Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  PROPERTIES OF TRYPANOTHIONE REDUCTASE FROM T. BRUCEI
 
Authors :  D. Jones, A. Ariza, W. H. A. Chow, S. L. Oza, A. H. Fairlamb
Date :  24 Feb 09  (Deposition) - 24 Nov 09  (Release) - 19 May 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Redox-Active Center, Flavoprotein, Trypnothione Metabolism Oxidoreductase, (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Jones, A. Ariza, W. H. A. Chow, S. L. Oza, A. H. Fairlamb
Comparative Structural, Kinetic And Inhibitor Studies Of Trypanosoma Brucei Trypanothione Reductase With T. Cruzi.
Mol. Biochem. Parasitol. V. 169 12 2010
PubMed-ID: 19747949  |  Reference-DOI: 10.1016/J.MOLBIOPARA.2009.09.002

(-) Compounds

Molecule 1 - TRYPANOTHIONE REDUCTASE
    Chains: A, B
    EC Number: 1.8.1.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Strain: BL21 STAR (DE3) PLYSS
    Expression System Taxid: 469008
    Organism Scientific: TRYPANOSOMA BRUCEI BRUCEI
    Organism Taxid: 5702
    Strain: S427

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 15)

Asymmetric/Biological Unit (5, 15)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2GOL8Ligand/IonGLYCEROL
3NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4PG41Ligand/IonTETRAETHYLENE GLYCOL
5SO42Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:10 , GLY A:11 , GLY A:13 , SER A:14 , GLY A:15 , VAL A:34 , ASP A:35 , ALA A:46 , ALA A:47 , GLY A:50 , THR A:51 , CYS A:52 , CYS A:57 , LYS A:60 , GLY A:127 , ALA A:159 , THR A:160 , GLY A:161 , ARG A:287 , ARG A:290 , GLY A:326 , ASP A:327 , MET A:333 , LEU A:334 , THR A:335 , PRO A:336 , HOH A:2164 , HOH A:2247 , HOH A:2269 , HOH A:2373 , HOH A:2374 , HOH A:2375 , HOH A:2376 , HOH A:2377 , HIS B:461BINDING SITE FOR RESIDUE FAD A1491
02AC2SOFTWAREHIS A:461 , HOH A:2357 , ILE B:10 , GLY B:11 , GLY B:13 , SER B:14 , GLY B:15 , VAL B:34 , ASP B:35 , VAL B:36 , ALA B:46 , ALA B:47 , GLY B:50 , THR B:51 , CYS B:52 , CYS B:57 , LYS B:60 , GLY B:125 , TRP B:126 , GLY B:127 , ALA B:159 , THR B:160 , GLY B:161 , ARG B:287 , ARG B:290 , GLY B:326 , ASP B:327 , MET B:333 , LEU B:334 , THR B:335 , PRO B:336 , HOH B:2283 , HOH B:2383 , HOH B:2384 , HOH B:2385 , HOH B:2386 , HOH B:2387 , HOH B:2388BINDING SITE FOR RESIDUE FAD B1491
03AC3SOFTWAREGLU A:18 , TYR A:110 , HOH A:2378BINDING SITE FOR RESIDUE GOL A1492
04AC4SOFTWARESER B:109 , TYR B:110BINDING SITE FOR RESIDUE GOL B1492
05AC5SOFTWARESER A:470 , ARG A:472 , THR A:473 , HOH A:2368BINDING SITE FOR RESIDUE GOL A1493
06AC6SOFTWARETRP B:163 , ARG B:290 , ASP B:293BINDING SITE FOR RESIDUE GOL B1493
07AC7SOFTWAREGLU B:139 , PRO B:213 , HOH B:2189 , HOH B:2389BINDING SITE FOR RESIDUE GOL B1494
08AC8SOFTWAREGLU B:18 , TYR B:110 , HOH B:2390BINDING SITE FOR RESIDUE GOL B1495
09AC9SOFTWARESER A:109BINDING SITE FOR RESIDUE GOL A1494
10BC1SOFTWAREARG A:290 , ASP A:293 , HOH A:2379 , HOH A:2380 , HOH A:2381BINDING SITE FOR RESIDUE GOL A1495
11BC2SOFTWAREGLY B:196 , GLY B:197 , TYR B:221 , ARG B:222 , ASN B:223 , ARG B:228 , ASN B:254 , ALA B:284 , ILE B:285 , GLY B:286 , ARG B:287 , HOH B:2391 , HOH B:2393 , HOH B:2394 , HOH B:2395 , HOH B:2396BINDING SITE FOR RESIDUE NDP B1496
12BC3SOFTWAREGLY A:196 , GLY A:197 , TYR A:221 , ARG A:222 , ASN A:223 , ARG A:228 , ASN A:254 , ALA A:284 , ILE A:285 , GLY A:286 , HOH A:2382 , HOH A:2383 , HOH A:2384 , HOH A:2385 , HOH A:2387BINDING SITE FOR RESIDUE NDP A1496
13BC4SOFTWAREVAL A:311 , ASP A:312 , ARG A:316 , THR A:317 , HOH A:2388 , HOH A:2389 , ASP B:312 , ARG B:316 , THR B:317BINDING SITE FOR RESIDUE PG4 A1497
14BC5SOFTWAREARG B:189 , ARG B:190 , HOH B:2253 , HOH B:2397BINDING SITE FOR RESIDUE SO4 B1497
15BC6SOFTWAREARG A:189 , ARG A:190BINDING SITE FOR RESIDUE SO4 A1498

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:52 -A:57
2B:52 -B:57

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Pro A:42 -Pro A:43
2Ile A:369 -Pro A:370
3His A:461 -Pro A:462
4Pro B:42 -Pro B:43
5Ile B:369 -Pro B:370
6His B:461 -Pro B:462

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WBA)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PYRIDINE_REDOX_1PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site.TYTR_TRYBB49-59
 		  2A:49-59
B:49-59

(-) Exons   (0, 0)

(no "Exon" information available for 2WBA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:489
 aligned with TYTR_TRYBB | P39051 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:489
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481         
           TYTR_TRYBB     2 SKIFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGVEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYLKGEKMETLPES 490
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wbaA01 A:2-164,A:286-360  [code=3.50.50.60, no name defined]                                                                                                      2wbaA02 A:165-285  [code=3.50.50.60, no name defined]                                                                    2wbaA01 A:2-164,A:286-360  [code=3.50.50.60, no name defined]              2wbaA03 A:361-472  [code=3.30.390.30, no name defined]                                                          ------------------ CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhhhh..eeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee.hhhhheehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.eeeeee..eeeee........eeeeeeeeeeee...eee......hhhhheehhhhh.......eeeee..hhhhhhhhhhhhhhh....eeeeee.........hhhhhhhhhhhhhh..eeeee...eeeeee.....eeeee....eeee.eeee...eee.....hhhhh......................eee.hhhhh...hhhhhhhhhhhhhhhhh............eeee.....eeeee.hhhhhhhhh.eeeeeeeee.hhhhhhhh.....eeeeeeee.....eeeeeee..hhhhhhhhhhhhhhh..hhhhhhh.......hhhhhhh.....eeee..eee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------PYRIDINE_RE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wba A   2 SKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYVKGEKMEKLPDS 490
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481         


Chain B from PDB  Type:PROTEIN  Length:489
 aligned with TYTR_TRYBB | P39051 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:489
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481         
           TYTR_TRYBB     2 SKIFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGVEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYLKGEKMETLPES 490
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2wbaB01 B:2-164,B:286-360  [code=3.50.50.60, no name defined]                                                                                                      2wbaB02 B:165-285  [code=3.50.50.60, no name defined]                                                                    2wbaB01 B:2-164,B:286-360  [code=3.50.50.60, no name defined]              2wbaB03 B:361-472  [code=3.30.390.30, no name defined]                                                          ------------------ CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Pyr_redox-2wbaB01 B:190-274                                                          ---------------------------------------------------------------------------------------Pyr_redox_dim-2wbaB05 B:362-472                                                                                ------------------ Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Pyr_redox-2wbaB02 B:190-274                                                          ---------------------------------------------------------------------------------------Pyr_redox_dim-2wbaB06 B:362-472                                                                                ------------------ Pfam domains (2)
           Pfam domains (3) ----Pyr_redox_2-2wbaB03 B:6-332                                                                                                                                                                                                                                                                                                            -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----Pyr_redox_2-2wbaB04 B:6-332                                                                                                                                                                                                                                                                                                            -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhhhh..eeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee.hhhhheehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.eeeeee..eeeee........eeeeeeeeeeee...eee......hhhhh.hhhhhh.......eeeee..hhhhhhhhhhhhhhh....eeeeee.........hhhhhhhhhhhhhhh..eeee...eeeeee.....eeeee....eeee.eeee...eee.hhhhh..........................eee.hhhhh...hhhhhhhhhhhhhhhhhhh...........eee.....eeeee.hhhhhhhhh.eeeeeeeee.hhhhhhhh.....eeeeeeee.....eeeeeee..hhhhhhhhhhhhhhh..hhhhhhh.......hhhhhhh.....eeee..eee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------PYRIDINE_RE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wba B   2 SKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYVKGEKMEKLPDS 490
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WBA)

(-) CATH Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (3, 6)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)
(-)
Clan: no clan defined [family: Pyr_redox_dim] (44)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (TYTR_TRYBB | P39051)
molecular function
    GO:0015036    disulfide oxidoreductase activity    Catalysis of the reaction: substrate with reduced sulfide groups = substrate with oxidized disulfide bonds.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016668    oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces NAD or NADP.
    GO:0015042    trypanothione-disulfide reductase activity    Catalysis of the reaction: NADP+ + trypanothione = NADPH + H+ + trypanothione disulfide.
biological process
    GO:0045454    cell redox homeostasis    Any process that maintains the redox environment of a cell or compartment within a cell.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    FAD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NDP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PG4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    His A:461 - Pro A:462   [ RasMol ]  
    His B:461 - Pro B:462   [ RasMol ]  
    Ile A:369 - Pro A:370   [ RasMol ]  
    Ile B:369 - Pro B:370   [ RasMol ]  
    Pro A:42 - Pro A:43   [ RasMol ]  
    Pro B:42 - Pro B:43   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2wba
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  TYTR_TRYBB | P39051
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.8.1.12
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  TYTR_TRYBB | P39051
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TYTR_TRYBB | P39051: 2wpf

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2WBA)