2W2U - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURAL INSIGHT INTO THE INTERACTION BETWEEN ARCHAEAL ESCRT-III AND AAA-ATPASE

Authors :   T. Obita, R. Y. Samson, O. Perisic, S. M. Freund, S. D. Bell, R. L. William

Date :   04 Nov 08 (Deposition) - 14 Jul 09 (Release) - 14 Jul 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B,D  (1x)

Keywords :   Hydrolase Transport Complex, Nucleotide-Binding, Escrt, Aaa-Atpase, Cytokinesis, Atp-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Y. Samson, T. Obita, S. M. Freund, R. L. Williams, S. D. Bell
A Role For The Escrt System In Cell Division In Archaea.
Science V. 322 1710 2008
PubMed-ID: 19008417 | Reference-DOI: 10.1126/SCIENCE.1165322

Molecule 1 - HYPOTHETICAL P60 KATANIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	POPTH
	Expression System Strain	:	C41(DE3)RIPL
	Expression System Taxid	:	562
	Fragment	:	MIT DOMAIN, RESIDUES 1-75
	Organism Scientific	:	SULFOLOBUS ACIDOCALDARIUS
	Organism Taxid	:	2285
	Synonym	:	SACI1372, AAA FAMILY ATPASE

Molecule 2 - CONSERVED ARCHAEAL PROTEIN
	Chains	:	C, D
	Fragment	:	RESIDUES 182-195
	Organism Scientific	:	SULFOLOBUS ACIDOCALDARIUS
	Organism Taxid	:	2285
	Synonym	:	SACI1373
	Synthetic	:	YES

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:		B		D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2W2U)

(no "Site" information available for 2W2U)

(no "SS Bond" information available for 2W2U)

Asymmetric Unit

No.	Residues
1	Leu C:186	-	Pro C:187
2	Leu D:186	-	Pro D:187

(no "SAP(SNP)/Variant" information available for 2W2U)

(no "PROSITE Motif" information available for 2W2U)

(no "Exon" information available for 2W2U)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:75
 aligned with Q877H3_9CREN | Q877H3 from UniProtKB/TrEMBL  Length:374

    Alignment length:75
                                    10        20        30        40        50        60        70     
         Q877H3_9CREN     1 MSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLKELI  75
               SCOP domains --------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                 2w2u A   1 MSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLKELI  75
                                    10        20        30        40        50        60        70

Chain B from PDB  Type:PROTEIN  Length:74
 aligned with Q877H3_9CREN | Q877H3 from UniProtKB/TrEMBL  Length:374

    Alignment length:74
                                    11        21        31        41        51        61        71    
         Q877H3_9CREN     2 SAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLKELI  75
               SCOP domains -------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----MIT-2w2uB01 B:7-75                                                    Pfam domains (1)
           Pfam domains (2) -----MIT-2w2uB02 B:7-75                                                    Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                 2w2u B   2 SAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLKELI  75
                                    11        21        31        41        51        61        71

Chain C from PDB  Type:PROTEIN  Length:11
 aligned with CDVB_SULAC | Q4J924 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:11
                                   192 
           CDVB_SULAC   183 RELLPELPHPP 193
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ........... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 2w2u C 183 RELLPELPHPP 193
                                   192

Chain D from PDB  Type:PROTEIN  Length:11
 aligned with CDVB_SULAC | Q4J924 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:11
                                   192 
           CDVB_SULAC   183 RELLPELPHPP 193
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ........... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 2w2u D 183 RELLPELPHPP 193
                                   192

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2W2U)

(no "CATH Domain" information available for 2W2U)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: MIT] (10)

Family: MIT (10)

Sulfolobus acidocaldarius (1)

1a	MIT-2w2uB01	B:7-75
1b	MIT-2w2uB02	B:7-75

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q877H3_9CREN | Q877H3)

molecular function
	GO:0005524		ATP binding		Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

Chain C,D (CDVB_SULAC | Q4J924)

biological process
	GO:0007034	vacuolar transport	The directed movement of substances into, out of or within a vacuole.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Asymmetric Unit
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(no "Ligands, Modified Residues, Ions" information available for 2w2u)

	Sites
(no "Sites" information available for 2w2u)

	Cis Peptide Bonds
		Leu C:186 - Pro C:187	[ RasMol ]
		Leu D:186 - Pro D:187	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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2v6y	STRUCTURE OF THE MIT DOMAIN FROM A S. SOLFATARICUS VPS4-LIKE ATPASE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

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Cis Peptide Bonds (2, 2)

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