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(-) Description

Title :  HIGH-RESOLUTION STRUCTURE OF THE ROTOR RING FROM A PROTON DEPENDENT ATP SYNTHASE
 
Authors :  D. Pogoryelov, O. Yildiz, J. D. Faraldo-Gomez, T. Meier
Date :  11 May 09  (Deposition) - 29 Sep 09  (Release) - 11 May 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.13
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B,C,D,E  (3x)
Keywords :  Hydrolase, F1Fo Atp Synthase Rotor, Ion Proton-Translocation, Ion Transport, Transmembrane, C-Ring Structure, Spirulina Platensis, Hydrogen Ion Transport, Membrane Protein Complex, Cf(0), Membrane, Lipid-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Pogoryelov, O. Yildiz, J. D. Faraldo-Gomez, T. Meier
High-Resolution Structure Of The Rotor Ring Of A Proton-Dependent Atp Synthase.
Nat. Struct. Mol. Biol. V. 16 1068 2009
PubMed-ID: 19783985  |  Reference-DOI: 10.1038/NSMB.1678

(-) Compounds

Molecule 1 - ATP SYNTHASE C CHAIN
    Chains: A, B, C, D, E
    EC Number: 3.6.3.14
    Organism Scientific: ARTHROSPIRA PLATENSIS
    Organism Taxid: 118562
    Synonym: C15_RING

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (3x): ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 45)

Asymmetric Unit (2, 45)
No.NameCountTypeFull Name
1CVM40Ligand/IonCYMAL-4
2FME5Mod. Amino AcidN-FORMYLMETHIONINE
Biological Unit 1 (2, 135)
No.NameCountTypeFull Name
1CVM120Ligand/IonCYMAL-4
2FME15Mod. Amino AcidN-FORMYLMETHIONINE

(-) Sites  (35, 35)

Asymmetric Unit (35, 35)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:3 , ASN A:4 , LEU A:5 , HOH A:2028 , LEU B:5 , CVM B:102 , CVM E:102BINDING SITE FOR RESIDUE CVM A 102
02AC2SOFTWAREALA A:63 , CVM A:104BINDING SITE FOR RESIDUE CVM A 103
03AC3SOFTWAREALA A:63 , CVM A:103BINDING SITE FOR RESIDUE CVM A 104
04AC4SOFTWAREILE A:66BINDING SITE FOR RESIDUE CVM A 106
05AC5SOFTWAREVAL A:70BINDING SITE FOR RESIDUE CVM A 108
06AC6SOFTWAREVAL A:74BINDING SITE FOR RESIDUE CVM A 109
07AC7SOFTWARECVM A:102 , FME B:1 , ALA B:9 , LEU C:5 , CVM C:102BINDING SITE FOR RESIDUE CVM B 102
08AC8SOFTWAREFME B:1 , SER B:3 , CVM B:102 , ASN C:4 , LEU C:5 , LEU D:5 , CVM D:102BINDING SITE FOR RESIDUE CVM C 102
09AC9SOFTWARETYR B:67BINDING SITE FOR RESIDUE CVM A 107
10BC1SOFTWAREGLU A:62 , ALA B:59 , ALA B:63BINDING SITE FOR RESIDUE CVM B 103
11BC2SOFTWAREILE B:66BINDING SITE FOR RESIDUE CVM B 104
12BC3SOFTWAREALA B:59 , GLU B:62BINDING SITE FOR RESIDUE CVM B 108
13BC4SOFTWARELEU B:73 , CVM B:107BINDING SITE FOR RESIDUE CVM B 109
14BC5SOFTWAREALA C:63BINDING SITE FOR RESIDUE CVM C 103
15BC6SOFTWARECVM B:109 , CVM B:110 , TYR C:67BINDING SITE FOR RESIDUE CVM B 107
16BC7SOFTWARECVM B:107 , CVM C:104BINDING SITE FOR RESIDUE CVM B 110
17BC8SOFTWAREILE C:66BINDING SITE FOR RESIDUE CVM C 106
18BC9SOFTWARELEU C:69 , LEU C:73 , CVM C:107BINDING SITE FOR RESIDUE CVM C 108
19CC1SOFTWARELEU C:73BINDING SITE FOR RESIDUE CVM C 109
20CC2SOFTWAREILE C:66 , CVM C:108BINDING SITE FOR RESIDUE CVM C 107
21CC3SOFTWARECVM C:102 , ASN D:4 , LEU D:5 , ALA D:8 , ALA D:9 , HOH D:2025 , LEU E:5 , CVM E:102BINDING SITE FOR RESIDUE CVM D 102
22CC4SOFTWAREGLU C:62 , ALA D:63BINDING SITE FOR RESIDUE CVM D 103
23CC5SOFTWAREILE D:66BINDING SITE FOR RESIDUE CVM D 104
24CC6SOFTWAREVAL D:70 , CVM E:103BINDING SITE FOR RESIDUE CVM D 108
25CC7SOFTWARELEU D:73BINDING SITE FOR RESIDUE CVM D 109
26CC8SOFTWARELEU A:5 , CVM A:102 , HOH A:2028 , CVM D:102 , ASN E:4 , LEU E:5BINDING SITE FOR RESIDUE CVM E 102
27CC9SOFTWAREALA E:63 , CVM E:103BINDING SITE FOR RESIDUE CVM D 107
28DC1SOFTWAREILE E:66 , TYR E:67BINDING SITE FOR RESIDUE CVM E 104
29DC2SOFTWAREALA E:59BINDING SITE FOR RESIDUE CVM E 106
30DC3SOFTWARECVM E:107BINDING SITE FOR RESIDUE CVM E 108
31DC4SOFTWARECVM D:107 , CVM D:108 , CVM D:110 , TYR E:67BINDING SITE FOR RESIDUE CVM E 103
32DC5SOFTWARECVM E:108BINDING SITE FOR RESIDUE CVM E 107
33DC6SOFTWARELEU A:69BINDING SITE FOR RESIDUE CVM A 110
34DC7SOFTWARECVM B:110BINDING SITE FOR RESIDUE CVM C 104
35DC8SOFTWARELEU D:69 , CVM E:103BINDING SITE FOR RESIDUE CVM D 110

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WIE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WIE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WIE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WIE)

(-) Exons   (0, 0)

(no "Exon" information available for 2WIE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:82
 aligned with A5HEI4_ARTPT | A5HEI4 from UniProtKB/TrEMBL  Length:82

    Alignment length:82
                                    10        20        30        40        50        60        70        80  
          A5HEI4_ARTPT    1 MESNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPFV 82
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains -2wieA01 A:2-79 F1FO ATP Synthase                                              --- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh........................hhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  2wie A  1 mESNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPFV 82
                            |       10        20        30        40        50        60        70        80  
                            |                                                                                 
                            1-FME                                                                             


Chain B from PDB  Type:PROTEIN  Length:82
 aligned with A5HEI4_ARTPT | A5HEI4 from UniProtKB/TrEMBL  Length:82

    Alignment length:82
                                    10        20        30        40        50        60        70        80  
          A5HEI4_ARTPT    1 MESNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPFV 82
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains -2wieB01 B:2-79 F1FO ATP Synthase                                              --- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh........................hhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  2wie B  1 mESNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPFV 82
                            |       10        20        30        40        50        60        70        80  
                            1-FME                                                                             


Chain C from PDB  Type:PROTEIN  Length:82
 aligned with A5HEI4_ARTPT | A5HEI4 from UniProtKB/TrEMBL  Length:82

    Alignment length:82
                                    10        20        30        40        50        60        70        80  
          A5HEI4_ARTPT    1 MESNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPFV 82
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains -2wieC01 C:2-79 F1FO ATP Synthase                                              --- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh........................hhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  2wie C  1 mESNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPFV 82
                            |       10        20        30        40        50        60        70        80  
                            1-FME                                                                             


Chain D from PDB  Type:PROTEIN  Length:82
 aligned with A5HEI4_ARTPT | A5HEI4 from UniProtKB/TrEMBL  Length:82

    Alignment length:82
                                    10        20        30        40        50        60        70        80  
          A5HEI4_ARTPT    1 MESNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPFV 82
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains -2wieD01 D:2-79 F1FO ATP Synthase                                              --- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh........................hhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  2wie D  1 mESNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPFV 82
                            |       10        20        30        40        50        60        70        80  
                            1-FME                                                                             


Chain E from PDB  Type:PROTEIN  Length:82
 aligned with A5HEI4_ARTPT | A5HEI4 from UniProtKB/TrEMBL  Length:82

    Alignment length:82
                                    10        20        30        40        50        60        70        80  
          A5HEI4_ARTPT    1 MESNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPFV 82
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains -2wieE01 E:2-79 F1FO ATP Synthase                                              --- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh........................hhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  2wie E  1 mESNLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPFV 82
                            |       10        20        30        40        50        60        70        80  
                            1-FME
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WIE)

(-) CATH Domains  (1, 5)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2WIE)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E   (A5HEI4_ARTPT | A5HEI4)
molecular function
    GO:0015078    hydrogen ion transmembrane transporter activity    Enables the transfer of hydrogen ions from one side of a membrane to the other.
biological process
    GO:0015991    ATP hydrolysis coupled proton transport    The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
    GO:0015986    ATP synthesis coupled proton transport    The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0045263    proton-transporting ATP synthase complex, coupling factor F(o)    All non-F1 subunits of a hydrogen-transporting ATP synthase, including integral and peripheral membrane proteins.
    GO:0033177    proton-transporting two-sector ATPase complex, proton-transporting domain    A protein complex that forms part of a proton-transporting two-sector ATPase complex and carries out proton transport across a membrane. The proton-transporting domain (F0, V0, or A0) includes integral and peripheral membrane proteins.

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