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2WBA
Asym. Unit
Info
Asym.Unit (178 KB)
Biol.Unit 1 (172 KB)
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(1)
Title
:
PROPERTIES OF TRYPANOTHIONE REDUCTASE FROM T. BRUCEI
Authors
:
D. Jones, A. Ariza, W. H. A. Chow, S. L. Oza, A. H. Fairlamb
Date
:
24 Feb 09 (Deposition) - 24 Nov 09 (Release) - 19 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Redox-Active Center, Flavoprotein, Trypnothione Metabolism Oxidoreductase,
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Jones, A. Ariza, W. H. A. Chow, S. L. Oza, A. H. Fairlamb
Comparative Structural, Kinetic And Inhibitor Studies Of Trypanosoma Brucei Trypanothione Reductase With T. Cruzi.
Mol. Biochem. Parasitol. V. 169 12 2010
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
3b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
4a: TETRAETHYLENE GLYCOL (PG4a)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
GOL
8
Ligand/Ion
GLYCEROL
3
NDP
2
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
5
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:10 , GLY A:11 , GLY A:13 , SER A:14 , GLY A:15 , VAL A:34 , ASP A:35 , ALA A:46 , ALA A:47 , GLY A:50 , THR A:51 , CYS A:52 , CYS A:57 , LYS A:60 , GLY A:127 , ALA A:159 , THR A:160 , GLY A:161 , ARG A:287 , ARG A:290 , GLY A:326 , ASP A:327 , MET A:333 , LEU A:334 , THR A:335 , PRO A:336 , HOH A:2164 , HOH A:2247 , HOH A:2269 , HOH A:2373 , HOH A:2374 , HOH A:2375 , HOH A:2376 , HOH A:2377 , HIS B:461
BINDING SITE FOR RESIDUE FAD A1491
02
AC2
SOFTWARE
HIS A:461 , HOH A:2357 , ILE B:10 , GLY B:11 , GLY B:13 , SER B:14 , GLY B:15 , VAL B:34 , ASP B:35 , VAL B:36 , ALA B:46 , ALA B:47 , GLY B:50 , THR B:51 , CYS B:52 , CYS B:57 , LYS B:60 , GLY B:125 , TRP B:126 , GLY B:127 , ALA B:159 , THR B:160 , GLY B:161 , ARG B:287 , ARG B:290 , GLY B:326 , ASP B:327 , MET B:333 , LEU B:334 , THR B:335 , PRO B:336 , HOH B:2283 , HOH B:2383 , HOH B:2384 , HOH B:2385 , HOH B:2386 , HOH B:2387 , HOH B:2388
BINDING SITE FOR RESIDUE FAD B1491
03
AC3
SOFTWARE
GLU A:18 , TYR A:110 , HOH A:2378
BINDING SITE FOR RESIDUE GOL A1492
04
AC4
SOFTWARE
SER B:109 , TYR B:110
BINDING SITE FOR RESIDUE GOL B1492
05
AC5
SOFTWARE
SER A:470 , ARG A:472 , THR A:473 , HOH A:2368
BINDING SITE FOR RESIDUE GOL A1493
06
AC6
SOFTWARE
TRP B:163 , ARG B:290 , ASP B:293
BINDING SITE FOR RESIDUE GOL B1493
07
AC7
SOFTWARE
GLU B:139 , PRO B:213 , HOH B:2189 , HOH B:2389
BINDING SITE FOR RESIDUE GOL B1494
08
AC8
SOFTWARE
GLU B:18 , TYR B:110 , HOH B:2390
BINDING SITE FOR RESIDUE GOL B1495
09
AC9
SOFTWARE
SER A:109
BINDING SITE FOR RESIDUE GOL A1494
10
BC1
SOFTWARE
ARG A:290 , ASP A:293 , HOH A:2379 , HOH A:2380 , HOH A:2381
BINDING SITE FOR RESIDUE GOL A1495
11
BC2
SOFTWARE
GLY B:196 , GLY B:197 , TYR B:221 , ARG B:222 , ASN B:223 , ARG B:228 , ASN B:254 , ALA B:284 , ILE B:285 , GLY B:286 , ARG B:287 , HOH B:2391 , HOH B:2393 , HOH B:2394 , HOH B:2395 , HOH B:2396
BINDING SITE FOR RESIDUE NDP B1496
12
BC3
SOFTWARE
GLY A:196 , GLY A:197 , TYR A:221 , ARG A:222 , ASN A:223 , ARG A:228 , ASN A:254 , ALA A:284 , ILE A:285 , GLY A:286 , HOH A:2382 , HOH A:2383 , HOH A:2384 , HOH A:2385 , HOH A:2387
BINDING SITE FOR RESIDUE NDP A1496
13
BC4
SOFTWARE
VAL A:311 , ASP A:312 , ARG A:316 , THR A:317 , HOH A:2388 , HOH A:2389 , ASP B:312 , ARG B:316 , THR B:317
BINDING SITE FOR RESIDUE PG4 A1497
14
BC5
SOFTWARE
ARG B:189 , ARG B:190 , HOH B:2253 , HOH B:2397
BINDING SITE FOR RESIDUE SO4 B1497
15
BC6
SOFTWARE
ARG A:189 , ARG A:190
BINDING SITE FOR RESIDUE SO4 A1498
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PYRIDINE_REDOX_1 (A:49-59,B:49-59)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRIDINE_REDOX_1
PS00076
Pyridine nucleotide-disulphide oxidoreductases class-I active site.
TYTR_TRYBB
49-59
2
A:49-59
B:49-59
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2wbaA03 (A:361-472)
1b: CATH_2wbaB03 (B:361-472)
2a: CATH_2wbaA01 (A:2-164,A:286-360)
2b: CATH_2wbaB01 (B:2-164,B:286-360)
2c: CATH_2wbaA02 (A:165-285)
2d: CATH_2wbaB02 (B:165-285)
View:
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Classes
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Architectures
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.30, no name defined]
(99)
Trypanosoma brucei brucei. Organism_taxid: 5702. Strain: s427.
(1)
1a
2wbaA03
A:361-472
1b
2wbaB03
B:361-472
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Trypanosoma brucei brucei. Organism_taxid: 5702. Strain: s427.
(1)
2a
2wbaA01
A:2-164,A:286-360
2b
2wbaB01
B:2-164,B:286-360
2c
2wbaA02
A:165-285
2d
2wbaB02
B:165-285
[
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Pyr_redox_2wbaB01 (B:190-274)
1b: PFAM_Pyr_redox_2wbaB02 (B:190-274)
2a: PFAM_Pyr_redox_2_2wbaB03 (B:6-332)
2b: PFAM_Pyr_redox_2_2wbaB04 (B:6-332)
3a: PFAM_Pyr_redox_dim_2wbaB05 (B:362-472)
3b: PFAM_Pyr_redox_dim_2wbaB06 (B:362-472)
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Clans
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(
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Families
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(
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Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
Pyr_redox
(62)
Trypanosoma brucei brucei
(1)
1a
Pyr_redox-2wbaB01
B:190-274
1b
Pyr_redox-2wbaB02
B:190-274
Family
:
Pyr_redox_2
(69)
Trypanosoma brucei brucei
(1)
2a
Pyr_redox_2-2wbaB03
B:6-332
2b
Pyr_redox_2-2wbaB04
B:6-332
Clan
:
no clan defined [family: Pyr_redox_dim]
(44)
Family
:
Pyr_redox_dim
(44)
Trypanosoma brucei brucei
(1)
3a
Pyr_redox_dim-2wbaB05
B:362-472
3b
Pyr_redox_dim-2wbaB06
B:362-472
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