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(-) Description

Title :  CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RV0376C HOMOLOGUE FROM MYCOBACTERIUM SMEGMATIS
 
Authors :  H. J. Cho, B. S. Kang
Date :  29 Mar 09  (Deposition) - 07 Apr 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (2x)
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. J. Cho, B. S. Kang
Crystal Structure Of Mycobacterium Tuberculosis Rv0376C Homologue From Mycobacterium Smegmatis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - XANTHINE DEHYDROGENASE
    Chains: A, B
    EC Number: 1.17.1.4
    Organism Scientific: MYCOBACTERIUM SMEGMATIS
    Organism Taxid: 246196
    Strain: MC2 155

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): A 
Biological Unit 2 (2x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2WE7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WE7)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ser A:332 -Pro A:333
2Ser B:332 -Pro B:333

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WE7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WE7)

(-) Exons   (0, 0)

(no "Exon" information available for 2WE7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:343
 aligned with A0QQG1_MYCS2 | A0QQG1 from UniProtKB/TrEMBL  Length:386

    Alignment length:356
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353      
         A0QQG1_MYCS2     4 GVRDVLGTLSAVWESGGTAGVGTVVRTFRSAPRPAGASMVVAPDGTVSGSVSGGCVEGAVYDLATEVVATGTPVLQRYGVSDDDAFEVGLTCGGILDVFVEPVSQKTFPQLGAIRDDIEAQRPVAVATVITHPDAQWIGRRLVVHTDEVAGSLGSSRADAAVTDDARGLLAAGRSEVLTYGPDGQRRGEGMEVFVSSYAPRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFATTARFPTADEVVVDWPHRYLAAQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGAMGSRRTHEDRLARLREAGLTEEELARLSSPIGLDLGGRTPEETAVSIAAEIIAKRW 359
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhh...eeeeeeeeee.........eeee.....eee......hhhhhhhhhhhhhhhh..eeeee.-------------..eeeeeeeee......hhhhhhhhhhhh..eeeeeeee..hhhhh..eeee...eee....hhhhhhhhhhhhhhhhhh...eeeee..........eeeeeeee....eeeee...hhhhhhhhhhhhh..eeeeee...............eeee.hhhhhhhhhhhh.......eeee...hhhhhhhhhhhhh......eeee..hhhhhhhhhhhhhhh..hhhhhhhee..........hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2we7 A   4 GVRDVLGTLSAVWESGGTAGVGTVVRTFRSAPRPAGASmVVAPDGTVSGSVSGGCVEGAVYDLATEVVATGTPVLQRYG-------------GGILDVFVEPVSQKTFPQLGAIRDDIEAQRPVAVATVITHPDAQWIGRRLVVHTDEVAGSLGSSRADAAVTDDARGLLAAGRSEVLTYGPDGQRRGEGmEVFVSSYAPRPRmLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFATTARFPTADEVVVDWPHRYLAAQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGAmGSRRTHEDRLARLREAGLTEEELARLSSPIGLDLGGRTPEETAVSIAAEIIAKRW 359
                                    13        23        33        43        53        63        73        |-         -  |    103       113       123       133       143       153       163       173       183       193|      203   |   213       223       233       243       253       263       273       283       293       303|      313       323       333       343       353      
                                                                 42-MSE                                  82            96                                                                                               194-MSE      207-MSE                                                                                          304-MSE                                                   


Chain B from PDB  Type:PROTEIN  Length:335
 aligned with A0QQG1_MYCS2 | A0QQG1 from UniProtKB/TrEMBL  Length:386

    Alignment length:356
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353      
         A0QQG1_MYCS2     4 GVRDVLGTLSAVWESGGTAGVGTVVRTFRSAPRPAGASMVVAPDGTVSGSVSGGCVEGAVYDLATEVVATGTPVLQRYGVSDDDAFEVGLTCGGILDVFVEPVSQKTFPQLGAIRDDIEAQRPVAVATVITHPDAQWIGRRLVVHTDEVAGSLGSSRADAAVTDDARGLLAAGRSEVLTYGPDGQRRGEGMEVFVSSYAPRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFATTARFPTADEVVVDWPHRYLAAQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGAMGSRRTHEDRLARLREAGLTEEELARLSSPIGLDLGGRTPEETAVSIAAEIIAKRW 359
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------------------XdhC_CoxI-2we7B03 B:118-185                                         ---------------------XdhC_C-2we7B01 B:207-354                                                                                                                            ----- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------XdhC_CoxI-2we7B04 B:118-185                                         ---------------------XdhC_C-2we7B02 B:207-354                                                                                                                            ----- Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------------------------------------------------------------XdhC_CoxI-2we7B05 B:118-185                                         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------------------------------------------------------------XdhC_CoxI-2we7B06 B:118-185                                         ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (4)
         Sec.struct. author ....hhhhhhhhhh....eeeeee..-------....eeee.....eee......hhhhhhhhhhhhhhhh..eeeee--------------...eeeeeeee......hhhhhhhhhhh...eeeeeeee..hhhhh..eeee...eee....hhhhhhhhhhhhhhhhhh...eeeeee...ee....eeeeeeee....eeeee....hhhhhhhhhhhh..eeeeee......hhhhh....eeee.hhhhhhhhhhhhh......eeee......hhhhhhhhhh......eeee..hhhhhhhhhhhhhh...hhhhhhhh...........hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2we7 B   4 GVRDVLGTLSAVWESGGTAGVGTVVR-------PAGASmVVAPDGTVSGSVSGGCVEGAVYDLATEVVATGTPVLQRY--------------GGILDVFVEPVSQKTFPQLGAIRDDIEAQRPVAVATVITHPDAQWIGRRLVVHTDEVAGSLGSSRADAAVTDDARGLLAAGRSEVLTYGPDGQRRGEGmEVFVSSYAPRPRmLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFATTARFPTADEVVVDWPHRYLAAQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGAmGSRRTHEDRLARLREAGLTEEELARLSSPIGLDLGGRTPEETAVSIAAEIIAKRW 359
                                    13        23     |   -   |    43        53        63        73       | -         -  |    103       113       123       133       143       153       163       173       183       193|      203   |   213       223       233       243       253       263       273       283       293       303|      313       323       333       343       353      
                                                    29      37    |                                     81             96                                                                                               194-MSE      207-MSE                                                                                          304-MSE                                                   
                                                                 42-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WE7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WE7)

(-) Pfam Domains  (2, 6)

Asymmetric Unit
(-)
Clan: NADP_Rossmann (1239)
(-)
Clan: no clan defined [family: XdhC_CoxI] (3)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2WE7)

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  Cis Peptide Bonds
    Ser A:332 - Pro A:333   [ RasMol ]  
    Ser B:332 - Pro B:333   [ RasMol ]  
 
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(-) Related Entries Specified in the PDB File

2we8 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RV0376C HOMOLOGUE FROM MYCOBACTERIUM SMEGMATIS