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(-) Description

Title :  MESENCEPHALIC ASTROCYTE-DERIVED NEUROTROPHIC FACTOR (MANF)
 
Authors :  M. H. Hellman, J. Peranen, M. Saarma, P. Permi
Date :  12 Mar 10  (Deposition) - 03 Nov 10  (Release) - 02 Feb 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (15x)
NMR Structure *:  A  (1x)
Keywords :  Disulfide Bond, Glycoprotein, Growth Factor, Secreted, Sialic Acid, Unfolded Protein Response, Hormone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. H. Hellman, U. Arumae, L. -Y. Yu, P. Lindholm, J. Peranen, M. Saarma, P. Permi
Mesencephalic Astrocyte-Derived Neurotrophic Factor (Manf) Has A Unique Mechanism To Rescue Apoptotic Neurons
J. Biol. Chem. V. 286 2675 2011
PubMed-ID: 21047780  |  Reference-DOI: 10.1074/JBC.M110.146738

(-) Compounds

Molecule 1 - MESENCEPHALIC ASTROCYTE-DERIVED NEUROTROPHIC FACTOR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ORIGAMIB (DE3)
    Expression System Taxid: 562
    Expression System Vector: PFOLD
    Expression System Vector Type: VECTOR
    Gene: MESENCEPHALIC ASTROCYTE-DERIVED NEUROTROPHIC FACTOR
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MANF, PROTEIN ARMET, ARGININE-RICH PROTEIN

 Structural Features

(-) Chains, Units

  1
NMR Structure (15x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2KVD)

(-) Sites  (0, 0)

(no "Site" information available for 2KVD)

(-) SS Bonds  (4, 4)

NMR Structure
No.Residues
1A:6 -A:93
2A:9 -A:82
3A:40 -A:51
4A:127 -A:130

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2KVD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2KVD)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2KVD)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:160
 aligned with MANF_HUMAN | P55145 from UniProtKB/Swiss-Prot  Length:182

    Alignment length:162
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180  
           MANF_HUMAN    21 GSRALRPGDCEVCISYLGRFYQDLKDRDVTFSPATIENELIKFCREARGKENRLCYYIGATDDAATKIINEVSKPLAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDWGETCKGCAEKSDYIRKINELMPKYAPKAASARTDL 182
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains --------Armet-2kvdA01 A:5-155                                                                                                                                  --- Pfam domains
         Sec.struct. author ..--.....hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh.......................hhhhhhhhh......hhhhhhhhhhhhhh........hhhhh.....hhhhhhhhhhhhh.......hhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2kvd A  -1 GS--LRPGDCEVCISYLGRFYQDLKDRDVTFSPATIENELIKFCREARGKENRLCYYIGATDDAATKIINEVSKPLAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDWGETCKGCAEKSDYIRKINELMPKYAPKAASARTDL 158
                             |  |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156  
                             0  1
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2KVD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KVD)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: Armet] (4)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (MANF_HUMAN | P55145)
molecular function
    GO:0008083    growth factor activity    The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
    GO:0006986    response to unfolded protein    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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  2kvd
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MANF_HUMAN | P55145: 2kve 2w51

(-) Related Entries Specified in the PDB File

2kve STRUCTURE OF C-TERMINAL DOMAIN OF MANF RELATED ID: 16775 RELATED DB: BMRB