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(-) Description

Title :  STRUCTURE OF THE MIT DOMAIN FROM A S. SOLFATARICUS VPS4-LIKE ATPASE
 
Authors :  T. Obita, S. Saksena, S. Ghazi-Tabatabai, D. J. Gill, O. Perisic, S. D. E R. L. Williams
Date :  24 Jul 07  (Deposition) - 16 Oct 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Mit, Vps4, Archaea, Aaa-Atpase, Atp-Binding, Microtubule Interacting And Trafficking Domain, Nucleotide-Binding, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Obita, S. Saksena, S. Ghazi-Tabatabai, D. J. Gill, O. Perisic, S. D. Emr, R. L. Williams
Structural Basis For Selective Recognition Of Escrt-Iii By The Aaa Atpase Vps4
Nature V. 449 735 2007
PubMed-ID: 17928861  |  Reference-DOI: 10.1038/NATURE06171

(-) Compounds

Molecule 1 - AAA FAMILY ATPASE, P60 KATANIN
    Chains: A
    EC Number: 3.6.4.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: POPTH
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Fragment: MIT DOMAIN, RESIDUES 1-83
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287
    Synonym: VPS4-LIKE AAA-ATPASE
 
Molecule 2 - AAA FAMILY ATPASE, P60 KATANIN
    Chains: B
    EC Number: 3.6.4.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: POPTH
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Fragment: MIT DOMAIN, RESIDUES 1-83
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287
    Synonym: VPS4-LIKE AAA-ATPASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1SRT2Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SRT1Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SRT1Ligand/IonS,R MESO-TARTARIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:4 , TYR A:48 , SER A:51 , VAL A:52BINDING SITE FOR RESIDUE SRT A1076
2AC2SOFTWAREARG A:12 , GLN B:4 , TYR B:48 , SER B:51 , VAL B:52BINDING SITE FOR RESIDUE SRT B1076

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2V6Y)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Met A:1 -Ser A:2

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2V6Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2V6Y)

(-) Exons   (0, 0)

(no "Exon" information available for 2V6Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:75
 aligned with Q97ZJ7_SULSO | Q97ZJ7 from UniProtKB/TrEMBL  Length:372

    Alignment length:75
                                    10        20        30        40        50        60        70     
          Q97ZJ7_SULSO    1 MSAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVL 75
               SCOP domains --------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                  2v6y A  1 MSAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVL 75
                                    10        20        30        40        50        60        70     


Chain B from PDB  Type:PROTEIN  Length:72
 aligned with Q97ZJ7_SULSO | Q97ZJ7 from UniProtKB/TrEMBL  Length:372

    Alignment length:74
                                    11        21        31        41        51        61        71    
          Q97ZJ7_SULSO    2 SAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVL 75
               SCOP domains -------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----MIT-2v6yB01 B:7-75                                                    Pfam domains (1)
           Pfam domains (2) -----MIT-2v6yB02 B:7-75                                                    Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh.--hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                  2v6y B  2 SAQVMLEDMARKYAILAVKADKEG--DDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVL 75
                                    11        21   |  | 31        41        51        61        71    
                                                  25 28
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2V6Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2V6Y)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: MIT] (10)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q97ZJ7_SULSO | Q97ZJ7)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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  2v6y
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q97ZJ7_SULSO | Q97ZJ7: 4lgm

(-) Related Entries Specified in the PDB File

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