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(-) Description

Title :  CRYSTAL STRUCTURE OF THE KINASE DOMAIN OF CRYPTOSPORIDIUM PARVUM CALCIUM DEPENDENT PROTEIN KINASE IN COMPLEX WITH 3-MB-PP1
 
Authors :  A. K. Roos, O. King, A. Chaikuad, C. Zhang, K. M. Shokat, A. K. Wernimont, L. Lin, F. I. Mackenzie, P. J. Finerty, M. Vedadi, M. Schapira, M. Indar I. Kozieradzki, A. C. W. Pike, O. Fedorov, D. Doyle, J. Muniz, C. H. Arro J. Weigelt, A. Edwards, C. Bountra, F. Von Delft, T. Heightman, R. Hui
Date :  31 Mar 09  (Deposition) - 28 Apr 09  (Release) - 05 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Nucleotide-Binding, Serine/Threonine-Protein Kinase, Kinase, Transferase, Atp-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. D. Artz, A. K. Wernimont, A. Allali-Hassani, Y. Zhao, M. Amani, Y. H. Lin, G. Senisterra, G. A. Wasney, O. Fedorov, O. King, A. K. Roos, V. V. Lunin, W. Qiu, P. J. Finerty, A. Hutchinson, I. Chau, F. Von Delft F. I. Mackenzie, J. Lew, I. Kozieradzki, M. Vedadi, M. Schapira, C. Zhang, K. M. Shokat, T. Heightman, R. Hui
The Cryptosporidium Parvum Kinome.
Bmc Genomics V. 12 478 2011
PubMed-ID: 21962082  |  Reference-DOI: 10.1186/1471-2164-12-478

(-) Compounds

Molecule 1 - CALMODULIN-DOMAIN PROTEIN KINASE 1, PUTATIVE
    Chains: A
    EC Number: 2.7.1.17
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: R3PACYC-LIC LAMP-PHOSPHATASE
    Expression System Vector: P15-MHL
    Fragment: RESIDUES 70-338
    Gene: CGD3_920
    Organism Scientific: CRYPTOSPORIDIUM PARVUM IOWA II
    Organism Taxid: 353152
    Synonym: KINASE DOMAIN OF CALCIUM DEPENDENT PROTEIN KINASE 4

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1VGG1Ligand/Ion1-TERT-BUTYL-3-(3-METHYLBENZYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:82 , ALA A:103 , LYS A:105 , MET A:136 , ILE A:150 , GLU A:153 , TYR A:155 , LEU A:205 , ILE A:218 , HOH A:2029 , HOH A:2199BINDING SITE FOR RESIDUE VGG A 600

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WEI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WEI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WEI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WEI)

(-) Exons   (0, 0)

(no "Exon" information available for 2WEI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:278
 aligned with A3FQ16_CRYPI | A3FQ16 from UniProtKB/TrEMBL  Length:538

    Alignment length:287
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       
         A3FQ16_CRYPI    52 MGGERGSVTTGMFVQSGSGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYSSE 338
               SCOP domains d2we      ia_ A   : automated matches                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------2w   eiA01 A:-1-157 Phosphorylase Kinase; domain 1                                           2weiA02 A:158-338 Transferase(Phosphotransferase) domain 1                                                                                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhh------hhhhh---hhhhhheeeeeeeeee..eeeeeeee.....eeeeeeee.......hhhhhhhhhhhhhh........eeeeee...eeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee........eee...hhhhh........hhhhhhh..hhhhhh....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.....hhhhh..hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wei A  -8 SGRE------NLYFQ---GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYSSE 338
                               |     -|   |   71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       
                              -5     -4   0  70
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2WEI)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (A3FQ16_CRYPI | A3FQ16)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.

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 Related Entries

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UniProtKB/TrEMBL
        A3FQ16_CRYPI | A3FQ16: 3dfa 3igo 3mwu 3ncg 4y5q

(-) Related Entries Specified in the PDB File

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