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(-) Description

Title :  FERULIC ACID BOUND TO EST1E FROM BUTYRIVIBRIO PROTEOCLASTICUS
 
Authors :  D. C. Goldstone, V. L. Arcus
Date :  17 Sep 09  (Deposition) - 19 Jan 10  (Release) - 15 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Esterase, Hydrolase, Ferulic Acid Esterase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. C. Goldstone, S. G. Villas-Boas, M. Till, W. J. Kelly, G. T. Attwood, V. L. Arcus
Structural And Functional Characterization Of A Promiscuous Feruloyl Esterase (Est1E) From The Rumen Bacterium Butyrivibrio Proteoclasticus.
Proteins V. 78 1457 2010
PubMed-ID: 20058325  |  Reference-DOI: 10.1002/PROT.22662

(-) Compounds

Molecule 1 - EST1E
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: CLOSTRIDIUM PROTEOCLASTICUM
    Organism Taxid: 43305

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1FER2Ligand/Ion3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOICACID
2GOL6Ligand/IonGLYCEROL
3PO41Ligand/IonPHOSPHATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:31 , GLY A:32 , GLU A:39 , HIS A:41 , HIS A:104 , SER A:105 , FER A:1250BINDING SITE FOR RESIDUE GOL A1249
2AC2SOFTWAREGLY B:32 , PHE B:33 , SER B:105 , GLN B:106 , MET B:133 , LEU B:143 , LEU B:144 , TRP B:160 , TYR B:169 , HIS B:225 , HOH B:2089 , HOH B:2090BINDING SITE FOR RESIDUE FER B1249
3AC3SOFTWAREGLY A:32 , PHE A:33 , THR A:34 , SER A:105 , GLN A:106 , TRP A:160 , GOL A:1249BINDING SITE FOR RESIDUE FER A1250
4AC4SOFTWAREGLN A:174 , THR A:175 , HOH A:2068 , HOH A:2069 , ARG B:119 , ASP B:180 , PHE B:181 , HOH B:2091BINDING SITE FOR RESIDUE GOL B1250
5AC5SOFTWAREASP A:155 , LYS A:166 , GLY A:167 , ASN A:168 , HOH A:2105 , HOH A:2106 , ASP B:88 , LYS B:91 , HOH B:2034BINDING SITE FOR RESIDUE GOL A1251
6AC6SOFTWAREASP A:88 , LYS A:91 , ASP B:155 , LYS B:166 , GLY B:167 , ASN B:168 , HOH B:2092BINDING SITE FOR RESIDUE GOL B1251
7AC7SOFTWAREHOH A:2027 , ASP B:4 , ASP B:6 , ALA B:85 , HOH B:2033 , HOH B:2093 , HOH B:2094BINDING SITE FOR RESIDUE GOL B1252
8AC8SOFTWAREARG A:119 , ASP A:180 , PHE A:181 , HOH A:2107 , HOH A:2108 , GLN B:174 , THR B:175 , HOH B:2061BINDING SITE FOR RESIDUE GOL A1252
9AC9SOFTWAREGLY A:145 , LEU A:146 , LYS A:147 , LYS B:147 , ASP B:149 , PRO B:150BINDING SITE FOR RESIDUE PO4 A1253

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WTN)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asn B:20 -Pro B:21

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WTN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WTN)

(-) Exons   (0, 0)

(no "Exon" information available for 2WTN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:249
 aligned with D2YW37_9FIRM | D2YW37 from UniProtKB/TrEMBL  Length:251

    Alignment length:249
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242         
         D2YW37_9FIRM     3 AMYIDCDGIKLNAYLDMPKNNPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGDTHCYDHHLELVTEAVKEFMLEQIAK 251
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeeeeee........eeeeeee........hhhhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhhhhhhhh....eeeeeee......hhhhhhhhhh...eeee.......hhhhhhhh................ee.....ee..hhhhhhh..hhhhhhhhh...eeeee.......hhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wtn A   0 AMYIDCDGIKLNAYLDMPKNNPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGDTHCYDHHLELVTEAVKEFMLEQIAK 248
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239         


Chain B from PDB  Type:PROTEIN  Length:250
 aligned with D2YW37_9FIRM | D2YW37 from UniProtKB/TrEMBL  Length:251

    Alignment length:250
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251
         D2YW37_9FIRM     2 GAMYIDCDGIKLNAYLDMPKNNPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGDTHCYDHHLELVTEAVKEFMLEQIAK 251
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------Abhydrolase_6-2wtnB01 B:27-238                                                                                                                                                                                      ---------- Pfam domains (1)
           Pfam domains (2) ----------------------------Abhydrolase_6-2wtnB02 B:27-238                                                                                                                                                                                      ---------- Pfam domains (2)
         Sec.struct. author ..eeee....eeeeeee........eeeeeee........hhhhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhhhhhhhh....eeeeeee......hhhhhhhhhh...eeee.......hhhhhhhh................ee.....ee..hhhhhhh..hhhhhhhhh...eeeee.......hhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wtn B  -1 GAMYIDCDGIKLNAYLDMPKNNPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGDTHCYDHHLELVTEAVKEFMLEQIAK 248
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WTN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WTN)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: AB_hydrolase (347)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2WTN)

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(-) Related Entries Specified in the PDB File

2wtm EST1E FROM BUTYRIVIBRIO PROTEOCLASTICUS