1E) From The Rumen Bacterium Butyrivibrio Proteoclasticus.
Proteins V. 78 1457 2010
PubMed-ID: 20058325  |  Reference-DOI: 10.1002/PROT.22662

(-) Compounds

Molecule 1 - EST1E
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: CLOSTRIDIUM PROTEOCLASTICUM
    Organism Taxid: 43305

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2PO46Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2PO43Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2PO43Ligand/IonPHOSPHATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY D:32 , PHE D:33 , THR D:34 , SER D:105 , GLN D:106 , ARG D:163 , PO4 D:1250 , HOH D:2191 , HOH D:2192 , HOH D:2193BINDING SITE FOR RESIDUE PO4 D1249
02AC2SOFTWAREGLY B:32 , PHE B:33 , THR B:34 , SER B:105 , GLN B:106 , PO4 B:1250 , HOH B:2208 , HOH B:2209 , HOH B:2210BINDING SITE FOR RESIDUE PO4 B1249
03AC3SOFTWAREHIS D:31 , GLY D:32 , PHE D:33 , THR D:34 , GLY D:35 , GLU D:39 , HIS D:41 , HIS D:104 , SER D:105 , PO4 D:1249 , HOH D:2193 , HOH D:2194BINDING SITE FOR RESIDUE PO4 D1250
04AC4SOFTWAREGLY C:32 , PHE C:33 , SER C:105 , GLN C:106 , HIS C:225 , GOL C:1249 , HOH C:2255BINDING SITE FOR RESIDUE PO4 C1248
05AC5SOFTWAREHIS B:31 , GLY B:32 , PHE B:33 , THR B:34 , GLY B:35 , GLU B:39 , HIS B:41 , HIS B:104 , SER B:105 , PO4 B:1249 , HOH B:2208 , HOH B:2211BINDING SITE FOR RESIDUE PO4 B1250
06AC6SOFTWAREGLY A:32 , PHE A:33 , SER A:105 , GLN A:106 , HIS A:225 , HOH A:2213BINDING SITE FOR RESIDUE PO4 A1249
07AC7SOFTWAREHOH A:2214 , HOH A:2215 , HOH A:2216 , GLU B:203 , ALA B:207 , HOH B:2165BINDING SITE FOR RESIDUE GOL A1250
08AC8SOFTWAREPHE C:33 , THR C:34 , GLY C:35 , GLU C:39 , HIS C:225 , CYS C:226 , PO4 C:1248 , HOH C:2257 , HOH C:2258 , HOH C:2259BINDING SITE FOR RESIDUE GOL C1249
09AC9SOFTWARETYR D:13 , GLU D:38 , ARG D:58 , HOH D:2034 , HOH D:2195BINDING SITE FOR RESIDUE GOL D1251
10BC1SOFTWARETYR B:13 , GLU B:38 , ARG B:58 , HOH B:2043 , HOH B:2212 , HOH B:2213BINDING SITE FOR RESIDUE GOL B1251
11BC2SOFTWAREHOH C:2096 , HOH C:2104 , CYS D:5 , ASP D:6 , HOH D:2071 , HOH D:2196 , HOH D:2197BINDING SITE FOR RESIDUE GOL D1252
12BC3SOFTWAREARG A:119 , LYS A:184 , ARG B:139 , GLU B:151 , GLN B:174 , HOH B:2214BINDING SITE FOR RESIDUE GOL B1252

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WTM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WTM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WTM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WTM)

(-) Exons   (0, 0)

(no "Exon" information available for 2WTM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:250
 aligned with D2YW37_9FIRM | D2YW37 from UniProtKB/TrEMBL  Length:251

    Alignment length:250
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251
         D2YW37_9FIRM     2 GAMYIDCDGIKLNAYLDMPKNNPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGDTHCYDHHLELVTEAVKEFMLEQIAK 251
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....eeeeeee........eeeeeee........hhhhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhhhhhhhh....eeeeeee......hhhhhhhhhh...eeee.......hhhhhhhh................ee.....ee..hhhhhhh..hhhhhhhhh...eeeee.......hhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wtm A  -1 GAMYIDCDGIKLNAYLDMPKNNPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGDTHCYDHHLELVTEAVKEFMLEQIAK 248
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248


Chain B from PDB  Type:PROTEIN  Length:242
 aligned with D2YW37_9FIRM | D2YW37 from UniProtKB/TrEMBL  Length:251

    Alignment length:251
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250 
         D2YW37_9FIRM     1 SGAMYIDCDGIKLNAYLDMPKNNPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGDTHCYDHHLELVTEAVKEFMLEQIAK 251
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee....eeeeeee........eeeeeee........hhhhhhhhhhhhhh..eeeee....---------..hhhhhhhhhhhhhhhhhh...eeeeeee......hhhhhhhhhh...eeee.......hhhhhhhh......ee........ee.....ee..hhhhhhh..hhhhhhhhh...eeeee.......hhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wtm B  -2 SGAMYIDCDGIKLNAYLDMPKNNPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYG---------DHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGDTHCYDHHLELVTEAVKEFMLEQIAK 248
                                     7        17        27        37        47        57     |   -     |  77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247 
                                                                                            63        73                                                                                                                                                                               


Chain C from PDB  Type:PROTEIN  Length:250
 aligned with D2YW37_9FIRM | D2YW37 from UniProtKB/TrEMBL  Length:251

    Alignment length:250
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
         D2YW37_9FIRM     1 SGAMYIDCDGIKLNAYLDMPKNNPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGDTHCYDHHLELVTEAVKEFMLEQIA 250
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee....eeeeeee........eeeeeee........hhhhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhhhhhhhh....eeeeeee......hhhhhhhhhh...eeee.......hhhhhhhh................ee.....ee..hhhhhhh..hhhhhhhhh...eeeee.......hhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wtm C  -2 SGAMYIDCDGIKLNAYLDMPKNNPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGDTHCYDHHLELVTEAVKEFMLEQIA 247
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247


Chain D from PDB  Type:PROTEIN  Length:243
 aligned with D2YW37_9FIRM | D2YW37 from UniProtKB/TrEMBL  Length:251

    Alignment length:251
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250 
         D2YW37_9FIRM     1 SGAMYIDCDGIKLNAYLDMPKNNPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGDTHCYDHHLELVTEAVKEFMLEQIAK 251
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------------Abhydrolase_6-2wtmD01 D:27-238                                                                                                                                                                                      ---------- Pfam domains (1)
           Pfam domains (2) -----------------------------Abhydrolase_6-2wtmD02 D:27-238                                                                                                                                                                                      ---------- Pfam domains (2)
           Pfam domains (3) -----------------------------Abhydrolase_6-2wtmD03 D:27-238                                                                                                                                                                                      ---------- Pfam domains (3)
           Pfam domains (4) -----------------------------Abhydrolase_6-2wtmD04 D:27-238                                                                                                                                                                                      ---------- Pfam domains (4)
         Sec.struct. author ...eeee....eeeeeee........eeeeeee........hhhhhhhhhhhhhh..eeeee.....--------..hhhhhhhhhhhhhhhhh....eeeeeee......hhhhhhhhhh...eeee.......hhhhhhhh................ee.....ee..hhhhhhh..hhhhhhhhh...eeeee.......hhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wtm D  -2 SGAMYIDCDGIKLNAYLDMPKNNPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGH--------DHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGDTHCYDHHLELVTEAVKEFMLEQIAK 248
                                     7        17        27        37        47        57      |  -     |  77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247 
                                                                                             64       73
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WTM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WTM)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: AB_hydrolase (347)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2WTM)

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 Related Entries

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        D2YW37_9FIRM | D2YW37: 2wtn

(-) Related Entries Specified in the PDB File

2wtn FERULIC ACID BOUND TO EST1E FROM BUTYRIVIBRIO PROTEOCLASTICUS