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(-) Description

Title :  HUMAN MESENCEPHALIC ASTROCYTE-DERIVED NEUROTROPHIC FACTOR ( MANF)
 
Authors :  V. Parkash, P. Lindholm, J. Peranen, N. Kalkkinen, E. Oksanen, M. Saarma, V. M. Leppanen, A. Goldman
Date :  03 Dec 08  (Deposition) - 17 Mar 09  (Release) - 31 Mar 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Manf, Cdnf, Saposin, Secreted, Er Stress, Phosphoprotein, Neurotrophic Factor, Sialic Acid, Glycoprotein, Growth Factor, Hormone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Parkash, P. Lindholm, J. Peranen, N. Kalkkinen, E. Oksanen, M. Saarma, V. M. Leppanen, A. Goldman
The Structure Of The Conserved Neurotrophic Factors Manf And Cdnf Explains Why They Are Bifunctional.
Protein Eng. Des. Sel. V. 22 233 2009
PubMed-ID: 19258449  |  Reference-DOI: 10.1093/PROTEIN/GZN080

(-) Compounds

Molecule 1 - PROTEIN ARMET
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cell Line: ORIGAMI DE3
    Expression System Taxid: 562
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MESENCEPHALIC ASTROCYTE-DERIVED NEUROTROPHIC FACTOR, ARGININE-RICH PROTEIN, MANF

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2W51)

(-) Sites  (0, 0)

(no "Site" information available for 2W51)

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:6 -A:93
2A:9 -A:82
3A:40 -A:51
4A:127 -A:130

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp A:102 -Leu A:103

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2W51)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2W51)

(-) Exons   (0, 0)

(no "Exon" information available for 2W51)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:137
 aligned with MANF_HUMAN | P55145 from UniProtKB/Swiss-Prot  Length:182

    Alignment length:137
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       
           MANF_HUMAN    25 LRPGDCEVCISYLGRFYQDLKDRDVTFSPATIENELIKFCREARGKENRLCYYIGATDDAATKIINEVSKPLAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDWGETCKGCAEKSDYI 161
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----Armet-2w51A01 A:5-137                                                                                                                 Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhh.....................hhhhhhhhhh.........hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2w51 A   1 LRPGDCEVCISYLGRFYQDLKDRDVTFSPATIENELIKFCREARGKENRLCYYIGATDDAATKIINEVSKPLAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDWGETCKGCAEKSDYI 137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2W51)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2W51)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Armet] (4)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (MANF_HUMAN | P55145)
molecular function
    GO:0008083    growth factor activity    The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
    GO:0006986    response to unfolded protein    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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  Cis Peptide Bonds
    Asp A:102 - Leu A:103   [ RasMol ]  
 

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  2w51
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  MANF_HUMAN | P55145
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MANF_HUMAN | P55145: 2kvd 2kve

(-) Related Entries Specified in the PDB File

2w50 N-TERMINAL DOMAIN OF HUMAN CONSERVED DOPAMINE NEUROTROPHIC FACTOR (CDNF)