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(-) Description

Title :  CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RV0376C HOMOLOGUE FROM MYCOBACTERIUM SMEGMATIS
 
Authors :  H. J. Cho, B. S. Kang
Date :  29 Mar 09  (Deposition) - 07 Apr 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (2x)
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. J. Cho, B. S. Kang
Crystal Structure Of Mycobacterium Tuberculosis Rv0376C Homologue From Mycobacterium Smegmatis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - XANTHINE DEHYDROGENASE
    Chains: A, B
    EC Number: 1.17.1.4
    Organism Scientific: MYCOBACTERIUM SMEGMATIS
    Organism Taxid: 246196
    Other Details: RESIDUES 4-360
    Strain: MC2 155

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): A 
Biological Unit 2 (2x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2GOL7Ligand/IonGLYCEROL
Biological Unit 1 (2, 20)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2GOL14Ligand/IonGLYCEROL
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2GOL-1Ligand/IonGLYCEROL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:61 , TYR A:64 , ASP A:65 , TRP A:255 , LYS A:283 , GOL A:1366 , HOH A:2038BINDING SITE FOR RESIDUE GOL A1361
02AC2SOFTWAREPRO A:333 , GLY A:335 , ASP A:337 , HOH A:2180 , HOH A:2181BINDING SITE FOR RESIDUE GOL A1362
03AC3SOFTWAREPRO A:37 , PRO A:343 , GOL A:1364BINDING SITE FOR RESIDUE GOL A1363
04AC4SOFTWAREPHE A:215 , THR A:346 , GOL A:1363 , HOH A:2018BINDING SITE FOR RESIDUE GOL A1364
05AC5SOFTWARETYR A:64 , THR A:68 , TRP A:255 , ARG A:258BINDING SITE FOR RESIDUE GOL A1365
06AC6SOFTWAREGLU A:60 , TYR A:64 , ALA A:235 , PRO A:237 , GOL A:1361BINDING SITE FOR RESIDUE GOL A1366
07AC7SOFTWAREALA A:248 , ASP A:249BINDING SITE FOR RESIDUE GOL A1367
08AC8SOFTWAREHIS A:310 , LEU A:327 , LEU A:330 , SER A:332BINDING SITE FOR RESIDUE ACT A1368
09AC9SOFTWAREASP A:337 , TRP A:359BINDING SITE FOR RESIDUE ACT A1369
10BC1SOFTWAREALA A:217 , GLN A:221 , PHE A:245 , PRO A:246 , THR A:247 , HOH A:2114BINDING SITE FOR RESIDUE ACT A1370

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WE8)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ser A:332 -Pro A:333
2Ser B:332 -Pro B:333

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WE8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WE8)

(-) Exons   (0, 0)

(no "Exon" information available for 2WE8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:345
 aligned with A0QQG1_MYCS2 | A0QQG1 from UniProtKB/TrEMBL  Length:386

    Alignment length:357
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       
         A0QQG1_MYCS2     4 GVRDVLGTLSAVWESGGTAGVGTVVRTFRSAPRPAGASMVVAPDGTVSGSVSGGCVEGAVYDLATEVVATGTPVLQRYGVSDDDAFEVGLTCGGILDVFVEPVSQKTFPQLGAIRDDIEAQRPVAVATVITHPDAQWIGRRLVVHTDEVAGSLGSSRADAAVTDDARGLLAAGRSEVLTYGPDGQRRGEGMEVFVSSYAPRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFATTARFPTADEVVVDWPHRYLAAQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGAMGSRRTHEDRLARLREAGLTEEELARLSSPIGLDLGGRTPEETAVSIAAEIIAKRWG 360
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..eeeeeeeeee.........eeee.....eee......hhhhhhhhhhhhhhhh..eeeeee.------------..eeeeeeeee......hhhhhhhhhhhh..eeeeeeee..hhhhh..eeee...eeee...hhhhhhhhhhhhhhhhhhh..eeeee..........eeeeeeee....eeeee...hhhhhhhhhhhhh..eeeeee...............eeee.hhhhhhhhhhhhh......eeee...hhhhhhhhhhhhh......eeee..hhhhhhhhhhhhhhh..hhhhhh.............hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2we8 A   4 GVRDVLGTLSAVWESGGTAGVGTVVRTFRSAPRPAGASMVVAPDGTVSGSVSGGCVEGAVYDLATEVVATGTPVLQRYGV------------GGILDVFVEPVSQKTFPQLGAIRDDIEAQRPVAVATVITHPDAQWIGRRLVVHTDEVAGSLGSSRADAAVTDDARGLLAAGRSEVLTYGPDGQRRGEGMEVFVSSYAPRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFATTARFPTADEVVVDWPHRYLAAQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGAMGSRRTHEDRLARLREAGLTEEELARLSSPIGLDLGGRTPEETAVSIAAEIIAKRWG 360
                                    13        23        33        43        53        63        73        83         -  |    103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       
                                                                                                          83           96                                                                                                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:335
 aligned with A0QQG1_MYCS2 | A0QQG1 from UniProtKB/TrEMBL  Length:386

    Alignment length:355
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354     
         A0QQG1_MYCS2     5 VRDVLGTLSAVWESGGTAGVGTVVRTFRSAPRPAGASMVVAPDGTVSGSVSGGCVEGAVYDLATEVVATGTPVLQRYGVSDDDAFEVGLTCGGILDVFVEPVSQKTFPQLGAIRDDIEAQRPVAVATVITHPDAQWIGRRLVVHTDEVAGSLGSSRADAAVTDDARGLLAAGRSEVLTYGPDGQRRGEGMEVFVSSYAPRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFATTARFPTADEVVVDWPHRYLAAQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGAMGSRRTHEDRLARLREAGLTEEELARLSSPIGLDLGGRTPEETAVSIAAEIIAKRW 359
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------------------------------------------------------------------------------------------------XdhC_CoxI-2we8B03 B:118-185                                         ---------------------XdhC_C-2we8B01 B:207-354                                                                                                                            ----- Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------------------------------------------------------------------XdhC_CoxI-2we8B04 B:118-185                                         ---------------------XdhC_C-2we8B02 B:207-354                                                                                                                            ----- Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------------------------------------------------XdhC_CoxI-2we8B05 B:118-185                                         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------------------------------------------------------------XdhC_CoxI-2we8B06 B:118-185                                         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (4)
         Sec.struct. author ...hhhhhhhhhhhh..eeeeeeee.------....eeee.....ee.......hhhhhhhhhhhhhhhh..eeeee--------------...eeeeeeee......hhhhhhhhhhh...eeeeeeee.........eeeee..eee....hhhhhhhhhhhhhhhhhh...eeeee..........eeeeeeee....eeeee....hhhhhhhhhhhh..eeeeee...............eeee.hhhhhhhhhhhh.......eeee......hhhhhhhhhh......eeee..hhhhhhhhhhhhhhh..hhhhhh.ee..........hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2we8 B   5 VRDVLGTLSAVWESGGTAGVGTVVRT------PAGASMVVAPDGTVSGSVSGGCVEGAVYDLATEVVATGTPVLQRY--------------GGILDVFVEPVSQKTFPQLGAIRDDIEAQRPVAVATVITHPDAQWIGRRLVVHTDEVAGSLGSSRADAAVTDDARGLLAAGRSEVLTYGPDGQRRGEGMEVFVSSYAPRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFATTARFPTADEVVVDWPHRYLAAQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGAMGSRRTHEDRLARLREAGLTEEELARLSSPIGLDLGGRTPEETAVSIAAEIIAKRW 359
                                    14        24     |   -  |     44        54        64        74      |  -         - |     104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354     
                                                    30     37                                          81             96
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WE8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WE8)

(-) Pfam Domains  (2, 6)

Asymmetric Unit
(-)
Clan: NADP_Rossmann (1239)
(-)
Clan: no clan defined [family: XdhC_CoxI] (3)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2WE8)

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        A0QQG1_MYCS2 | A0QQG1: 2we7

(-) Related Entries Specified in the PDB File

2we7 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RV0376C HOMOLOGUE FROM MYCOBACTERIUM SMEGMATIS